diff --git a/xtandempipeline/src/fr/inra/pappso/xtandempipeline/sax_parse/ProticDbMlWriter.java b/xtandempipeline/src/fr/inra/pappso/xtandempipeline/sax_parse/ProticDbMlWriter.java index edbc0a692bb0acd9772c7e01ac66da467a00f37b..72db150ca05517e94c1216618c687dd8423e0686 100644 --- a/xtandempipeline/src/fr/inra/pappso/xtandempipeline/sax_parse/ProticDbMlWriter.java +++ b/xtandempipeline/src/fr/inra/pappso/xtandempipeline/sax_parse/ProticDbMlWriter.java @@ -183,7 +183,7 @@ public class ProticDbMlWriter { writer.writeStartElement("samples"); for (Identification ident : arrayIdentifications) { - for (MsRun samp : ident.get_samples()) { + for (MsRun samp : ident.getMsRunSet()) { writer.writeStartElement("sample"); String id_samp = "samp" + sample_to_id.size(); String id_msrun = "msr" + msrun_to_id.size(); @@ -216,7 +216,7 @@ public class ProticDbMlWriter { writer.writeStartElement("msRuns"); for (Identification ident : arrayIdentifications) { - for (MsRun samp : ident.get_samples()) { + for (MsRun samp : ident.getMsRunSet()) { String name = samp.getSampleName(); name = name.replaceAll(".xml", "");