From 867dfd2cd5fdcf25918f70d65da644cd6967a37e Mon Sep 17 00:00:00 2001
From: langella <langella@b8ef2a07-7df7-436f-90b9-41648038564b>
Date: Wed, 23 May 2012 11:39:38 +0000
Subject: [PATCH] OutputStreamWriter added... my fault
git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@276 b8ef2a07-7df7-436f-90b9-41648038564b
---
.../sax_parse/MassChroQmlOutput.java | 27 +++++++++++++------
1 file changed, 19 insertions(+), 8 deletions(-)
diff --git a/xtandempipeline/src/fr/inra/pappso/xtandempipeline/sax_parse/MassChroQmlOutput.java b/xtandempipeline/src/fr/inra/pappso/xtandempipeline/sax_parse/MassChroQmlOutput.java
index 0d17f06eb..ccaae2d2f 100644
--- a/xtandempipeline/src/fr/inra/pappso/xtandempipeline/sax_parse/MassChroQmlOutput.java
+++ b/xtandempipeline/src/fr/inra/pappso/xtandempipeline/sax_parse/MassChroQmlOutput.java
@@ -25,6 +25,8 @@ package fr.inra.pappso.xtandempipeline.sax_parse;
import java.io.IOException;
import java.io.OutputStream;
+import java.io.OutputStreamWriter;
+
import javax.xml.stream.XMLOutputFactory;
import javax.xml.stream.XMLStreamWriter;
@@ -35,12 +37,14 @@ import fr.inra.pappso.xtandempipeline.class_msms.Identification;
import fr.inra.pappso.xtandempipeline.class_msms.ModifsList;
public class MassChroQmlOutput {
- private static final Logger logger = Logger.getLogger(MassChroQmlOutput.class);
+ private static final Logger logger = Logger
+ .getLogger(MassChroQmlOutput.class);
ModifsList isotopic_mods;
Identification ident;
- public MassChroQmlOutput(ModifsList isotopic_mods, Identification ident) throws ProticPortException {
+ public MassChroQmlOutput(ModifsList isotopic_mods, Identification ident)
+ throws ProticPortException {
this.isotopic_mods = isotopic_mods;
this.ident = ident;
@@ -49,13 +53,19 @@ public class MassChroQmlOutput {
public void write(OutputStream outputStream) {
try {
XMLOutputFactory factory = XMLOutputFactory.newInstance();
- //OutputStreamWriter noIndentOutput = new OutputStreamWriter(
- // outputStream, "UTF8");
- //XMLStreamWriter writer = factory.createXMLStreamWriter(noIndentOutput);
- XMLStreamWriter writer = new IndentingXMLStreamWriter(factory.createXMLStreamWriter(outputStream));
+ // OutputStreamWriter noIndentOutput = new OutputStreamWriter(
+ // outputStream, "UTF8");
+ // XMLStreamWriter writer =
+ // factory.createXMLStreamWriter(noIndentOutput);
+ OutputStreamWriter output = new OutputStreamWriter(outputStream,
+ "UTF8");
+
+ XMLStreamWriter writer = new IndentingXMLStreamWriter(
+ factory.createXMLStreamWriter(output));
writer.writeStartDocument("UTF-8", "1.0");
- MassChroQmlWriter masschroq_ml_writer = new MassChroQmlWriter(writer);
+ MassChroQmlWriter masschroq_ml_writer = new MassChroQmlWriter(
+ writer);
masschroq_ml_writer.write(this.isotopic_mods, this.ident);
writer.writeEndDocument();
@@ -70,7 +80,8 @@ public class MassChroQmlOutput {
} catch (IOException e1) {
logger.debug("ERROR : " + e.getMessage(), e);
}
- // throw new ProticPortException ("ERROR writing mzXml "+ e.getMessage());
+ // throw new ProticPortException ("ERROR writing mzXml "+
+ // e.getMessage());
logger.debug("ERROR writing MassChroQml : " + e.getMessage(), e);
}
}
--
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