From 044ff91c93d510a580d6ee9091754e47433d5832 Mon Sep 17 00:00:00 2001
From: Olivier Langella <olivier.langella@u-psud.fr>
Date: Fri, 30 Nov 2018 11:00:25 +0100
Subject: [PATCH] count sample scan and not peptide
---
src/input/mascot/mascotdatparser.cpp | 1 +
src/output/mcqrspectralcount.cpp | 2 +-
2 files changed, 2 insertions(+), 1 deletion(-)
diff --git a/src/input/mascot/mascotdatparser.cpp b/src/input/mascot/mascotdatparser.cpp
index 28a7efd3..eb4e5c8d 100644
--- a/src/input/mascot/mascotdatparser.cpp
+++ b/src/input/mascot/mascotdatparser.cpp
@@ -828,6 +828,7 @@ MascotDatParser::savePeptideList(std::vector<PeptideLine> &peptide_list,
9 setPeaksUsedFromIons2(Integer.parseInt(st.nextToken()));
10 setPeaksUsedFromIons3(Integer.parseInt(st.nextToken()));
*/
+ // q2670_p1=0,1251.541000,0.004322,5,MDMTHVLAMR,27,010100000100,21.09,0001002000000000000,0,0;"Q9KPF4":0:411:420:1
qDebug() << __FILE__ << " " << __FUNCTION__ << " " << __LINE__;
if(peptide_line.peptide_string_list.size() < 8)
diff --git a/src/output/mcqrspectralcount.cpp b/src/output/mcqrspectralcount.cpp
index 7e6b28e7..7821a23b 100644
--- a/src/output/mcqrspectralcount.cpp
+++ b/src/output/mcqrspectralcount.cpp
@@ -204,6 +204,6 @@ McqrSpectralCount::writeOneProteinLabel(const pappso::GrpProtein *p_grp_protein,
_p_writer->writeCell(
(unsigned int)p_protein_match->getGroupingGroupSp()
.get()
- ->countSpecificSequenceLi(
+ ->countSpecificSampleScan(
p_protein_match, ValidationState::grouped, p_msrun, p_label));
}
--
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