xtandem_view_widget.ui 167 KB
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<?xml version="1.0" encoding="UTF-8"?>
<ui version="4.0">
 <class>XtandemParamWidget</class>
 <widget class="QWidget" name="XtandemParamWidget">
  <property name="geometry">
   <rect>
    <x>0</x>
    <y>0</y>
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    <width>1171</width>
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    <height>740</height>
   </rect>
  </property>
  <property name="windowTitle">
   <string>Form</string>
  </property>
  <layout class="QGridLayout" name="gridLayout_7">
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   <item row="1" column="4">
    <widget class="QTextEdit" name="textEdit">
     <property name="sizePolicy">
      <sizepolicy hsizetype="Fixed" vsizetype="Expanding">
       <horstretch>0</horstretch>
       <verstretch>0</verstretch>
      </sizepolicy>
     </property>
     <property name="minimumSize">
      <size>
       <width>350</width>
       <height>0</height>
      </size>
     </property>
    </widget>
   </item>
   <item row="1" column="3">
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    <widget class="QToolBox" name="EngineParameters">
     <widget class="QWidget" name="spectrum_page">
      <property name="geometry">
       <rect>
        <x>0</x>
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        <y>0</y>
        <width>783</width>
        <height>641</height>
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       </rect>
      </property>
      <attribute name="label">
       <string>Spectrum</string>
      </attribute>
      <layout class="QGridLayout" name="gridLayout_2">
       <item row="0" column="0">
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        <layout class="QGridLayout" name="gridLayout_6">
         <item row="2" column="2">
          <widget class="QToolButton" name="spmmep_push_button">
           <property name="autoFillBackground">
            <bool>false</bool>
           </property>
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           <property name="text">
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            <string/>
           </property>
           <property name="icon">
            <iconset resource="../../../xtpcpp.qrc">
             <normaloff>:/icon_info/resources/iconInfo.svg</normaloff>:/icon_info/resources/iconInfo.svg</iconset>
           </property>
           <property name="iconSize">
            <size>
             <width>20</width>
             <height>20</height>
            </size>
           </property>
           <property name="popupMode">
            <enum>QToolButton::DelayedPopup</enum>
           </property>
           <property name="toolButtonStyle">
            <enum>Qt::ToolButtonIconOnly</enum>
           </property>
           <property name="autoRaise">
            <bool>true</bool>
           </property>
           <property name="arrowType">
            <enum>Qt::NoArrow</enum>
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           </property>
          </widget>
         </item>
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         <item row="18" column="1">
          <widget class="QLineEdit" name="setNumberOfThreadsLineEdit">
           <property name="alignment">
            <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
           </property>
           <property name="readOnly">
            <bool>true</bool>
           </property>
          </widget>
         </item>
         <item row="16" column="1">
          <widget class="QLineEdit" name="alterHowProteinSequencesAreRetrievedFromFASTAFilesLineEdit">
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           <property name="alignment">
            <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
           </property>
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           <property name="readOnly">
            <bool>true</bool>
           </property>
          </widget>
         </item>
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         <item row="4" column="0">
          <widget class="QLabel" name="setTheMaximumPrecursorChargeToBeScoredLabel">
           <property name="text">
            <string>Set the maximum precursor charge to be scored</string>
           </property>
          </widget>
         </item>
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         <item row="1" column="0">
          <widget class="QLabel" name="parentIonMHMassToleranceLowerWindowLabel">
           <property name="text">
            <string>Parent ion MH+ mass tolerance lower window</string>
           </property>
          </widget>
         </item>
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         <item row="17" column="1">
          <widget class="QLineEdit" name="useContrastAngleLineEdit">
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           <property name="alignment">
            <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
           </property>
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           <property name="readOnly">
            <bool>true</bool>
           </property>
          </widget>
         </item>
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         <item row="15" column="0">
          <widget class="QLabel" name="minimumParentMHToBeConsideredLabel">
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           <property name="text">
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            <string>Minimum parent MH+ to be considered</string>
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           </property>
          </widget>
         </item>
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         <item row="15" column="1">
          <widget class="QLineEdit" name="minimumParentMHToBeConsideredLineEdit">
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           <property name="alignment">
            <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
           </property>
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           <property name="readOnly">
            <bool>true</bool>
           </property>
          </widget>
         </item>
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         <item row="16" column="0">
          <widget class="QLabel" name="alterHowProteinSequencesAreRetrievedFromFASTAFilesLabel">
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           <property name="text">
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            <string>Alter how protein sequences are retrieved from FASTA files</string>
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           </property>
          </widget>
         </item>
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         <item row="14" column="1">
          <widget class="QLineEdit" name="minimumMZFragmentToBeConsideredLineEdit">
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           <property name="alignment">
            <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
           </property>
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           <property name="readOnly">
            <bool>true</bool>
           </property>
          </widget>
         </item>
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         <item row="13" column="0">
          <widget class="QLabel" name="minimumNumberOfPeaksForASpectrumToBeConsideredLabel">
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           <property name="text">
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            <string>Minimum number of peaks for a spectrum to be considered</string>
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           </property>
          </widget>
         </item>
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         <item row="13" column="1">
          <widget class="QLineEdit" name="minimumNumberOfPeaksForASpectrumToBeConsideredLineEdit">
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           <property name="alignment">
            <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
           </property>
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           <property name="readOnly">
            <bool>true</bool>
           </property>
          </widget>
         </item>
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         <item row="12" column="1">
          <widget class="QLineEdit" name="maximumNumberOfPeaksToUseInASpectrumLineEdit">
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           <property name="alignment">
            <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
           </property>
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           <property name="readOnly">
            <bool>true</bool>
           </property>
          </widget>
         </item>
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         <item row="11" column="0">
          <widget class="QLabel" name="setTheDynamicRangeToScoreSpectraLabel">
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           <property name="text">
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            <string>Set the dynamic range to score spectra</string>
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           </property>
          </widget>
         </item>
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         <item row="11" column="1">
          <widget class="QLineEdit" name="setTheDynamicRangeToScoreSpectraLineEdit">
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           <property name="alignment">
            <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
           </property>
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           <property name="readOnly">
            <bool>true</bool>
           </property>
          </widget>
         </item>
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         <item row="12" column="0">
          <widget class="QLabel" name="maximumNumberOfPeaksToUseInASpectrumLabel">
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           <property name="text">
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            <string>Maximum number of peaks to use in a spectrum</string>
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           </property>
          </widget>
         </item>
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         <item row="10" column="1">
          <widget class="QLineEdit" name="neutralLossWindowDaltonsLineEdit">
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           <property name="alignment">
            <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
           </property>
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           <property name="readOnly">
            <bool>true</bool>
           </property>
          </widget>
         </item>
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         <item row="9" column="0">
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          <widget class="QLabel" name="neutralLossMassLabel">
           <property name="text">
            <string>Neutral loss mass</string>
           </property>
          </widget>
         </item>
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         <item row="9" column="1">
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          <widget class="QLineEdit" name="neutralLossMassLineEdit">
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           <property name="alignment">
            <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
           </property>
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           <property name="readOnly">
            <bool>true</bool>
           </property>
          </widget>
         </item>
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         <item row="10" column="0">
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          <widget class="QLabel" name="neutralLossWindowDaltonsLabel">
           <property name="text">
            <string>Neutral loss window (Daltons)</string>
           </property>
          </widget>
         </item>
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         <item row="8" column="1">
          <widget class="QLineEdit" name="controlTheUseOfTheNeutralLossWindowLineEdit">
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           <property name="alignment">
            <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
           </property>
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           <property name="readOnly">
            <bool>true</bool>
           </property>
          </widget>
         </item>
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         <item row="6" column="1">
          <widget class="QLineEdit" name="unitsForFragmentIonMassToleranceMonoisotopicLineEdit">
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           <property name="alignment">
            <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
           </property>
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           <property name="readOnly">
            <bool>true</bool>
           </property>
          </widget>
         </item>
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         <item row="7" column="0">
          <widget class="QLabel" name="fragmentIonMassToleranceMonoisotopicLabel">
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           <property name="text">
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            <string>Fragment ion mass tolerance (monoisotopic)</string>
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           </property>
          </widget>
         </item>
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         <item row="7" column="1">
          <widget class="QLineEdit" name="fragmentIonMassToleranceMonoisotopicLineEdit">
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           <property name="alignment">
            <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
           </property>
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          </widget>
         </item>
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         <item row="14" column="0">
          <widget class="QLabel" name="minimumMZFragmentToBeConsideredLabel">
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           <property name="text">
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            <string>Minimum m/z fragment to be considered</string>
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           </property>
          </widget>
         </item>
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         <item row="3" column="0">
          <widget class="QLabel" name="anticipateCarbonIsotopeParentIonAssignmentsErrorsLabel">
           <property name="text">
            <string>Anticipate carbon isotope parent ion assignments errors</string>
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           </property>
          </widget>
         </item>
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         <item row="2" column="0">
          <widget class="QLabel" name="parentIonMHMassToleranceUpperWindowLabel">
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           <property name="text">
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            <string>Parent ion MH+ mass tolerance upper window</string>
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           </property>
          </widget>
         </item>
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         <item row="2" column="1">
          <widget class="QLineEdit" name="parentIonMHMassToleranceUpperWindowLineEdit">
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           <property name="alignment">
            <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
           </property>
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           <property name="readOnly">
            <bool>true</bool>
           </property>
          </widget>
         </item>
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         <item row="5" column="1">
          <widget class="QLineEdit" name="useChemicalAverageOrMonoisotopicMassForFragmentIonsLineEdit">
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           <property name="alignment">
            <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
           </property>
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           <property name="readOnly">
            <bool>true</bool>
           </property>
          </widget>
         </item>
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         <item row="4" column="1">
          <widget class="QLineEdit" name="setTheMaximumPrecursorChargeToBeScoredLineEdit">
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           <property name="alignment">
            <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
           </property>
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           <property name="readOnly">
            <bool>true</bool>
           </property>
          </widget>
         </item>
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         <item row="8" column="0">
          <widget class="QLabel" name="controlTheUseOfTheNeutralLossWindowLabel">
           <property name="text">
            <string>Control the use of the neutral loss window</string>
           </property>
          </widget>
         </item>
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         <item row="17" column="0">
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          <widget class="QLabel" name="useContrastAngleLabel">
           <property name="text">
            <string>Use contrast angle</string>
           </property>
          </widget>
         </item>
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         <item row="5" column="0">
          <widget class="QLabel" name="useChemicalAverageOrMonoisotopicMassForFragmentIonsLabel">
           <property name="text">
            <string>Use chemical average or monoisotopic mass for fragment ions</string>
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           </property>
          </widget>
         </item>
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         <item row="6" column="0">
          <widget class="QLabel" name="unitsForFragmentIonMassToleranceMonoisotopicLabel">
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           <property name="text">
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            <string>Units for fragment ion mass tolerance (monoisotopic)</string>
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           </property>
          </widget>
         </item>
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         <item row="1" column="1">
          <widget class="QLineEdit" name="parentIonMHMassToleranceLowerWindowLineEdit">
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           <property name="alignment">
            <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
           </property>
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           <property name="readOnly">
            <bool>true</bool>
           </property>
          </widget>
         </item>
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         <item row="3" column="1">
          <widget class="QLineEdit" name="anticipateCarbonIsotopeParentIonAssignmentsErrorsLineEdit">
           <property name="alignment">
            <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
           </property>
           <property name="readOnly">
            <bool>true</bool>
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           </property>
          </widget>
         </item>
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         <item row="18" column="0">
          <widget class="QLabel" name="setNumberOfThreadsLabel">
           <property name="text">
            <string>Set number of threads</string>
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           </property>
          </widget>
         </item>
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         <item row="0" column="1">
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          <widget class="QLineEdit" name="parenttIonMHMassToleranceWindowUnitLineEdit">
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           <property name="alignment">
            <set>Qt::AlignRight|Qt::AlignTrailing|Qt::AlignVCenter</set>
           </property>
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           <property name="readOnly">
            <bool>true</bool>
           </property>
          </widget>
         </item>
         <item row="0" column="0">
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          <widget class="QLabel" name="parenttIonMHMassToleranceWindowUnitLabel">
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           <property name="text">
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            <string>Parentt ion MH+ mass tolerance window unit</string>
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           </property>
          </widget>
         </item>
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         <item row="1" column="2">
          <widget class="QToolButton" name="spmmem_push_button">
           <property name="autoFillBackground">
            <bool>false</bool>
           </property>
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           <property name="text">
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            <string/>
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           </property>
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           <property name="icon">
            <iconset resource="../../../xtpcpp.qrc">
             <normaloff>:/icon_info/resources/iconInfo.svg</normaloff>:/icon_info/resources/iconInfo.svg</iconset>
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           </property>
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           <property name="iconSize">
            <size>
             <width>20</width>
             <height>20</height>
            </size>
           </property>
           <property name="popupMode">
            <enum>QToolButton::DelayedPopup</enum>
           </property>
           <property name="toolButtonStyle">
            <enum>Qt::ToolButtonIconOnly</enum>
           </property>
           <property name="autoRaise">
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            <bool>true</bool>
           </property>
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           <property name="arrowType">
            <enum>Qt::NoArrow</enum>
           </property>
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          </widget>
         </item>
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         <item row="0" column="2">
          <widget class="QToolButton" name="spmmeu_push_button">
           <property name="autoFillBackground">
            <bool>false</bool>
           </property>
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           <property name="text">
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            <string/>
           </property>
           <property name="icon">
            <iconset resource="../../../xtpcpp.qrc">
             <normaloff>:/icon_info/resources/iconInfo.svg</normaloff>:/icon_info/resources/iconInfo.svg</iconset>
           </property>
           <property name="iconSize">
            <size>
             <width>20</width>
             <height>20</height>
            </size>
           </property>
           <property name="popupMode">
            <enum>QToolButton::DelayedPopup</enum>
           </property>
           <property name="toolButtonStyle">
            <enum>Qt::ToolButtonIconOnly</enum>
           </property>
           <property name="autoRaise">
            <bool>true</bool>
           </property>
           <property name="arrowType">
            <enum>Qt::NoArrow</enum>
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           </property>
          </widget>
         </item>
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         <item row="3" column="2">
          <widget class="QToolButton" name="spmmie_push_button">
           <property name="autoFillBackground">
            <bool>false</bool>
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           </property>
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           <property name="text">
            <string/>
           </property>
           <property name="icon">
            <iconset resource="../../../xtpcpp.qrc">
             <normaloff>:/icon_info/resources/iconInfo.svg</normaloff>:/icon_info/resources/iconInfo.svg</iconset>
           </property>
           <property name="iconSize">
            <size>
             <width>20</width>
             <height>20</height>
            </size>
           </property>
           <property name="popupMode">
            <enum>QToolButton::DelayedPopup</enum>
           </property>
           <property name="toolButtonStyle">
            <enum>Qt::ToolButtonIconOnly</enum>
           </property>
           <property name="autoRaise">
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            <bool>true</bool>
           </property>
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           <property name="arrowType">
            <enum>Qt::NoArrow</enum>
           </property>
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          </widget>
         </item>
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         <item row="4" column="2">
          <widget class="QToolButton" name="smpc_push_button">
           <property name="autoFillBackground">
            <bool>false</bool>
           </property>
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           <property name="text">
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            <string/>
           </property>
           <property name="icon">
            <iconset resource="../../../xtpcpp.qrc">
             <normaloff>:/icon_info/resources/iconInfo.svg</normaloff>:/icon_info/resources/iconInfo.svg</iconset>
           </property>
           <property name="iconSize">
            <size>
             <width>20</width>
             <height>20</height>
            </size>
           </property>
           <property name="popupMode">
            <enum>QToolButton::DelayedPopup</enum>
           </property>
           <property name="toolButtonStyle">
            <enum>Qt::ToolButtonIconOnly</enum>
           </property>
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           <property name="arrowType">
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         <item row="6" column="2">
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         <item row="7" column="2">
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           <property name="arrowType">
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         <item row="8" column="2">
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         <item row="9" column="2">
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           <property name="text">
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           <property name="arrowType">
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          </widget>
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         <item row="10" column="2">
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         <item row="11" column="2">
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           <property name="arrowType">
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         <item row="12" column="2">
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         <item row="13" column="2">
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           <property name="text">
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           <property name="arrowType">
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         <item row="14" column="2">
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           <property name="arrowType">
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         <item row="17" column="2">
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           <property name="arrowType">
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     <widget class="QWidget" name="protein_page">
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        <height>524</height>
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       <string>Protein</string>
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      <layout class="QFormLayout" name="formLayout_3">
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