From e4b79ddc64860639736316737d85571420401ec1 Mon Sep 17 00:00:00 2001
From: Olivier Langella <Olivier.Langella@moulon.inra.fr>
Date: Thu, 8 Jun 2017 21:37:23 +0200
Subject: [PATCH] write only grouped peptides
---
src/grouping/groupinggroup.h | 1 +
src/output/proticdbml.cpp | 2 +-
2 files changed, 2 insertions(+), 1 deletion(-)
diff --git a/src/grouping/groupinggroup.h b/src/grouping/groupinggroup.h
index 3c6f4ce33..d351b1878 100644
--- a/src/grouping/groupinggroup.h
+++ b/src/grouping/groupinggroup.h
@@ -74,6 +74,7 @@ public:
/** @brief get the list of peptide match included in this group
* warning : it only contains the first protein representant in one subgroup
+ * use a double loop with getProteinMatchList to scan every peptide match
* */
std::vector<const PeptideMatch *> getPeptideMatchList() const;
diff --git a/src/output/proticdbml.cpp b/src/output/proticdbml.cpp
index bfd1d7b0a..b72b08ab0 100644
--- a/src/output/proticdbml.cpp
+++ b/src/output/proticdbml.cpp
@@ -437,7 +437,7 @@ void ProticdbMl::writepeptideHitsbyGroup(GroupingGroup * p_group) {
std::vector <ProticPeptideHit> protic_peptide_hit_list;
for (const ProteinMatch* p_protein_match : p_group->getProteinMatchList()) {
- for (const PeptideMatch* p_peptide_match : p_protein_match->getPeptideMatchList()) {
+ for (const PeptideMatch* p_peptide_match : p_protein_match->getPeptideMatchList(ValidationState::grouped)) {
ProticPeptideHit protic_peptide_hit = {getProticPeptideHitKey(p_peptide_match), p_peptide_match};
protic_peptide_hit_list.push_back(protic_peptide_hit);
}
--
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