Commit d6326223 authored by Edlira Nano's avatar Edlira Nano
Browse files

preparing post matching release

git-svn-id: https://subversion.renater.fr/masschroq/trunk@2259 e4b6dbb4-9209-464b-83f7-6257456c460c
parent 4a87a00f
......@@ -24,7 +24,7 @@ SET (MASSCHROQ_LIB_NAME "masschroq")
SET (MASSCHROQ_LIB_VERSION "1.0.0")
SET (MASSCHROQ_LIB_SOVERSION "1")
SET (MASSCHROQ_SCHEMA_VERSION "1.1")
SET (MASSCHROQ_SCHEMA_VERSION "${MASSCHROQ_MAJOR_VERSION}.${MASSCHROQ_MINOR_VERSION}")
SET (MASSCHROQ_SCHEMA_FILE "masschroq-${MASSCHROQ_SCHEMA_VERSION}.xsd")
SET (MASSCHROQ_XSD_LOCATION_DIR "${masschroq_SOURCE_DIR}/doc/schema")
SET (masschroq_BINARY_DIR "bin")
......
......@@ -62,7 +62,7 @@
<quantification_methods>
<quantification_method id="my_qzivy">
<xic_extraction xic_type="sum">
<mz_range max="1.5" min="0.5"/>
<mz_range max="0.3" min="0.3"/>
</xic_extraction>
<xic_filters>
<anti_spike half="5"/>
......@@ -81,7 +81,7 @@
</quantification_method>
<quantification_method id="my_qmoulon">
<xic_extraction xic_type="max">
<ppm_range max="1.5" min="0.5"/>
<ppm_range max="10" min="10"/>
</xic_extraction>
<xic_filters>
<background half_mediane="5" half_min_max="15"/>
......@@ -100,7 +100,7 @@
<quantification_result output_file="result1" format ="tsv"/>
<quantification_result output_file="result2" format="gnumeric"/>
<quantification_result output_file="result3" format ="xhtmltable"/>
<quantification_result output_file="result4" format ="xml" xic_traces="true"/>
<quantification_result output_file="result4" format ="masschroqml" xic_traces="true"/>
</quantification_results>
<quantification_traces>
<peptide_traces peptide_ids="pep0 pep1" output_dir="pep_traces" format="tsv"/>
......@@ -117,7 +117,7 @@
<peptides_in_peptide_list mode="real_or_mean"/>
</quantify>
<quantify id="q2" withingroup="G2" quantification_method_id="my_moulon">
<peptides_in_peptide_list mode="real_or_mean" isotope_label_refs="iso1 iso2"/>
<peptides_in_peptide_list mode="post_matching" isotope_label_refs="iso1 iso2"/>
<mz_list>732.317 449.754 552.234 464.251 381.577 569.771 575.256</mz_list>
<mzrt_list>
<mzrt mz="732.317" rt="230.712"/>
......
This diff is collapsed.
......@@ -16,21 +16,21 @@
urlcolor=blue
}
\newcommand{\M}{MassChroQ}
\newcommand{\Mv}{MassChroQ v.1.1}
\newcommand{\Mv}{MassChroQ v.1.2}
\newcommand{\mexe}{\texttt{masschroq.exe}}
\newcommand{\sitemasschroq}{http://pappso.inra.fr/bioinfo/masschroq/}
\newcommand{\sitepappso}{http://pappso.inra.fr/}
\begin{document}
\title{\color{blue}\parbox[t]{\textwidth}{\centering MassChroQ
version 1.1 Readme file}}
version 1.2 Readme file}}
\date{}
\maketitle
Congratulations! MassChroQ version 1.1 is now installed on your Windows
Congratulations! MassChroQ version 1.2 is now installed on your Windows
system.
Your MassChroQ's installation directory contains:
Your MassChroQ installation directory contains:
\begin{itemize}
\item the \emph{manual}, explaining MassChroQ features and use.
......@@ -102,8 +102,4 @@ subversion repository from \url{https://subversion.cru.fr/masschroq/}.
Feel free and very welcomed to contribute to the {\M} project by
directly contacting one of its authors.
\end{document}
\end{document}
\ No newline at end of file
Markdown is supported
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment