diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
index 150a5ff3cc0d897026c2f2ccb048ca245c3e04b0..39c0c4e51fe84f689a27d985e3081df9d71cd6c8 100644
--- a/src/CMakeLists.txt
+++ b/src/CMakeLists.txt
@@ -72,6 +72,8 @@ SET(CPP_FILES
input/xpipsaxhandler.cpp
input/xtandemsaxhandler.cpp
output/masschroqml.cpp
+ output/ods/odsexport.cpp
+ output/ods/simplesheet.cpp
utils/identificationdatasourcestore.cpp
utils/groupstore.cpp
utils/msrunstore.cpp
@@ -86,6 +88,7 @@ set(QTLIBS ${Qt5Xml_LIBRARIES} ${Qt5Gui_LIBRARIES} ${Qt5Svg_LIBRARIES})
# (CMAKE_BINARY_DIR holds a path to the build directory, while INCLUDE_DIRECTORIES() works just like INCLUDEPATH from qmake)
SET(XTPCPP_SRCS
+ ./gui/export_spreadsheet_dialog/exportspreadsheetdialog.cpp
./gui/load_results_dialog/loadresultsdialog.cpp
./gui/mainwindow.cpp
./gui/peptide_detail_view/peptidewindow.cpp
@@ -103,6 +106,7 @@ SET(XTPCPP_SRCS
)
SET (GUI_UIS
+ ./gui/export_spreadsheet_dialog/export_spreadsheet_dialog.ui
./gui/load_results_dialog/load_results_dialog.ui
./gui/main.ui
./gui/peptide_detail_view/peptide_detail_view.ui
@@ -116,6 +120,7 @@ SET (GUI_UIS
SET(XTPCPP_MOC_HDRS
+ ./gui/export_spreadsheet_dialog/exportspreadsheetdialog.h
./gui/load_results_dialog/loadresultsdialog.h
./gui/mainwindow.h
./gui/peptide_detail_view/peptidewindow.h
diff --git a/src/core/msrun.cpp b/src/core/msrun.cpp
index 38e7c45412eff029c20ef1eb67da290ffc4bfe20..57ee5eb0224c17abbb00fbe264731265b2a522cb 100644
--- a/src/core/msrun.cpp
+++ b/src/core/msrun.cpp
@@ -49,6 +49,10 @@ MsRun::~MsRun() {
}
+ const QString & MsRun::getSampleName() const {
+ return _name;
+ }
+
void MsRun::setFilename(const QString filename) {
_location = filename;
}
diff --git a/src/core/msrun.h b/src/core/msrun.h
index 40604c926839d3297300452b3b05cabfee134014..25ad79b7648ca73b4d86a6b575f1ee6374bb80ff 100644
--- a/src/core/msrun.h
+++ b/src/core/msrun.h
@@ -50,6 +50,7 @@ public:
void setXmlId(const QString xmlid);
const QString & getFilename() const;
+ const QString & getSampleName() const;
const QString & getXmlId() const;
MzFormat getMzFormat() const;
diff --git a/src/core/project.cpp b/src/core/project.cpp
index 0437c22e6ddcedb7006334894d7f776bccc7f511..ad3de8ff1fee3ab95da07cd22d236c74c8b6de86 100644
--- a/src/core/project.cpp
+++ b/src/core/project.cpp
@@ -55,6 +55,10 @@ void Project::setCombineMode(bool is_combine_mode) {
std::vector<IdentificationGroup *> Project::getIdentificationGroupList() {
return _identification_goup_list;
}
+
+ const std::vector<IdentificationGroup *> Project::getIdentificationGroupList() const {
+ return _identification_goup_list;
+ }
const GroupingType Project::getGroupingType() const {
return _grouping_type;
}
diff --git a/src/core/project.h b/src/core/project.h
index cbf721250a1cde53cc6ee525f730cebf96057a72..ead40c37eaaa4105f93bc7e8ac486c955b40f560 100644
--- a/src/core/project.h
+++ b/src/core/project.h
@@ -61,6 +61,7 @@ public:
const GroupingType getGroupingType() const;
std::vector<IdentificationGroup *> getIdentificationGroupList();
+ const std::vector<IdentificationGroup *> getIdentificationGroupList() const;
void setCombineMode(bool is_combine_mode);
bool isCombineMode() const;
void readResultFile(QString filename);
diff --git a/src/gui/export_spreadsheet_dialog/export_spreadsheet_dialog.ui b/src/gui/export_spreadsheet_dialog/export_spreadsheet_dialog.ui
new file mode 100644
index 0000000000000000000000000000000000000000..552ad3a8c348b542e969c1983e76b61d0219b72b
--- /dev/null
+++ b/src/gui/export_spreadsheet_dialog/export_spreadsheet_dialog.ui
@@ -0,0 +1,129 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<ui version="4.0">
+ <class>ExportSpreadsheetDialog</class>
+ <widget class="QWidget" name="ExportSpreadsheetDialog">
+ <property name="geometry">
+ <rect>
+ <x>0</x>
+ <y>0</y>
+ <width>573</width>
+ <height>559</height>
+ </rect>
+ </property>
+ <property name="windowTitle">
+ <string>Form</string>
+ </property>
+ <layout class="QVBoxLayout" name="verticalLayout_2">
+ <item>
+ <widget class="QGroupBox" name="groupBox">
+ <property name="title">
+ <string>Available spreadsheets</string>
+ </property>
+ <layout class="QVBoxLayout" name="verticalLayout_3">
+ <item>
+ <widget class="QCheckBox" name="simple_checkbox">
+ <property name="text">
+ <string>simple protein and peptide list</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QCheckBox" name="checkBox_2">
+ <property name="text">
+ <string>CheckBox</string>
+ </property>
+ </widget>
+ </item>
+ </layout>
+ </widget>
+ </item>
+ <item>
+ <layout class="QHBoxLayout" name="horizontalLayout">
+ <item>
+ <spacer name="horizontalSpacer">
+ <property name="orientation">
+ <enum>Qt::Horizontal</enum>
+ </property>
+ <property name="sizeHint" stdset="0">
+ <size>
+ <width>40</width>
+ <height>20</height>
+ </size>
+ </property>
+ </spacer>
+ </item>
+ <item>
+ <widget class="QPushButton" name="pushButton_2">
+ <property name="text">
+ <string>Cancel</string>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QPushButton" name="pushButton">
+ <property name="text">
+ <string>OK</string>
+ </property>
+ </widget>
+ </item>
+ </layout>
+ </item>
+ </layout>
+ </widget>
+ <resources/>
+ <connections>
+ <connection>
+ <sender>pushButton</sender>
+ <signal>clicked()</signal>
+ <receiver>ExportSpreadsheetDialog</receiver>
+ <slot>accept()</slot>
+ <hints>
+ <hint type="sourcelabel">
+ <x>522</x>
+ <y>415</y>
+ </hint>
+ <hint type="destinationlabel">
+ <x>286</x>
+ <y>279</y>
+ </hint>
+ </hints>
+ </connection>
+ <connection>
+ <sender>pushButton_2</sender>
+ <signal>clicked()</signal>
+ <receiver>ExportSpreadsheetDialog</receiver>
+ <slot>reject()</slot>
+ <hints>
+ <hint type="sourcelabel">
+ <x>436</x>
+ <y>415</y>
+ </hint>
+ <hint type="destinationlabel">
+ <x>286</x>
+ <y>279</y>
+ </hint>
+ </hints>
+ </connection>
+ <connection>
+ <sender>simple_checkbox</sender>
+ <signal>toggled(bool)</signal>
+ <receiver>ExportSpreadsheetDialog</receiver>
+ <slot>doSimpleProteinPeptideList(bool)</slot>
+ <hints>
+ <hint type="sourcelabel">
+ <x>115</x>
+ <y>110</y>
+ </hint>
+ <hint type="destinationlabel">
+ <x>633</x>
+ <y>369</y>
+ </hint>
+ </hints>
+ </connection>
+ </connections>
+ <slots>
+ <slot>reject()</slot>
+ <slot>accept()</slot>
+ <slot>doSimpleProteinPeptideList(bool)</slot>
+ </slots>
+</ui>
diff --git a/src/gui/export_spreadsheet_dialog/exportspreadsheetdialog.cpp b/src/gui/export_spreadsheet_dialog/exportspreadsheetdialog.cpp
new file mode 100644
index 0000000000000000000000000000000000000000..044433b817b3a0c1ef6847985c81264d6a419fee
--- /dev/null
+++ b/src/gui/export_spreadsheet_dialog/exportspreadsheetdialog.cpp
@@ -0,0 +1,70 @@
+
+/*******************************************************************************
+* Copyright (c) 2017 Olivier Langella <olivier.langella@u-psud.fr>.
+*
+* This file is part of XTPcpp.
+*
+* XTPcpp is free software: you can redistribute it and/or modify
+* it under the terms of the GNU General Public License as published by
+* the Free Software Foundation, either version 3 of the License, or
+* (at your option) any later version.
+*
+* XTPcpp is distributed in the hope that it will be useful,
+* but WITHOUT ANY WARRANTY; without even the implied warranty of
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+* GNU General Public License for more details.
+*
+* You should have received a copy of the GNU General Public License
+* along with XTPcpp. If not, see <http://www.gnu.org/licenses/>.
+*
+* Contributors:
+* Olivier Langella <olivier.langella@u-psud.fr> - initial API and implementation
+******************************************************************************/
+
+#include "ui_export_spreadsheet_dialog.h"
+#include "exportspreadsheetdialog.h"
+#include <QDebug>
+#include <QSettings>
+
+ExportSpreadsheetDialog::ExportSpreadsheetDialog(QWidget * parent):
+ QDialog(parent),
+ ui(new Ui::ExportSpreadsheetDialog)
+{
+ qDebug() << "ExportSpreadsheetDialog::ExportSpreadsheetDialog begin";
+ ui->setupUi(this);
+ this->setModal(true);
+
+
+
+ QSettings settings;
+ ui->simple_checkbox->setCheckState(Qt::Unchecked);
+ if (settings.value("export_ods/simple", "true").toBool()) {
+ ui->simple_checkbox->setCheckState(Qt::Checked);
+ }
+ //param.setFilterCrossSamplePeptideNumber(settings.value("automatic_filter/cross_sample", "true").toBool());
+
+#if QT_VERSION >= 0x050000
+ // Qt5 code
+ /*
+ connect(&workerThread, &QThread::finished, worker, &QObject::deleteLater);
+ connect(this, &PtSpectrumViewer::operateMsDataFile, worker, &PwizLoaderThread::doMsDataFileLoad);
+ connect(worker, &PwizLoaderThread::msDataReady, this, &PtSpectrumViewer::handleMsDataFile);
+ */
+#else
+// Qt4 code
+
+#endif
+
+ qDebug() << "ExportSpreadsheetDialog::ExportSpreadsheetDialog end";
+}
+
+ExportSpreadsheetDialog::~ExportSpreadsheetDialog()
+{
+ delete ui;
+}
+
+void ExportSpreadsheetDialog::doSimpleProteinPeptideList(bool simple) {
+
+ QSettings settings;
+ settings.setValue("export_ods/simple", QString("%1").arg(simple));
+}
diff --git a/src/gui/export_spreadsheet_dialog/exportspreadsheetdialog.h b/src/gui/export_spreadsheet_dialog/exportspreadsheetdialog.h
new file mode 100644
index 0000000000000000000000000000000000000000..d8d096923d4db9540b52273b409990f9f00eb5b0
--- /dev/null
+++ b/src/gui/export_spreadsheet_dialog/exportspreadsheetdialog.h
@@ -0,0 +1,56 @@
+
+/*******************************************************************************
+* Copyright (c) 2017 Olivier Langella <olivier.langella@u-psud.fr>.
+*
+* This file is part of XTPcpp.
+*
+* XTPcpp is free software: you can redistribute it and/or modify
+* it under the terms of the GNU General Public License as published by
+* the Free Software Foundation, either version 3 of the License, or
+* (at your option) any later version.
+*
+* XTPcpp is distributed in the hope that it will be useful,
+* but WITHOUT ANY WARRANTY; without even the implied warranty of
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+* GNU General Public License for more details.
+*
+* You should have received a copy of the GNU General Public License
+* along with XTPcpp. If not, see <http://www.gnu.org/licenses/>.
+*
+* Contributors:
+* Olivier Langella <olivier.langella@u-psud.fr> - initial API and implementation
+******************************************************************************/
+
+#ifndef EXPORTSPREADSHEETDIALOG_H
+#define EXPORTSPREADSHEETDIALOG_H
+
+#include <QDialog>
+#include <QStringListModel>
+#include "../project_view/automatic_filter_widget/automaticfilterwidget.h"
+
+
+namespace Ui {
+class ExportSpreadsheetDialog;
+}
+
+class ProjectWindow;
+
+class ExportSpreadsheetDialog : public QDialog
+{
+ Q_OBJECT
+
+public:
+ explicit ExportSpreadsheetDialog(QWidget * parent);
+ ~ExportSpreadsheetDialog();
+
+
+public slots:
+ void doSimpleProteinPeptideList(bool simple);
+signals:
+
+private:
+ Ui::ExportSpreadsheetDialog *ui;
+
+};
+
+#endif // EXPORTSPREADSHEETDIALOG_H
diff --git a/src/gui/load_results_dialog/loadresultsdialog.h b/src/gui/load_results_dialog/loadresultsdialog.h
index 5af69f86754783c53efc556abbf627eb86bb8dcf..fd33953176ad3d9012455a6ff61b5379461dd245 100644
--- a/src/gui/load_results_dialog/loadresultsdialog.h
+++ b/src/gui/load_results_dialog/loadresultsdialog.h
@@ -33,7 +33,6 @@ namespace Ui {
class LoadResultsDialog;
}
-class ProjectWindow;
class LoadResultsDialog : public QDialog
{
diff --git a/src/gui/mainwindow.cpp b/src/gui/mainwindow.cpp
index a01faae498c675f05d890853fcef4146ade2144e..c54779869126734137edd475676b04c601c99a25 100644
--- a/src/gui/mainwindow.cpp
+++ b/src/gui/mainwindow.cpp
@@ -30,7 +30,9 @@
#include "ui_main.h"
#include <pappsomspp/pappsoexception.h>
+#include <odsstream/odsdocwriter.h>
#include "../output/masschroqml.h"
+#include "../output/ods/odsexport.h"
void XtpLoaderThread::doXpipFileLoad(QString filename) {
@@ -90,6 +92,7 @@ MainWindow::MainWindow(QWidget *parent):
workerThread.start();
_p_load_results_dialog = new LoadResultsDialog(this);
+ _p_export_spreadsheet_dialog = new ExportSpreadsheetDialog(this);
_project_window = new ProjectWindow(this);
@@ -118,6 +121,7 @@ MainWindow::MainWindow(QWidget *parent):
connect(worker, SIGNAL(projectReady(ProjectSp)), this,SLOT(doProjectReady(ProjectSp)));
connect(this, SIGNAL(operateLoadingResults(bool,AutomaticFilterParameters,QStringList)), worker,SLOT(doLoadingResults(bool,AutomaticFilterParameters,QStringList)));
connect(_p_load_results_dialog, SIGNAL(accepted()), this,SLOT(doAcceptedLoadResultDialog()));
+ connect(_p_export_spreadsheet_dialog, SIGNAL(accepted()), this,SLOT(doAcceptedExportSpreadsheetDialog()));
connect(worker, SIGNAL(loadingMessage(QString)), this,SLOT(doDisplayLoadingMessage(QString)));
connect(worker, SIGNAL(projectNotReady(QString)), this,SLOT(doProjectNotReady(QString)));
/*
@@ -157,6 +161,35 @@ void MainWindow::doDisplayLoadingMessage(QString message) {
ui->statusbar->showMessage(message);
}
+void MainWindow::doAcceptedExportSpreadsheetDialog() {
+ qDebug() << "MainWindow::doAcceptedExportSpreadsheetDialog begin";
+ try {
+ QSettings settings;
+ QString default_location = settings.value("path/export_ods", "").toString();
+
+ QString filename = QFileDialog::getSaveFileName(this, tr("Save ODS file"),
+ QString("%1/untitled.ods").arg(default_location),
+ tr("Open Document Spreadsheet (*.ods)"));
+
+ if (filename.isEmpty()) {
+ return;
+ }
+
+ settings.setValue("path/export_ods", QFileInfo(filename).absolutePath());
+
+ OdsDocWriter writer(filename);
+ OdsExport export_ods(_project_sp.get());
+ export_ods.write(&writer);
+
+ writer.close();
+ //emit operateXpipFile(filename);
+ }
+ catch (pappso::PappsoException & error) {
+ viewError(tr("Error while writing ODS file :\n%1").arg(error.qwhat()));
+ }
+ qDebug() << "MainWindow::doAcceptedExportSpreadsheetDialog end";
+}
+
void MainWindow::doAcceptedLoadResultDialog() {
qDebug() << "MainWindow::doAcceptedLoadResultDialog begin";
AutomaticFilterParameters param = _p_load_results_dialog->getAutomaticFilterParameters();
@@ -227,12 +260,12 @@ void MainWindow::selectXpipFile() {
qDebug() << "MainWindow::doActionSpreadsheet begin";
try {
- _p_load_results_dialog->show();
- _p_load_results_dialog->raise();
- _p_load_results_dialog->activateWindow();
+ _p_export_spreadsheet_dialog->show();
+ _p_export_spreadsheet_dialog->raise();
+ _p_export_spreadsheet_dialog->activateWindow();
}
catch (pappso::PappsoException & error) {
- viewError(tr("Error while writing MassChroqML file :\n%1").arg(error.qwhat()));
+ viewError(tr("Error doActionSpreadsheet :\n%1").arg(error.qwhat()));
}
qDebug() << "MainWindow::doActionSpreadsheet end";
}
diff --git a/src/gui/mainwindow.h b/src/gui/mainwindow.h
index d926d2aaf1affc3b9c26b08ab190190c0acb9052..331850d8e764baf1c021fc26e95f4e221537ef94 100644
--- a/src/gui/mainwindow.h
+++ b/src/gui/mainwindow.h
@@ -38,6 +38,7 @@
#include "files/xpipfile.h"
#include "project_view/projectwindow.h"
#include "load_results_dialog/loadresultsdialog.h"
+#include "export_spreadsheet_dialog/exportspreadsheetdialog.h"
@@ -85,6 +86,7 @@ public slots:
void doProjectReady(ProjectSp project_sp);
void doProjectNotReady(QString error);
void doAcceptedLoadResultDialog();
+ void doAcceptedExportSpreadsheetDialog();
//void peptideEdited(QString peptideStr);
// void setColor(const QColor &color);
// void setShape(Shape shape);
@@ -109,6 +111,7 @@ private :
ProjectWindow * _project_window=nullptr;
LoadResultsDialog * _p_load_results_dialog=nullptr;
+ ExportSpreadsheetDialog * _p_export_spreadsheet_dialog;
};
diff --git a/src/gui/project_view/project_view.ui b/src/gui/project_view/project_view.ui
index 70b513cf0dca38c90076cc0e2eadd2f721b92bc2..bcff87cae093fc912e8936e7c7adb37cb86bd67f 100644
--- a/src/gui/project_view/project_view.ui
+++ b/src/gui/project_view/project_view.ui
@@ -21,7 +21,7 @@
<bool>true</bool>
</property>
<property name="currentIndex">
- <number>1</number>
+ <number>0</number>
</property>
<widget class="QWidget" name="identifications">
<attribute name="title">
diff --git a/src/output/ods/odsexport.cpp b/src/output/ods/odsexport.cpp
new file mode 100644
index 0000000000000000000000000000000000000000..1989724cc2495adb143fc1c08744ffae3bef177d
--- /dev/null
+++ b/src/output/ods/odsexport.cpp
@@ -0,0 +1,42 @@
+/**
+ * \file output/ods/odsexport.cpp
+ * \date 11/4/2017
+ * \author Olivier Langella
+ * \brief ODS export
+ */
+
+/*******************************************************************************
+* Copyright (c) 2017 Olivier Langella <olivier.langella@u-psud.fr>.
+*
+* This file is part of XTPcpp.
+*
+* XTPcpp is free software: you can redistribute it and/or modify
+* it under the terms of the GNU General Public License as published by
+* the Free Software Foundation, either version 3 of the License, or
+* (at your option) any later version.
+*
+* XTPcpp is distributed in the hope that it will be useful,
+* but WITHOUT ANY WARRANTY; without even the implied warranty of
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+* GNU General Public License for more details.
+*
+* You should have received a copy of the GNU General Public License
+* along with XTPcpp. If not, see <http://www.gnu.org/licenses/>.
+*
+* Contributors:
+* Olivier Langella <olivier.langella@u-psud.fr> - initial API and implementation
+******************************************************************************/
+
+#include "odsexport.h"
+#include "simplesheet.h"
+#include <QSettings>
+
+OdsExport::OdsExport(const Project * project):_p_project(project) {
+}
+
+void OdsExport::write(CalcWriterInterface * p_writer) {
+ QSettings settings;
+ if (settings.value("export_ods/simple", "false").toBool()) {
+ SimpleSheet(p_writer, _p_project);
+ }
+}
diff --git a/src/output/ods/odsexport.h b/src/output/ods/odsexport.h
new file mode 100644
index 0000000000000000000000000000000000000000..222af72b70aa6811b5a4e6ca177094e73d9535a1
--- /dev/null
+++ b/src/output/ods/odsexport.h
@@ -0,0 +1,47 @@
+/**
+ * \file output/ods/odsexport.h
+ * \date 11/4/2017
+ * \author Olivier Langella
+ * \brief ODS export
+ */
+
+/*******************************************************************************
+* Copyright (c) 2017 Olivier Langella <olivier.langella@u-psud.fr>.
+*
+* This file is part of XTPcpp.
+*
+* XTPcpp is free software: you can redistribute it and/or modify
+* it under the terms of the GNU General Public License as published by
+* the Free Software Foundation, either version 3 of the License, or
+* (at your option) any later version.
+*
+* XTPcpp is distributed in the hope that it will be useful,
+* but WITHOUT ANY WARRANTY; without even the implied warranty of
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+* GNU General Public License for more details.
+*
+* You should have received a copy of the GNU General Public License
+* along with XTPcpp. If not, see <http://www.gnu.org/licenses/>.
+*
+* Contributors:
+* Olivier Langella <olivier.langella@u-psud.fr> - initial API and implementation
+******************************************************************************/
+
+#ifndef ODSEXPORT_H
+#define ODSEXPORT_H
+
+#include "../../core/project.h"
+#include <odsstream/calcwriterinterface.h>
+
+class OdsExport
+{
+public:
+ OdsExport(const Project * project);
+
+ void write(CalcWriterInterface * p_writer);
+
+private:
+ const Project * _p_project;
+};
+
+#endif // ODSEXPORT_H
diff --git a/src/output/ods/simplesheet.cpp b/src/output/ods/simplesheet.cpp
new file mode 100644
index 0000000000000000000000000000000000000000..7f4517be5c3b9c8cb21107d7dca0e05f8655c454
--- /dev/null
+++ b/src/output/ods/simplesheet.cpp
@@ -0,0 +1,65 @@
+/**
+ * \file output/ods/simplesheet.h
+ * \date 11/4/2017
+ * \author Olivier Langella
+ * \brief ODS simple sheet
+ */
+
+/*******************************************************************************
+* Copyright (c) 2017 Olivier Langella <olivier.langella@u-psud.fr>.
+*
+* This file is part of XTPcpp.
+*
+* XTPcpp is free software: you can redistribute it and/or modify
+* it under the terms of the GNU General Public License as published by
+* the Free Software Foundation, either version 3 of the License, or
+* (at your option) any later version.
+*
+* XTPcpp is distributed in the hope that it will be useful,
+* but WITHOUT ANY WARRANTY; without even the implied warranty of
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+* GNU General Public License for more details.
+*
+* You should have received a copy of the GNU General Public License
+* along with XTPcpp. If not, see <http://www.gnu.org/licenses/>.
+*
+* Contributors:
+* Olivier Langella <olivier.langella@u-psud.fr> - initial API and implementation
+******************************************************************************/
+
+#include "simplesheet.h"
+#include "../../core/identificationgroup.h"
+
+SimpleSheet::SimpleSheet (CalcWriterInterface * p_writer, const Project * p_project): _p_project(p_project) {
+ _p_writer = p_writer;
+ p_writer->writeSheet("simple");
+
+ std::vector<IdentificationGroup *> identification_list = p_project->getIdentificationGroupList();
+
+ for (IdentificationGroup * p_ident:identification_list) {
+ writeIdentificationGroup(p_ident);
+ }
+}
+
+void SimpleSheet::writeIdentificationGroup(IdentificationGroup * p_ident) {
+
+ //_p_writer->writeSheet("simple");
+ const std::vector<MsRunSp> msrun_list = p_ident->getMsRunSpList();
+ _p_writer->writeCell("protein");
+ _p_writer->writeLine();
+ _p_writer->writeEmptyCell();
+ _p_writer->writeCell("peptide");
+ _p_writer->writeLine();
+ if (msrun_list.size() == 1) {
+ _p_writer->writeCell("sample");
+ _p_writer->writeLine();
+ _p_writer->writeCell(msrun_list[0].get()->getSampleName());
+ _p_writer->writeLine();
+ }
+
+ for (ProteinMatch * p_protein_match :p_ident->getProteinMatchList()) {
+ _p_writer->writeCell(p_protein_match->getProteinXtpSp().get()->getAccession());
+ _p_writer->writeLine();
+ }
+
+}
diff --git a/src/output/ods/simplesheet.h b/src/output/ods/simplesheet.h
new file mode 100644
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+++ b/src/output/ods/simplesheet.h
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+/**
+ * \file output/ods/simplesheet.h
+ * \date 11/4/2017
+ * \author Olivier Langella
+ * \brief ODS simple sheet
+ */
+
+/*******************************************************************************
+* Copyright (c) 2017 Olivier Langella <olivier.langella@u-psud.fr>.
+*
+* This file is part of XTPcpp.
+*
+* XTPcpp is free software: you can redistribute it and/or modify
+* it under the terms of the GNU General Public License as published by
+* the Free Software Foundation, either version 3 of the License, or
+* (at your option) any later version.
+*
+* XTPcpp is distributed in the hope that it will be useful,
+* but WITHOUT ANY WARRANTY; without even the implied warranty of
+* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+* GNU General Public License for more details.
+*
+* You should have received a copy of the GNU General Public License
+* along with XTPcpp. If not, see <http://www.gnu.org/licenses/>.
+*
+* Contributors:
+* Olivier Langella <olivier.langella@u-psud.fr> - initial API and implementation
+******************************************************************************/
+
+#ifndef SIMPLESHEET_H
+#define SIMPLESHEET_H
+
+#include "../../core/project.h"
+#include <odsstream/calcwriterinterface.h>
+#include "../../core/proteinmatch.h"
+
+class SimpleSheet
+{
+ public :
+ SimpleSheet (CalcWriterInterface * p_writer, const Project * p_project);
+private :
+ void writeIdentificationGroup(IdentificationGroup * p_ident);
+private :
+ const Project * _p_project;
+ CalcWriterInterface * _p_writer;
+};
+
+#endif // SIMPLESHEET_H