From 17c0776786a6e230ac79accbe78649ec0eb4f937 Mon Sep 17 00:00:00 2001
From: Olivier Langella <olivier.langella@u-psud.fr>
Date: Thu, 15 Nov 2018 16:00:48 +0100
Subject: [PATCH] export report into TSV files
---
.../export_spreadsheet_dialog.ui | 26 +++++++++++++
.../exportspreadsheetdialog.cpp | 26 ++++++++++++-
.../exportspreadsheetdialog.h | 2 +
src/gui/mainwindow.cpp | 38 ++++++++++++++-----
src/gui/mainwindow.h | 7 ++--
src/gui/workerthread.cpp | 13 ++++---
src/gui/workerthread.h | 2 +-
7 files changed, 92 insertions(+), 22 deletions(-)
diff --git a/src/gui/export_spreadsheet_dialog/export_spreadsheet_dialog.ui b/src/gui/export_spreadsheet_dialog/export_spreadsheet_dialog.ui
index 8aa973a7..40975efd 100644
--- a/src/gui/export_spreadsheet_dialog/export_spreadsheet_dialog.ui
+++ b/src/gui/export_spreadsheet_dialog/export_spreadsheet_dialog.ui
@@ -152,6 +152,32 @@
</layout>
</widget>
</item>
+ <item>
+ <widget class="QGroupBox" name="formats_groupbox">
+ <property name="title">
+ <string>Formats</string>
+ </property>
+ <layout class="QHBoxLayout" name="horizontalLayout_2">
+ <item>
+ <widget class="QRadioButton" name="ods_radiobutton">
+ <property name="text">
+ <string>ODS spreadsheet (Excel or Li&breOffice)</string>
+ </property>
+ <property name="checked">
+ <bool>true</bool>
+ </property>
+ </widget>
+ </item>
+ <item>
+ <widget class="QRadioButton" name="tsv_radiobutton">
+ <property name="text">
+ <string>w&rite TSV files in a directory</string>
+ </property>
+ </widget>
+ </item>
+ </layout>
+ </widget>
+ </item>
</layout>
</widget>
</item>
diff --git a/src/gui/export_spreadsheet_dialog/exportspreadsheetdialog.cpp b/src/gui/export_spreadsheet_dialog/exportspreadsheetdialog.cpp
index 28231401..c4139d75 100644
--- a/src/gui/export_spreadsheet_dialog/exportspreadsheetdialog.cpp
+++ b/src/gui/export_spreadsheet_dialog/exportspreadsheetdialog.cpp
@@ -118,8 +118,17 @@ ExportSpreadsheetDialog::ExportSpreadsheetDialog(QWidget *parent)
{
ui->ptmspectra_checkbox->setCheckState(Qt::Checked);
}
- // param.setFilterCrossSamplePeptideNumber(settings.value("automatic_filter/cross_sample",
- // "true").toBool());
+ // param.setFilterCrossSamplePeptideNumber(settings.value("automatic_filter/cross_sample",
+ // "true").toBool());
+
+ if(settings.value("export_ods/format", "ods").toString() == "ods")
+ {
+ ui->ods_radiobutton->setChecked(true);
+ }
+ else
+ {
+ ui->tsv_radiobutton->setChecked(true);
+ }
#if QT_VERSION >= 0x050000
// Qt5 code
@@ -284,3 +293,16 @@ ExportSpreadsheetDialog::setProject(const Project *p_project)
ui->ptm_groupbox->setEnabled(false);
}
}
+
+QString
+ExportSpreadsheetDialog::getExportFormat() const
+{
+ QSettings settings;
+ QString format = "ods";
+ if(ui->tsv_radiobutton->isChecked())
+ {
+ format = "tsv";
+ }
+ settings.setValue("export_ods/format", format);
+ return format;
+}
diff --git a/src/gui/export_spreadsheet_dialog/exportspreadsheetdialog.h b/src/gui/export_spreadsheet_dialog/exportspreadsheetdialog.h
index f03559d0..807482cc 100644
--- a/src/gui/export_spreadsheet_dialog/exportspreadsheetdialog.h
+++ b/src/gui/export_spreadsheet_dialog/exportspreadsheetdialog.h
@@ -43,6 +43,8 @@ class ExportSpreadsheetDialog : public QDialog
public:
explicit ExportSpreadsheetDialog(QWidget *parent);
~ExportSpreadsheetDialog();
+
+ QString getExportFormat() const;
void setProject(const Project *p_project);
diff --git a/src/gui/mainwindow.cpp b/src/gui/mainwindow.cpp
index 1443d068..938cfcd8 100644
--- a/src/gui/mainwindow.cpp
+++ b/src/gui/mainwindow.cpp
@@ -194,36 +194,54 @@ MainWindow::doActionQuit()
void
MainWindow::doAcceptedExportSpreadsheetDialog()
{
- qDebug() << "MainWindow::doAcceptedExportSpreadsheetDialog begin";
+ qDebug() << __FILE__ << " " << __FUNCTION__ << " " << __LINE__;
try
{
+ QString format = this->_p_export_spreadsheet_dialog->getExportFormat();
QSettings settings;
QString default_location =
settings.value("path/export_ods", "").toString();
- QString filename = QFileDialog::getSaveFileName(
- this,
- tr("Save ODS file"),
- QString("%1/untitled.ods").arg(default_location),
- tr("Open Document Spreadsheet (*.ods);;tabulated text file (*.tsv)"));
-
+ QString filename;
+ if(format == "ods")
+ {
+ filename = QFileDialog::getSaveFileName(
+ this,
+ tr("Save ODS file"),
+ QString("%1/untitled.ods").arg(default_location),
+ tr("Open Document Spreadsheet (*.ods)"));
+
+ settings.setValue("path/export_ods",
+ QFileInfo(filename).absolutePath());
+ }
+ else
+ {
+ filename = QFileDialog::getExistingDirectory(
+ this, tr("Save TSV files"), QString("%1").arg(default_location));
+
+ QDir parent(filename);
+ parent.cdUp();
+ settings.setValue("path/export_ods", parent.canonicalPath());
+ qDebug() << __FILE__ << " " << __FUNCTION__ << " " << __LINE__ << " "
+ << parent.absolutePath();
+ }
if(filename.isEmpty())
{
return;
}
- settings.setValue("path/export_ods", QFileInfo(filename).absolutePath());
showWaitingMessage(
tr("writing %1 ODS file").arg(QFileInfo(filename).fileName()));
- emit operateWritingOdsFile(filename, _project_sp);
+ emit operateWritingOdsFile(filename, format, _project_sp);
// emit operateXpipFile(filename);
}
catch(pappso::PappsoException &error)
{
viewError(tr("Error while writing ODS file :\n%1").arg(error.qwhat()));
}
- qDebug() << "MainWindow::doAcceptedExportSpreadsheetDialog end";
+
+ qDebug() << __FILE__ << " " << __FUNCTION__ << " " << __LINE__;
}
void
diff --git a/src/gui/mainwindow.h b/src/gui/mainwindow.h
index 39922852..21762189 100644
--- a/src/gui/mainwindow.h
+++ b/src/gui/mainwindow.h
@@ -45,7 +45,7 @@
namespace Ui
{
- class Main;
+class Main;
}
class MainWindow : public QMainWindow
@@ -102,7 +102,8 @@ class MainWindow : public QMainWindow
AutomaticFilterParameters param,
QStringList file_list);
void operateWritingXpipFile(QString filename, ProjectSp project_sp);
- void operateWritingOdsFile(QString filename, ProjectSp project_sp);
+ void
+ operateWritingOdsFile(QString filename, QString format, ProjectSp project_sp);
void operateWritingMassChroqFile(QString filename, ProjectSp project_sp);
void operateWritingMassChroqPrmFile(QString filename, ProjectSp project_sp);
void operateWritingProticFile(QString filename, ProjectSp project_sp);
@@ -133,7 +134,7 @@ class MainWindow : public QMainWindow
WaitingMessageDialog *_p_waiting_message_dialog;
AboutDialog *_p_about_dialog = nullptr;
TandemRunDialog *_p_tandem_run_dialog = nullptr;
-
+
HttpVersion m_onlineVersion;
};
diff --git a/src/gui/workerthread.cpp b/src/gui/workerthread.cpp
index e76c0062..5c0d3dd4 100644
--- a/src/gui/workerthread.cpp
+++ b/src/gui/workerthread.cpp
@@ -505,19 +505,20 @@ WorkerThread::doWritingXpipFile(QString filename, ProjectSp project_sp)
}
}
void
-WorkerThread::doWritingOdsFile(QString filename, ProjectSp project_sp)
+WorkerThread::doWritingOdsFile(QString filename,
+ QString format,
+ ProjectSp project_sp)
{
try
{
-
- qDebug() << __FILE__ << " " << __FUNCTION__ << " " << __LINE__ ;
- QFileInfo file_info(filename);
+
+ qDebug() << __FILE__ << " " << __FUNCTION__ << " " << __LINE__;
CalcWriterInterface *p_writer = nullptr;
- if(file_info.suffix() == "tsv")
+ if(format == "tsv")
{
emit loadingMessage(tr("writing TSV files, please wait"));
- p_writer = new TsvDirectoryWriter (filename);
+ p_writer = new TsvDirectoryWriter(filename);
}
else
{
diff --git a/src/gui/workerthread.h b/src/gui/workerthread.h
index ba40f866..60168b56 100644
--- a/src/gui/workerthread.h
+++ b/src/gui/workerthread.h
@@ -59,7 +59,7 @@ class WorkerThread : public QObject
void doLoadingResults(bool is_individual, AutomaticFilterParameters param,
QStringList file_list);
void doWritingXpipFile(QString filename, ProjectSp project_sp);
- void doWritingOdsFile(QString filename, ProjectSp project_sp);
+ void doWritingOdsFile(QString filename, QString format, ProjectSp project_sp);
void doWritingMassChroqFile(QString filename, ProjectSp project_sp);
void doWritingMassChroqPrmFile(QString filename, ProjectSp project_sp);
void doWritingProticFile(QString filename, ProjectSp project_sp);
--
GitLab