From 932fea601c0cd892f2fc645c873e0e0cfff626be Mon Sep 17 00:00:00 2001
From: Olivier Langella <Olivier.Langella@moulon.inra.fr>
Date: Sat, 29 Apr 2017 08:22:35 +0200
Subject: [PATCH] new ODS spreadsheet do export spectra
---
src/CMakeLists.txt | 1 +
.../export_spreadsheet_dialog/export_spreadsheet_dialog.ui | 7 +++++++
.../export_spreadsheet_dialog/exportspreadsheetdialog.cpp | 4 ++++
src/output/ods/odsexport.cpp | 4 ++++
4 files changed, 16 insertions(+)
diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
index 8fc3029d8..c08b83a5b 100644
--- a/src/CMakeLists.txt
+++ b/src/CMakeLists.txt
@@ -74,6 +74,7 @@ SET(CPP_FILES
output/ods/peptidesheet.cpp
output/ods/proteinsheet.cpp
output/ods/simplesheet.cpp
+ output/ods/spectrasheet.cpp
utils/fastafilestore.cpp
utils/identificationdatasourcestore.cpp
utils/groupstore.cpp
diff --git a/src/gui/export_spreadsheet_dialog/export_spreadsheet_dialog.ui b/src/gui/export_spreadsheet_dialog/export_spreadsheet_dialog.ui
index 6b586c8e7..cb9dbb9f8 100644
--- a/src/gui/export_spreadsheet_dialog/export_spreadsheet_dialog.ui
+++ b/src/gui/export_spreadsheet_dialog/export_spreadsheet_dialog.ui
@@ -41,6 +41,13 @@
</property>
</widget>
</item>
+ <item>
+ <widget class="QCheckBox" name="spectra_checkbox">
+ <property name="text">
+ <string>spectra : list all peptide spectrum match for each sequenceLI+mass </string>
+ </property>
+ </widget>
+ </item>
</layout>
</widget>
</item>
diff --git a/src/gui/export_spreadsheet_dialog/exportspreadsheetdialog.cpp b/src/gui/export_spreadsheet_dialog/exportspreadsheetdialog.cpp
index f4ab2ee9e..7fdd01b8b 100644
--- a/src/gui/export_spreadsheet_dialog/exportspreadsheetdialog.cpp
+++ b/src/gui/export_spreadsheet_dialog/exportspreadsheetdialog.cpp
@@ -49,6 +49,10 @@ ExportSpreadsheetDialog::ExportSpreadsheetDialog(QWidget * parent):
if (settings.value("export_ods/peptides", "true").toBool()) {
ui->peptide_checkbox->setCheckState(Qt::Checked);
}
+ ui->spectra_checkbox->setCheckState(Qt::Unchecked);
+ if (settings.value("export_ods/spectra", "true").toBool()) {
+ ui->spectra_checkbox->setCheckState(Qt::Checked);
+ }
//param.setFilterCrossSamplePeptideNumber(settings.value("automatic_filter/cross_sample", "true").toBool());
#if QT_VERSION >= 0x050000
diff --git a/src/output/ods/odsexport.cpp b/src/output/ods/odsexport.cpp
index 7ced6728c..b77b165c1 100644
--- a/src/output/ods/odsexport.cpp
+++ b/src/output/ods/odsexport.cpp
@@ -31,6 +31,7 @@
#include "simplesheet.h"
#include "proteinsheet.h"
#include "peptidesheet.h"
+#include "spectrasheet.h"
#include <QSettings>
OdsExport::OdsExport(const Project * project):_p_project(project) {
@@ -64,4 +65,7 @@ void OdsExport::write(CalcWriterInterface * p_writer) {
if (settings.value("export_ods/peptides", "true").toBool()) {
PeptideSheet(this, p_writer, _p_project);
}
+ if (settings.value("export_ods/spectra", "true").toBool()) {
+ SpectraSheet(this, p_writer, _p_project);
+ }
}
--
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