Commit 7485fee0 authored by Edlira Nano's avatar Edlira Nano
Browse files

removed unnecessary optional attributes in masschroqML schema and example

git-svn-id: https://subversion.renater.fr/masschroq/trunk@2066 e4b6dbb4-9209-464b-83f7-6257456c460c
parent 031f747a
masschroq (1.0.0-1) maverick; urgency=low
[ Olivier Langella ]
[ Edlira Nano <enano@moulon.inra.fr>]
* first stable masschroq release including all improvements made by Edlira Nano.
-- Olivier Langella <olivier.langella@moulon.inra.fr> Mon, 14 Feb 2011 17:27:14 +0100
* first stable masschroq release including all improvements made by Edlira Nano:
- implementation of bestRt method for peptide rt
- implementation of MS/MS alignment method
- added mzML format parser
- added MS level > 2 parsing
- implemented the parsing of peptide csv files
- quantification results changes:
- added list of results (MonitorList)
- added masschroqML xml result type
- changed floats to doubles everywhere
- written manual
[ enano ]
*
-- enano <enano@moulonadm-desktop> Tue, 12 Apr 2011 12:29:23 +0200
quantimscpp (0.0.6-1) jaunty; urgency=low
......@@ -66,4 +80,4 @@ quantimscpp (0.0.1-1) intrepid; urgency=low
* Initial release.
-- Olivier Langella <Olivier.Langella@moulon.inra.fr> Fri, 23 Jan 2009 11:18:51 +0200
\ No newline at end of file
......@@ -1390,13 +1390,6 @@
</xs:documentation>
</xs:annotation>
</xs:attribute>
<xs:attribute name="sequence" type="xs:string">
<xs:annotation>
<xs:documentation>
If this item is a peptide, the amino-acid sequence of this peptide.
</xs:documentation>
</xs:annotation>
</xs:attribute>
<xs:attribute name="z" type="xs:integer">
<xs:annotation>
<xs:documentation>
......@@ -1404,14 +1397,6 @@
</xs:documentation>
</xs:annotation>
</xs:attribute>
<xs:attribute name="mods" type="xs:string">
<xs:annotation>
<xs:documentation>
If this item is a peptide, the mods optional free string indicating
modification on this peptide sequence if any.
</xs:documentation>
</xs:annotation>
</xs:attribute>
</xs:complexType>
<xs:complexType name="summaryType">
......
......@@ -342,7 +342,7 @@ MasschroqWriter::setSelectedPeaks(const std::vector<xicPeak *> * p_v_peak_list)
mcq_double currentMz = _current_lookfor->get_mz();
const Peptide * current_peptide(_current_lookfor->getPeptide());
QString pepId, pepSequence, isotopeLabel, pepMods;
QString pepId, isotopeLabel;
unsigned int currentZ;
mcq_double rt, max_intensity, area, rt_begin, rt_end;
......@@ -365,10 +365,7 @@ MasschroqWriter::setSelectedPeaks(const std::vector<xicPeak *> * p_v_peak_list)
if (current_peptide != 0) {
pepId = current_peptide->getXmlId();
pepSequence = current_peptide->getSequence();
pepMods = current_peptide->getMods();
_output_stream->writeAttribute("peptide", pepId);
_output_stream->writeAttribute("sequence", pepSequence);
if (current_peptide->getIsotopeLabel() != 0) {
isotopeLabel = current_peptide->getIsotopeLabel()->getXmlId();
......@@ -377,9 +374,6 @@ MasschroqWriter::setSelectedPeaks(const std::vector<xicPeak *> * p_v_peak_list)
currentZ = *_current_lookfor->getZ();
_output_stream->writeAttribute("z", currentZ);
if (!pepMods.isEmpty()) {
_output_stream->writeAttribute("mods", pepMods);
}
}
_output_stream->writeEndElement(); // "</quantification_data>"
}
......
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