From 0d70f987d7eee5f34e2032a317f773a0969de1d3 Mon Sep 17 00:00:00 2001
From: Olivier Langella <olivier.langella@u-psud.fr>
Date: Fri, 29 Sep 2017 21:13:56 +0200
Subject: [PATCH] label column added in spectra sheet
---
src/output/ods/spectrasheet.cpp | 17 +++++++++++++++--
1 file changed, 15 insertions(+), 2 deletions(-)
diff --git a/src/output/ods/spectrasheet.cpp b/src/output/ods/spectrasheet.cpp
index 90f179fe..f21fba7b 100644
--- a/src/output/ods/spectrasheet.cpp
+++ b/src/output/ods/spectrasheet.cpp
@@ -70,6 +70,10 @@ void SpectraSheet::writeHeaders(IdentificationGroup * p_ident) {
_p_writer->writeCell("Sequence (top)");
_p_writer->setCellAnnotation("peptide modifications (best match)");
_p_writer->writeCell("Modifs (top)");
+ if (_p_project->getLabelingMethodSp().get() != nullptr) {
+ _p_writer->setCellAnnotation("peptide label (best match)");
+ _p_writer->writeCell("Label (top)");
+ }
_p_writer->writeCell("Best E-value");
_p_writer->writeCell("Best hyperscore");
@@ -94,9 +98,18 @@ void SpectraSheet::writeBestPeptideMatch(const GroupingGroup * p_group,const Pep
_p_writer->writeCell(p_peptide_match->getRetentionTime());
_p_writer->writeCell(p_peptide_match->getPeptideXtpSp().get()->getSequence());
_p_writer->writeCell(p_peptide_match->getPeptideXtpSp().get()->getModifString());
+ if (_p_project->getLabelingMethodSp().get() != nullptr) {
+ const Label * p_label = p_peptide_match->getPeptideXtpSp().get()->getLabel();
+ if (p_label != nullptr) {
+ _p_writer->writeCell(p_label->getXmlId());
+ }
+ else {
+ _p_writer->writeEmptyCell();
+ }
+ }
_p_writer->writeCell(p_peptide_match->getEvalue());
_p_writer->writeCell(p_peptide_match->getParam(PeptideMatchParam::tandem_hyperscore).toDouble());
-
+
}
@@ -124,7 +137,7 @@ void SpectraSheet::writeIdentificationGroup(IdentificationGroup * p_ident) {
p_best_peptide_match = peptide_match;
}
//change spectra :
- unsigned int arank = p_best_peptide_match->getGrpPeptideSp().get()->getRank();
+ unsigned int arank = p_best_peptide_match->getGrpPeptideSp().get()->getRank();
unsigned int ascan = p_best_peptide_match->getScan();
unsigned int brank = peptide_match->getGrpPeptideSp().get()->getRank();
unsigned int bscan = peptide_match->getScan();
--
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