From 22820d0976c0e802850b39822f8bf90139693af3 Mon Sep 17 00:00:00 2001
From: Olivier Langella <Olivier.Langella@moulon.inra.fr>
Date: Wed, 14 Jun 2017 09:09:41 +0200
Subject: [PATCH] check for gb to get genbank accession
---
src/core/proteinxtp.cpp | 7 +++----
1 file changed, 3 insertions(+), 4 deletions(-)
diff --git a/src/core/proteinxtp.cpp b/src/core/proteinxtp.cpp
index 0ec15e07..dbb8fb36 100644
--- a/src/core/proteinxtp.cpp
+++ b/src/core/proteinxtp.cpp
@@ -180,10 +180,6 @@ void ProteinXtp::parseAccession2dbxref() {
_dbxref_list.push_back(DbXref(ExternalDatabase::AGI_LocusCode, temp.at(0)));
continue;
}
- if (ncbi_gi.indexIn(accession, 0) != -1) {
- _dbxref_list.push_back(DbXref(ExternalDatabase::NCBI_gi, accession));
- continue;
- }
if (swiss_prot.indexIn(accession, 0) != -1) {
qDebug() << "ProteinXtp::parseAccession2dbxref accession SwissProt " << accession;
@@ -208,6 +204,9 @@ void ProteinXtp::parseAccession2dbxref() {
if ((access_list.at(i-1) == "tr")&&(accession.size() == 6)) {
_dbxref_list.push_back(DbXref(ExternalDatabase::TrEMBL, accession));
}
+ if ((access_list.at(i-1) == "gb")&&(ncbi_gi.indexIn(accession, 0) != -1)) {
+ _dbxref_list.push_back(DbXref(ExternalDatabase::NCBI_gi, accession));
+ }
}
--
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