From da90ec2ce2f2e4d5d2ab35df6dca150baf7efeaa Mon Sep 17 00:00:00 2001
From: Olivier Langella <olivier.langella@u-psud.fr>
Date: Fri, 24 Nov 2017 23:43:26 +0100
Subject: [PATCH] identification data source params written in xpip file
---
.../identificationdatasource.cpp | 9 ++++++++
.../identificationdatasource.h | 10 ++++++++
src/output/xpip.cpp | 23 +++++++++++++++++++
3 files changed, 42 insertions(+)
diff --git a/src/core/identification_sources/identificationdatasource.cpp b/src/core/identification_sources/identificationdatasource.cpp
index 7899da8e9..f3312f069 100644
--- a/src/core/identification_sources/identificationdatasource.cpp
+++ b/src/core/identification_sources/identificationdatasource.cpp
@@ -43,6 +43,15 @@ IdentificationDataSource::~IdentificationDataSource()
{
}
+
+const std::map<IdentificationEngineStatistics, QVariant> & IdentificationDataSource::getIdentificationEngineStatisticsMap() const {
+ return _param_stats;
+}
+
+const std::map<IdentificationEngineParam, QVariant> & IdentificationDataSource::getIdentificationEngineParamMap() const {
+ return _params;
+}
+
const PeptideEvidenceStore & IdentificationDataSource::getPeptideEvidenceStore() const {
return _peptide_evidence_store;
}
diff --git a/src/core/identification_sources/identificationdatasource.h b/src/core/identification_sources/identificationdatasource.h
index 01a8d2202..52bf3cf03 100644
--- a/src/core/identification_sources/identificationdatasource.h
+++ b/src/core/identification_sources/identificationdatasource.h
@@ -114,6 +114,16 @@ public:
void addFastaFile (FastaFileSp file);
const std::vector<FastaFileSp> & getFastaFileList() const;
+
+
+ /** \brief get identification engine statistics map
+ */
+ virtual const std::map<IdentificationEngineStatistics, QVariant> & getIdentificationEngineStatisticsMap() const;
+
+ /** \brief get identification engine param map
+ */
+ virtual const std::map<IdentificationEngineParam, QVariant> & getIdentificationEngineParamMap() const;
+
protected :
QString _resource_name;
diff --git a/src/output/xpip.cpp b/src/output/xpip.cpp
index ba1f7ce39..5b48a4b26 100644
--- a/src/output/xpip.cpp
+++ b/src/output/xpip.cpp
@@ -194,6 +194,29 @@ void Xpip::writeIdentificationDataSourceList(const IdentificationDataSourceStore
_output_stream->writeAttribute("engine",QString("%1").arg(static_cast<std::int8_t>(ident_source_sp.get()->getIdentificationEngine())));
_output_stream->writeAttribute("version",ident_source_sp.get()->getIdentificationEngineVersion());
+ const std::map<IdentificationEngineParam, QVariant> params = ident_source_sp.get()->getIdentificationEngineParamMap();
+ if (params.size() > 0) {
+ _output_stream->writeStartElement("params");
+ for (const std::pair<IdentificationEngineParam, QVariant> stat_pair: params) {
+ _output_stream->writeStartElement("param");
+ _output_stream->writeAttribute("key",QString("%1").arg(static_cast<std::int8_t>(stat_pair.first)));
+ _output_stream->writeAttribute("value",stat_pair.second.toString());
+ _output_stream->writeEndElement();
+ }
+ _output_stream->writeEndElement();
+ }
+
+ const std::map<IdentificationEngineStatistics, QVariant> stats = ident_source_sp.get()->getIdentificationEngineStatisticsMap();
+ if (stats.size() > 0) {
+ _output_stream->writeStartElement("stats");
+ for (const std::pair<IdentificationEngineStatistics, QVariant> stat_pair: stats) {
+ _output_stream->writeStartElement("stat");
+ _output_stream->writeAttribute("key",QString("%1").arg(static_cast<std::int8_t>(stat_pair.first)));
+ _output_stream->writeAttribute("value",stat_pair.second.toString());
+ _output_stream->writeEndElement();
+ }
+ _output_stream->writeEndElement();
+ }
_output_stream->writeEndElement();
}
_output_stream->writeEndElement();
--
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