Commits · 005db2be0fa2a7449804280cc5f0cea1b044d7be · PAPPSO / MassChroQ

07 Sep, 2013 1 commit
- obsolete directories removed · 005db2be
  Olivier Langella authored Sep 07, 2013
  
  005db2be
12 Sep, 2012 1 commit

first version of alignment monitor · 74d95787

Edlira Nano authored Sep 12, 2012

git-svn-id: https://subversion.renater.fr/masschroq/trunk@2416 e4b6dbb4-9209-464b-83f7-6257456c460c

74d95787

07 Sep, 2012 1 commit

added .time values attributes to schema · 73a99af9

Edlira Nano authored Sep 07, 2012

git-svn-id: https://subversion.renater.fr/masschroq/trunk@2408 e4b6dbb4-9209-464b-83f7-6257456c460c

73a99af9

03 Sep, 2012 1 commit

added --validate option · b5e548a1

Edlira Nano authored Sep 03, 2012

git-svn-id: https://subversion.renater.fr/masschroq/trunk@2407 e4b6dbb4-9209-464b-83f7-6257456c460c

b5e548a1

18 Jan, 2012 1 commit

preparing post matching release 2 · 75d8614d

Edlira Nano authored Jan 18, 2012

git-svn-id: https://subversion.renater.fr/masschroq/trunk@2260 e4b6dbb4-9209-464b-83f7-6257456c460c

75d8614d

12 Jan, 2012 1 commit

added alignment results to masschroqML · 541c8b6f

Edlira Nano authored Jan 12, 2012

git-svn-id: https://subversion.renater.fr/masschroq/trunk@2256 e4b6dbb4-9209-464b-83f7-6257456c460c

541c8b6f

10 Oct, 2011 1 commit

merged post-branching with tunk · 8bb7a671

Edlira Nano authored Oct 10, 2011

git-svn-id: https://subversion.renater.fr/masschroq/trunk@2225 e4b6dbb4-9209-464b-83f7-6257456c460c

8bb7a671

02 May, 2011 1 commit

removed translation + changed doc · 1694ccba

Edlira Nano authored May 02, 2011

git-svn-id: https://subversion.renater.fr/masschroq/trunk@2097 e4b6dbb4-9209-464b-83f7-6257456c460c

1694ccba

12 Apr, 2011 2 commits

removed unnecessary optional attributes in masschroqML schema and example · 7485fee0
Edlira Nano authored Apr 12, 2011
```
git-svn-id: https://subversion.renater.fr/masschroq/trunk@2066 e4b6dbb4-9209-464b-83f7-6257456c460c
```
7485fee0

1-added mods to all results->to masschroqml schema too and 2-debugged... · 467216c6

Edlira Nano authored Apr 12, 2011

1-added mods to all results->to masschroqml schema too and 2-debugged masschroqml schema : in <execution_time> seconds attribute replaced milliseconds attribute, added missing rt and mz attributes to <search>

git-svn-id: https://subversion.renater.fr/masschroq/trunk@2063 e4b6dbb4-9209-464b-83f7-6257456c460c

467216c6

26 Jan, 2011 1 commit

addedd Reporter + masschroq's user manual · a268edfd

Edlira Nano authored Jan 26, 2011

git-svn-id: https://subversion.renater.fr/masschroq/trunk@1951 e4b6dbb4-9209-464b-83f7-6257456c460c

a268edfd

21 Jan, 2011 1 commit
- masschroqXML schema completed with output results + validated schema + validated example outputfile · cb694eaa
  Edlira Nano authored Jan 21, 2011
```
git-svn-id: https://subversion.renater.fr/masschroq/trunk@1950 e4b6dbb4-9209-464b-83f7-6257456c460c
```
  cb694eaa
17 Jan, 2011 1 commit
- xmlOutput: added xic traces with encoded data + all is working · 6fd5d0e1
  Edlira Nano authored Jan 17, 2011
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git-svn-id: https://subversion.renater.fr/masschroq/trunk@1947 e4b6dbb4-9209-464b-83f7-6257456c460c
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  6fd5d0e1
12 Jan, 2011 1 commit
- XML output first working version, with quantification data, no xic traces yet · 776ffebe
  Edlira Nano authored Jan 12, 2011
```
git-svn-id: https://subversion.renater.fr/masschroq/trunk@1943 e4b6dbb4-9209-464b-83f7-6257456c460c
```
  776ffebe
11 Jan, 2011 1 commit

Changed float types to mcq_doubles · 39e1b033

Edlira Nano authored Jan 11, 2011

git-svn-id: https://subversion.renater.fr/masschroq/trunk@1939 e4b6dbb4-9209-464b-83f7-6257456c460c

39e1b033

03 Jan, 2011 1 commit

Not major changes in quantif results : removed some redondant calculus while... · 362ad4f7

Edlira Nano authored Jan 03, 2011

Not major changes in quantif results : removed some redondant calculus while writing to output files

git-svn-id: https://subversion.renater.fr/masschroq/trunk@1932 e4b6dbb4-9209-464b-83f7-6257456c460c

362ad4f7

15 Dec, 2010 1 commit

Dom parsing peptide files finished, youpiiiii · f51e2307

Edlira Nano authored Dec 15, 2010

git-svn-id: https://subversion.renater.fr/masschroq/trunk@1916 e4b6dbb4-9209-464b-83f7-6257456c460c

f51e2307

08 Dec, 2010 1 commit

Continuing pep parser: not finished · fb9bdc28

Edlira Nano authored Dec 08, 2010

git-svn-id: https://subversion.renater.fr/masschroq/trunk@1909 e4b6dbb4-9209-464b-83f7-6257456c460c

fb9bdc28

03 Dec, 2010 1 commit

srm mode advanced but left for later · 56720e26

Edlira Nano authored Dec 03, 2010

git-svn-id: https://subversion.renater.fr/masschroq/trunk@1903 e4b6dbb4-9209-464b-83f7-6257456c460c

56720e26

19 Nov, 2010 1 commit
- mzML parser implemented : first tested working version, needs clean-up + controls · 1ac1eabe
  Edlira Nano authored Nov 19, 2010
```
git-svn-id: https://subversion.renater.fr/masschroq/trunk@1894 e4b6dbb4-9209-464b-83f7-6257456c460c
```
  1ac1eabe
02 Nov, 2010 2 commits

changing name : finished · d0551dd4

Edlira Nano authored Nov 02, 2010

git-svn-id: https://subversion.renater.fr/masschroq/trunk@1871 e4b6dbb4-9209-464b-83f7-6257456c460c

d0551dd4

Changed names continue · e7a94389

Edlira Nano authored Nov 02, 2010


git-svn-id: https://subversion.renater.fr/masschroq/trunk@1868 e4b6dbb4-9209-464b-83f7-6257456c460c

e7a94389

28 Oct, 2010 2 commits

Debug : added call to debriefing() for he results files · 176b145f
Edlira Nano authored Oct 28, 2010
```
git-svn-id: https://subversion.renater.fr/masschroq/trunk@1865 e4b6dbb4-9209-464b-83f7-6257456c460c
```
176b145f

· b57cde65

Edlira Nano authored Oct 28, 2010

git-svn-id: https://subversion.renater.fr/masschroq/trunk@1863 e4b6dbb4-9209-464b-83f7-6257456c460c

b57cde65

21 Oct, 2010 1 commit

Finished xicTraces implementation · 5f62d10a

Olivier Langella authored Oct 21, 2010

git-svn-id: https://subversion.renater.fr/masschroq/trunk@1861 e4b6dbb4-9209-464b-83f7-6257456c460c

5f62d10a

15 Oct, 2010 1 commit

MSRun clean-up 2 : finished cleaning up : setNewTimeValues simplified. · e12abdcf

Olivier Langella authored Oct 15, 2010

Cascade alignment implemented in both obiwarp and ms2 alignments.

git-svn-id: https://subversion.renater.fr/masschroq/trunk@1859 e4b6dbb4-9209-464b-83f7-6257456c460c

e12abdcf

04 Oct, 2010 1 commit

AlignmentMs2 : added smooth before mapping · 2482002a

Olivier Langella authored Oct 04, 2010

git-svn-id: https://subversion.renater.fr/masschroq/trunk@1853 e4b6dbb4-9209-464b-83f7-6257456c460c

2482002a

30 Sep, 2010 1 commit

New abstract class XicTracesBase : from which derives TsvAllics,... · f7ea86ae

Olivier Langella authored Sep 30, 2010

New abstract class XicTracesBase : from which derives TsvAllics, TsvPeptideXics and the new type of traces TsvMzXics
+
added commentary on filters   

git-svn-id: https://subversion.renater.fr/masschroq/trunk@1851 e4b6dbb4-9209-464b-83f7-6257456c460c

f7ea86ae

27 Sep, 2010 1 commit

Two new classes : · 642c875a

Olivier Langella authored Sep 27, 2010

- MonitorList : list of QuantiMsCpp results 
- TsvPepListXics : list of peptides to trace the xics.

Debug AlignmentMs2::addFirstElement 


git-svn-id: https://subversion.renater.fr/masschroq/trunk@1849 e4b6dbb4-9209-464b-83f7-6257456c460c

642c875a

01 Sep, 2010 1 commit

Renaming : quantif_results_all_csv -> tsv_all_xics · ab7e52e2

Edlira Nano authored Sep 01, 2010

+
xml tag <csv_all_xics> -> <tsv_all_xics>

git-svn-id: https://subversion.renater.fr/masschroq/quanti/trunk@1801 e4b6dbb4-9209-464b-83f7-6257456c460c

ab7e52e2

19 Aug, 2010 1 commit

Removed alignment MS_INFO · 46ff73e4

Edlira Nano authored Aug 19, 2010

git-svn-id: https://subversion.renater.fr/masschroq/quanti/trunk@1777 e4b6dbb4-9209-464b-83f7-6257456c460c

46ff73e4

13 Aug, 2010 1 commit
- Debug schema : element align allowed unbounded (so we can align various groups) · 168cd4bb
  Edlira Nano authored Aug 13, 2010
```
git-svn-id: https://subversion.renater.fr/masschroq/quanti/trunk@1769 e4b6dbb4-9209-464b-83f7-6257456c460c
```
  168cd4bb
04 Aug, 2010 1 commit

XSD schema completely annotated · 4b0325c8

Edlira Nano authored Aug 04, 2010

git-svn-id: https://subversion.renater.fr/masschroq/quanti/trunk@1758 e4b6dbb4-9209-464b-83f7-6257456c460c

4b0325c8

26 Jul, 2010 1 commit

Alignment MS2 completed but not operational yet · 80359f4e

Edlira Nano authored Jul 26, 2010

git-svn-id: https://subversion.renater.fr/masschroq/quanti/trunk@1747 e4b6dbb4-9209-464b-83f7-6257456c460c

80359f4e

21 Jul, 2010 2 commits
- XIC information switched on : results of type <csv_allxics output_dir=""/> · 8eb8e270
  Edlira Nano authored Jul 21, 2010
```
git-svn-id: https://subversion.renater.fr/masschroq/quanti/trunk@1743 e4b6dbb4-9209-464b-83f7-6257456c460c
```
  8eb8e270
- csv_all_xicsType defined and documented · c46903fb
  Olivier Langella authored Jul 21, 2010
```
git-svn-id: https://subversion.renater.fr/masschroq/quanti/trunk@1742 e4b6dbb4-9209-464b-83f7-6257456c460c
```
  c46903fb
16 Jul, 2010 1 commit
- add an optional mean filter before detection Zivy, without modifying original signal · f1c143f6
  Olivier Langella authored Jul 16, 2010
```
git-svn-id: https://subversion.renater.fr/masschroq/quanti/trunk@1739 e4b6dbb4-9209-464b-83f7-6257456c460c
```
  f1c143f6
06 Jul, 2010 1 commit

- New version : get bestRt but dependant of Z like before. · 488120b1

Edlira Nano authored Jul 06, 2010

- Validation of xml file / xsdShema : schema changed + make install puts in on the system

git-svn-id: https://subversion.renater.fr/masschroq/quanti/trunk@1730 e4b6dbb4-9209-464b-83f7-6257456c460c

488120b1

17 May, 2010 1 commit

· 19bb70d7

Olivier Langella authored May 17, 2010

git-svn-id: https://subversion.renater.fr/masschroq/quanti/trunk@1680 e4b6dbb4-9209-464b-83f7-6257456c460c

19bb70d7

13 Apr, 2010 1 commit

introduction of alignment ms info method · 0d60a59c

Olivier Langella authored Apr 13, 2010

git-svn-id: https://subversion.renater.fr/masschroq/quanti/trunk@1650 e4b6dbb4-9209-464b-83f7-6257456c460c

0d60a59c