From f0b558f8ce8b0f31216e68827d6c50303bee5c63 Mon Sep 17 00:00:00 2001
From: langella <langella@b8ef2a07-7df7-436f-90b9-41648038564b>
Date: Mon, 22 Apr 2013 07:58:02 +0000
Subject: [PATCH] get_samples replaced by getMsRunSet
git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@363 b8ef2a07-7df7-436f-90b9-41648038564b
---
.../pappso/xtandempipeline/sax_parse/ProticDbMlWriter.java | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/xtandempipeline/src/fr/inra/pappso/xtandempipeline/sax_parse/ProticDbMlWriter.java b/xtandempipeline/src/fr/inra/pappso/xtandempipeline/sax_parse/ProticDbMlWriter.java
index edbc0a692..72db150ca 100644
--- a/xtandempipeline/src/fr/inra/pappso/xtandempipeline/sax_parse/ProticDbMlWriter.java
+++ b/xtandempipeline/src/fr/inra/pappso/xtandempipeline/sax_parse/ProticDbMlWriter.java
@@ -183,7 +183,7 @@ public class ProticDbMlWriter {
writer.writeStartElement("samples");
for (Identification ident : arrayIdentifications) {
- for (MsRun samp : ident.get_samples()) {
+ for (MsRun samp : ident.getMsRunSet()) {
writer.writeStartElement("sample");
String id_samp = "samp" + sample_to_id.size();
String id_msrun = "msr" + msrun_to_id.size();
@@ -216,7 +216,7 @@ public class ProticDbMlWriter {
writer.writeStartElement("msRuns");
for (Identification ident : arrayIdentifications) {
- for (MsRun samp : ident.get_samples()) {
+ for (MsRun samp : ident.getMsRunSet()) {
String name = samp.getSampleName();
name = name.replaceAll(".xml", "");
--
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