qpid first client + listener version

git-svn-id: https://subversion.renater.fr/masschroq/trunk@2070 e4b6dbb4-9209-464b-83f7-6257456c460c

masschroq/src/qpid/doc/install_qpid

+***********Installation Qpid**********************************
+
+Prendre le qpid-0.8.tar.gz Full source release sur le site.
+Le détarer où vous voulez.
+
+sudo apt-get install python-dev gcc ruby-dev libperl-dev libboost-all-dev uuid-dev doxygen libsasl2-dev libnss3-dev librdmacm-dev 
+
+***** Surtout ne pas installer libxerces-c : bug et si c'est déjà installé sur votre ordi le virer.
+
+dans qpid-0.8/cpp faire :
+./bootstrap
+./configure --prefix=/usr 
+	 ou --prefix=/usr/local/ 
+	 ou ce que vous voulez, mais il faut s'en rappeller parce qu'après faudra installer les autres clients au même endroit. Je vais appeller ça le rep. d'installation par la suite.
+sudo make install
+
+Si pb pendant le make m'appeller, j'en ai eu un à un moment que j'ai résolu mais je sais pas trop expliquer à quoi c'était du. 
+
+tester si le broker marche :
+qpidd 
+
+Si erreur m'appeller, moi ça marchait pas parce que j'ai installé ça dans /usr/local/ et il a fally que j'ajoute le /usr/local/lib dans mon LD path (j'ai fait ça en allant dans /usr/local/lib et en tapant sudo ldconfig)
+
+Maintenant on va installer des tools et des extras pour manager le broker, youpi :
+
+cd qpid-0.8/python
+sudo python setup.py install --prefix=votre rep. d'install
+cd qpid-0.8/extras
+pareil (sudo python setup.py...) 
+cd qpid-0.8/tools
+pareil
+
+Pour tester, avec le broker lancé (qpidd): 
+qpid-config
+Si pas d'erreur, c'est bon, vous avez réussi, trop fort :)
+

masschroq/src/qpid/doc/qpid-config-help

+Usage:  qpid-config [OPTIONS]
+        qpid-config [OPTIONS] exchanges [filter-string]
+        qpid-config [OPTIONS] queues    [filter-string]
+        qpid-config [OPTIONS] add exchange <type> <name> [AddExchangeOptions]
+        qpid-config [OPTIONS] del exchange <name>
+        qpid-config [OPTIONS] add queue <name> [AddQueueOptions]
+        qpid-config [OPTIONS] del queue <name> [DelQueueOptions]
+        qpid-config [OPTIONS] bind   <exchange-name> <queue-name> [binding-key]
+                  <for type xml>     [-f -|filename]
+                  <for type header>  [all|any] k1=v1 [, k2=v2...]
+        qpid-config [OPTIONS] unbind <exchange-name> <queue-name> [binding-key]
+
+Options:
+    --timeout seconds (10)                    Maximum time to wait for broker connection
+    -b [ --bindings ]                         Show bindings in queue or exchange list
+    -a [ --broker-addr ] Address (localhost)  Address of qpidd broker
+         broker-addr is in the form:   [username/password@] hostname | ip-address [:<port>]
+         ex:  localhost, 10.1.1.7:10000, broker-host:10000, guest/guest@localhost
+
+Add Queue Options:
+    --alternate-exchange [name of the alternate exchange]
+                         The alternate-exchange field specifies how messages on this queue should
+                         be treated when they are rejected by a subscriber, or when they are
+                         orphaned by queue deletion. When present, rejected or orphaned messages
+                         MUST be routed to the alternate-exchange. In all cases the messages MUST
+                         be removed from the queue.
+    --passive            Do not actually change the broker state (queue will not be created)
+    --durable            Queue is durable
+    --cluster-durable    Queue becomes durable if there is only one functioning cluster node
+    --file-count N (8)   Number of files in queue's persistence journal
+    --file-size  N (24)  File size in pages (64Kib/page)
+    --max-queue-size N   Maximum in-memory queue size as bytes
+    --max-queue-count N  Maximum in-memory queue size as a number of messages
+    --limit-policy [none | reject | flow-to-disk | ring | ring-strict]
+                         Action taken when queue limit is reached:
+                             none (default) - Use broker's default policy
+                             reject         - Reject enqueued messages
+                             flow-to-disk   - Page messages to disk
+                             ring           - Replace oldest unacquired message with new
+                             ring-strict    - Replace oldest message, reject if oldest is acquired
+    --order [fifo | lvq | lvq-no-browse]
+                         Set queue ordering policy:
+                             fifo (default) - First in, first out
+                             lvq            - Last Value Queue ordering, allows queue browsing
+                             lvq-no-browse  - Last Value Queue ordering, browsing clients may lose data
+    --generate-queue-events N
+                         If set to 1, every enqueue will generate an event that can be processed by
+                         registered listeners (e.g. for replication). If set to 2, events will be
+                         generated for enqueues and dequeues
+
+Del Queue Options:
+    --force               Force delete of queue even if it's currently used or it's not empty
+    --force-if-not-empty  Force delete of queue even if it's not empty
+    --force-if-used       Force delete of queue even if it's currently used
+
+Add Exchange <type> values:
+    direct     Direct exchange for point-to-point communication
+    fanout     Fanout exchange for broadcast communication
+    topic      Topic exchange that routes messages using binding keys with wildcards
+    headers    Headers exchange that matches header fields against the binding keys
+
+Add Exchange Options:
+    --alternate-exchange [name of the alternate exchange]
+                         In the event that a message cannot be routed, this is the name of the exchange to
+                         which the message will be sent. Messages transferred using message.transfer will
+                         be routed to the alternate-exchange only if they are sent with the "none"
+                         accept-mode, and the discard-unroutable delivery property is set to false, and
+                         there is no queue to route to for the given message according to the bindings
+                         on this exchange.
+    --passive            Do not actually change the broker state (exchange will not be created)
+    --durable            Exchange is durable
+    --sequence           Exchange will insert a 'qpid.msg_sequence' field in the message header
+                         with a value that increments for each message forwarded.
+    --ive                Exchange will behave as an 'initial-value-exchange', keeping a reference
+                         to the last message forwarded and enqueuing that message to newly bound
+                         queues.
+

masschroq/src/qpid/doc/qpid-route-help

+Usage:  qpid-route [OPTIONS] dynamic add <dest-broker> <src-broker> <exchange> [tag] [exclude-list]
+        qpid-route [OPTIONS] dynamic del <dest-broker> <src-broker> <exchange>
+
+        qpid-route [OPTIONS] route add   <dest-broker> <src-broker> <exchange> <routing-key> [tag] [exclude-list] [mechanism]
+        qpid-route [OPTIONS] route del   <dest-broker> <src-broker> <exchange> <routing-key>
+        qpid-route [OPTIONS] queue add   <dest-broker> <src-broker> <exchange> <queue>
+        qpid-route [OPTIONS] queue del   <dest-broker> <src-broker> <exchange> <queue>
+        qpid-route [OPTIONS] route list  [<dest-broker>]
+        qpid-route [OPTIONS] route flush [<dest-broker>]
+        qpid-route [OPTIONS] route map   [<broker>]
+
+        qpid-route [OPTIONS] link add  <dest-broker> <src-broker>
+        qpid-route [OPTIONS] link del  <dest-broker> <src-broker>
+        qpid-route [OPTIONS] link list [<dest-broker>]
+
+Options:
+    --timeout seconds (10)   Maximum time to wait for broker connection
+    -v [ --verbose ]         Verbose output
+    -q [ --quiet ]           Quiet output, don't print duplicate warnings
+    -d [ --durable ]         Added configuration shall be durable
+    -e [ --del-empty-link ]  Delete link after deleting last route on the link
+    -s [ --src-local ]       Make connection to source broker (push route)
+    --ack N                  Acknowledge transfers over the bridge in batches of N
+    -t <transport> [ --transport <transport>]
+                             Specify transport to use for links, defaults to tcp
+
+  dest-broker and src-broker are in the form:  [username/password@] hostname | ip-address [:<port>]
+  ex:  localhost, 10.1.1.7:10000, broker-host:10000, guest/guest@localhost
+

masschroq/src/qpid/doc/qpidd-help

+Usage: qpidd [OPTIONS]
+
+Options:
+
+  -h [ --help ]                        Displays the help message
+  -v [ --version ]                     Displays version information
+  --config FILE (etc/qpid/qpidd.conf)  Reads configuration from FILE
+
+Module options:
+  --module-dir DIR (lib/qpid/daemon)  Load all shareable modules in this 
+                                      directory
+  --load-module FILE                  Specifies additional module(s) to be 
+                                      loaded
+  --no-module-dir                     Don't load modules from module directory
+
+Broker Options:
+  --data-dir DIR (/home/enano/.qpidd)   Directory to contain persistent data 
+                                        generated by the broker
+  --no-data-dir                         Don't use a data directory.  No 
+                                        persistent configuration will be loaded
+                                        or stored
+  -p [ --port ] PORT (5672)             Tells the broker to listen on PORT
+  --worker-threads N (5)                Sets the broker thread pool size
+  --max-connections N (500)             Sets the maximum allowed connections
+  --connection-backlog N (10)           Sets the connection backlog limit for 
+                                        the server socket
+  -m [ --mgmt-enable ] yes|no (1)       Enable Management
+  --mgmt-qmf2 yes|no (0)                Use QMF v2 for Broker Management
+  --mgmt-pub-interval SECONDS (10)      Management Publish Interval
+  --queue-purge-interval SECONDS (600)  Interval between attempts to purge any 
+                                        expired messages from queues
+  --auth yes|no (1)                     Enable authentication, if disabled all 
+                                        incoming connections will be trusted
+  --realm REALM (QPID)                  Use the given realm when performing 
+                                        authentication
+  --default-queue-limit BYTES (104857600) 
+                                        Default maximum size for queues (in 
+                                        bytes)
+  --tcp-nodelay                         Set TCP_NODELAY on TCP connections
+  --require-encryption                  Only accept connections that are 
+                                        encrypted
+  --known-hosts-url URL or 'none'       URL to send as 'known-hosts' to clients
+                                        ('none' implies empty list)
+  --sasl-config FILE                    gets sasl config from nonstandard 
+                                        location
+  --max-session-rate MESSAGES/S (0)     Sets the maximum message rate per 
+                                        session (0=unlimited)
+  --async-queue-events yes|no (0)       Set Queue Events async, used for 
+                                        services like replication
+
+Logging options:
+  -t [ --trace ]                        Enables all logging
+  --log-enable RULE (notice+)           Enables logging for selected levels and
+                                        components. RULE is in the form 
+                                        'LEVEL[+][:PATTERN]' Levels are one of:
+                                         
+                                         trace debug info notice warning error 
+                                        critical
+                                        For example:
+                                        '--log-enable warning+' logs all 
+                                        warning, error and critical messages.
+                                        '--log-enable debug:framing' logs debug
+                                        messages from the framing namespace. 
+                                        This option can be used multiple times
+  --log-time yes|no (1)                 Include time in log messages
+  --log-level yes|no (1)                Include severity level in log messages
+  --log-source yes|no (0)               Include source file:line in log 
+                                        messages
+  --log-thread yes|no (0)               Include thread ID in log messages
+  --log-function yes|no (0)             Include function signature in log 
+                                        messages
+  --log-prefix STRING                   Prefix to append to all log messages
+
+Logging sink options:
+  --log-to-stderr yes|no (1)            Send logging output to stderr
+  --log-to-stdout yes|no (0)            Send logging output to stdout
+  --log-to-file FILE                    Send log output to FILE.
+  --log-to-syslog yes|no (0)            Send logging output to syslog;
+                                        customize using --syslog-name and 
+                                        --syslog-facility
+  --syslog-name NAME (qpidd)            Name to use in syslog messages
+  --syslog-facility LOG_XXX (LOG_DAEMON) 
+                                        Facility to use in syslog messages
+
+Daemon options:
+  -d [ --daemon ]                     Run as a daemon. Logs to syslog by 
+                                      default in this mode.
+  --transport TRANSPORT (tcp)         The transport for which to return the 
+                                      port
+  --pid-dir DIR (/home/enano/.qpidd)  Directory where port-specific PID file is
+                                      stored
+  -w [ --wait ] SECONDS (600)         Sets the maximum wait time to initialize 
+                                      the daemon. If the daemon fails to 
+                                      initialize, prints an error and returns 1
+  -c [ --check ]                      Prints the daemon's process ID to stdout 
+                                      and returns 0 if the daemon is running, 
+                                      otherwise returns 1
+  -q [ --quit ]                       Tells the daemon to shut down
+

masschroq/src/qpid/listener/compile.sh

+gcc -Wall -o masschroq_listener.o -c masschroq_listener.cpp;
+gcc -o m_listener -lqpidmessaging masschroq_listener.o

masschroq/src/qpid/listener/masschroq_listener.cpp

+#include <qpid/messaging/Connection.h>
+#include <qpid/messaging/Message.h>
+#include <qpid/messaging/Receiver.h>
+#include <qpid/messaging/Sender.h>
+#include <qpid/messaging/Session.h>
+
+#include <iostream>
+
+using namespace qpid::messaging;
+
+int main(int argc, char** argv) {
+    std::string broker = argc > 1 ? argv[1] : "localhost:5672";
+    std::string address = argc > 2 ? argv[2] : "amq.topic";
+    std::string connectionOptions = argc > 3 ? argv[3] : "";
+    
+    Connection connection(broker, connectionOptions);
+    try {
+        connection.open();
+        Session session = connection.createSession();
+
+        Receiver receiver = session.createReceiver(address);
+       
+	while (true) {
+	  Message message = receiver.fetch();
+	  std::cout << message.getContent() << std::endl;
+	  session.acknowledge();
+        }
+	
+        connection.close();
+        return 0;
+    } catch(const std::exception& error) {
+        std::cerr << error.what() << std::endl;
+        connection.close();
+        return 1;   
+    }
+}

masschroq/src/qpid/sender/compile.sh

+gcc -Wall -o masschroq_sender.o -c masschroq_sender.cpp;
+gcc -o m_sender -lqpidmessaging masschroq_sender.o

masschroq/src/qpid/sender/masschroq_sender.cpp

+#include <qpid/messaging/Address.h>
+#include <qpid/messaging/Connection.h>
+#include <qpid/messaging/Message.h>
+#include <qpid/messaging/Receiver.h>
+#include <qpid/messaging/Sender.h>
+#include <qpid/messaging/Session.h>
+
+#include <cstdlib>
+#include <iostream>
+
+#include <sstream>
+
+using namespace qpid::messaging;
+
+using std::stringstream;
+using std::string;
+
+int main(int argc, char** argv) {
+  std::string broker = argc > 1 ? argv[1] : "localhost:5672";
+  std::string address = argc > 2 ? argv[2] : "amq.topic";
+  std::string connectionOptions = argc > 3 ? argv[3] : "";
+    
+    Connection connection(broker, connectionOptions);
+     try {
+        connection.open();
+        Session session = connection.createSession();
+
+	Sender sender = session.createSender(address);
+	
+	Message message;
+	message.setContent
+	  (			    
+	   "<?xml version=\"1.0\" encoding=\"UTF-8\" standalone=\"no\"?>"
+	   "<masschroq>\n"
+	   "<rawdata>\n"
+	   "<data_file id=\"samp0\" format=\"mzxml\" path=\"Bsa_old.mzXML\" type=\"centroid\"/>\n"
+	   "<data_file id=\"samp1\" format=\"mzxml\" path=\"bsa_1.mzXML\" type=\"centroid\"/>\n"
+	   "</rawdata>\n"
+	   "<groups>\n"
+	   "<group data_ids=\"samp0 samp1\" id=\"G1\"/>\n"
+	   "</groups>\n"
+	   "<peptide_files_list>\n"
+	   "<peptide_file data=\"samp0\" path=\"/home/enano/Desktop/quantiTestsMin/scanTests/Bsa_old_peptide_list.txt\"/>\n"
+	   "<peptide_file data=\"samp1\" path=\"/home/enano/Desktop/quantiTestsMin/scanTests/bsa_1_peptide_list.txt\"/>\n"
+	   "</peptide_files_list>\n"
+	   "<alignments>\n"
+	   "<alignment_methods>\n"
+	   "<alignment_method id=\"ms2_1\">\n"
+	   "<ms2>\n"
+	   "<ms2_tendency_halfwindow>10</ms2_tendency_halfwindow>\n"
+	   "<ms2_smoothing_halfwindow>5</ms2_smoothing_halfwindow>\n"
+	   "<ms1_smoothing_halfwindow>0</ms1_smoothing_halfwindow>\n"
+	   "</ms2>\n"
+	   "</alignment_method>\n"
+	   "</alignment_methods>\n"
+	   "<align group_id=\"G1\" method_id=\"ms2_1\" reference_data_id=\"samp0\"/>\n"
+	   "</alignments>\n"
+	   "<quantification_methods>\n"
+	   "<quantification_method id=\"qzivy1\">\n"
+	   "<xic_extraction xic_type=\"sum\">\n"
+	   "<mz_range max=\"1.5\" min=\"0.5\"/>\n"
+	   "</xic_extraction>\n"
+	   "<xic_filters>\n"
+	   "<background half_mediane=\"5\" half_min_max=\"15\"/>\n"
+	   "</xic_filters>\n"
+	   "<peak_detection>\n"
+	   "<detection_zivy>\n"
+	   "<minmax_half_edge>3</minmax_half_edge>\n"
+	   "<maxmin_half_edge>2</maxmin_half_edge>\n"
+	   "<detection_threshold_on_max>5000</detection_threshold_on_max>\n"
+	   "<detection_threshold_on_min>3000</detection_threshold_on_min>\n"
+	   "</detection_zivy>\n"
+	   "</peak_detection>\n"
+	   "</quantification_method>\n"
+	   "</quantification_methods>\n"
+	   "<quantification>\n"
+	   "<quantification_results>\n"
+	   "<quantification_result output_file=\"peps_test_scan_align_no\" format=\"tsv\"/>\n"
+	   "</quantification_results>\n"
+	   "<quantification_traces>\n"
+	   "<all_xics_traces output_dir=\"peps_xics_traces\" format=\"tsv\"/>\n"
+	   "</quantification_traces>\n"
+	   "<quantify id=\"q1\" withingroup=\"G1\" quantification_method_id=\"qzivy1\">\n"
+	   "<peptides_in_peptide_list mode=\"real_or_mean\"/>\n"
+	   "</quantify>\n"
+	   "</quantification>\n"
+	   "</masschroq>\n"
+				    );
+	
+	sender.send(message);
+        connection.close();
+        return 0;
+     } catch(const std::exception& error) {
+       std::cout << error.what() << std::endl;
+       connection.close();
+     }
+     return 1;
+}
+
+