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  • PAPPSO
  • MassChroQMassChroQ
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  • #10

Closed
Open
Created Feb 16, 2021 by Thierry Balliau@thierry.balliauOwner

execution en erreur sur un fichier particulier

tballiau@proteus1:/gorgone/pappso/tmp/xtpcpp.Nlatbq$ tail -F masschroq.0.error Oops! an error occurred in MassChroQ. Dont Panic : error reading masschroqML input file '/gorgone/pappso/moulon/users/thierry/20210202_bourguignon_26_cytosol/export/QC.masschroqml' : Parse error at line 80, column 175: problem creating msrun msrunb76: problem creating msrun msrunb76: error reading xml input file '/gorgone/pappso/moulon/raw/20210129_Bourguignon_26_cytosol/20201203_bourguignon_26_cytosol_Ns1_F1.mzXML' : Pwiz spectrum index 0 not found in MS file std::runtime_error : [SpectrumList_mzXML::spectrum()] Error seeking to .

le fichier mzxml semble ok mais pwiz semble ne pas reussir a le lire (il ne posep as de probleme a xtandem)

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