From 1d4e8f2ee93444993801f26af5f85c2d9b9206ec Mon Sep 17 00:00:00 2001
From: Olivier Langella <Olivier.Langella@moulon.inra.fr>
Date: Thu, 8 Jun 2017 17:20:52 +0200
Subject: [PATCH] check unique dbxref
---
src/core/proteinxtp.cpp | 15 +++++++++++++--
1 file changed, 13 insertions(+), 2 deletions(-)
diff --git a/src/core/proteinxtp.cpp b/src/core/proteinxtp.cpp
index ef3bba3f..c5551184 100644
--- a/src/core/proteinxtp.cpp
+++ b/src/core/proteinxtp.cpp
@@ -124,6 +124,7 @@ unsigned int ProteinXtp::countTrypticPeptidesForPAI() const {
void ProteinXtp::parseAccession2dbxref() {
+ qDebug() << "ProteinXtp::parseAccession2dbxref begin" ;
QStringList access_list = getAccession().split("\\|");
// if (access.length == 1)
QRegExp atg("^[Aa][Tt][MmCc1-5][Gg]\\d{5}\\.?\\d?$");
@@ -140,11 +141,11 @@ void ProteinXtp::parseAccession2dbxref() {
if (ncbi_gi.indexIn(accession, 0) != -1) {
_dbxref_list.push_back(std::make_pair(ExternalDatabase::NCBI_gi, accession));
}
-
+
if (swiss_prot.indexIn(accession, 0) != -1) {
_dbxref_list.push_back(std::make_pair(ExternalDatabase::SwissProt, accession));
}
-
+
if (trembl.indexIn(accession, 0) != -1) {
_dbxref_list.push_back(std::make_pair(ExternalDatabase::TrEMBL, accession));
}
@@ -152,6 +153,16 @@ void ProteinXtp::parseAccession2dbxref() {
_dbxref_list.push_back(std::make_pair(ExternalDatabase::ref, accession));
}
}
+
+ if (_dbxref_list.size() > 1) {
+ _dbxref_list.sort();
+ _dbxref_list.unique([] (const std::pair<ExternalDatabase, QString> & first, const std::pair<ExternalDatabase, QString> & second)
+ {
+ return ( first.first == second.first ) && (first.second == second.second);
+ });
+ }
+
+ qDebug() << "ProteinXtp::parseAccession2dbxref end" ;
}
--
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