From 7dabcd4a20c6ca3602b61179db4b4f6c0604f256 Mon Sep 17 00:00:00 2001
From: Olivier Langella <Olivier.Langella@moulon.inra.fr>
Date: Fri, 7 Apr 2017 21:58:21 +0200
Subject: [PATCH] sequence Li count
---
src/core/proteinmatch.cpp | 4 ++--
src/core/proteinmatch.h | 2 +-
src/grouping/groupinggroup.cpp | 6 +++---
src/gui/protein_list_view/proteintablemodel.cpp | 2 +-
4 files changed, 7 insertions(+), 7 deletions(-)
diff --git a/src/core/proteinmatch.cpp b/src/core/proteinmatch.cpp
index 339b3a6cb..af186f98c 100644
--- a/src/core/proteinmatch.cpp
+++ b/src/core/proteinmatch.cpp
@@ -187,11 +187,11 @@ unsigned int ProteinMatch::countPeptideMatch(ValidationState state) const {
});
}
-size_t ProteinMatch::countUniqueSequence(ValidationState state)const {
+size_t ProteinMatch::countUniqueSequenceLi(ValidationState state)const {
std::set<QString> sequence_list;
for (auto & p_peptide_match : _peptide_match_list) {
if (p_peptide_match->getValidationState() >= state) {
- sequence_list.insert(p_peptide_match->getPeptideXtpSp().get()->getSequence());
+ sequence_list.insert(p_peptide_match->getPeptideXtpSp().get()->getSequenceLi());
}
}
return sequence_list.size();
diff --git a/src/core/proteinmatch.h b/src/core/proteinmatch.h
index 76c495033..a2039e62b 100644
--- a/src/core/proteinmatch.h
+++ b/src/core/proteinmatch.h
@@ -80,7 +80,7 @@ public:
/** @brief count unique identified sequences (from valid and cheked spectrums)
* */
- size_t countUniqueSequence(ValidationState state)const;
+ size_t countUniqueSequenceLi(ValidationState state)const;
const pappso::GrpProteinSp & getGrpProteinSp() const;
diff --git a/src/grouping/groupinggroup.cpp b/src/grouping/groupinggroup.cpp
index b27c25706..f5da520f6 100644
--- a/src/grouping/groupinggroup.cpp
+++ b/src/grouping/groupinggroup.cpp
@@ -111,19 +111,19 @@ std::size_t GroupingGroup::countSpecificSpectrum(const ProteinMatch * p_protein_
std::size_t GroupingGroup::countSpecificSequence(const ProteinMatch * p_protein_match) const {
if (_number_of_subgroup == 1) {
- return p_protein_match->countUniqueSequence(ValidationState::validAndChecked);
+ return p_protein_match->countUniqueSequenceLi(ValidationState::validAndChecked);
}
std::set<QString> sequence_list_in;
for (auto && p_peptide_match :p_protein_match->getPeptideMatchList()) {
if (p_peptide_match->isValidAndChecked()) {
- sequence_list_in.insert(p_peptide_match->getPeptideXtpSp().get()->getSequence());
+ sequence_list_in.insert(p_peptide_match->getPeptideXtpSp().get()->getSequenceLi());
}
}
std::set<QString> sequence_list_out;
unsigned int sg_number = p_protein_match->getGrpProteinSp().get()->getSubGroupNumber();
for (auto && pair_peptide_match :_pair_sg_number_peptide_match_list) {
if (pair_peptide_match.first != sg_number) {
- sequence_list_out.insert(pair_peptide_match.second->getPeptideXtpSp().get()->getSequence());
+ sequence_list_out.insert(pair_peptide_match.second->getPeptideXtpSp().get()->getSequenceLi());
}
}
diff --git a/src/gui/protein_list_view/proteintablemodel.cpp b/src/gui/protein_list_view/proteintablemodel.cpp
index 904fa910d..9302b550e 100644
--- a/src/gui/protein_list_view/proteintablemodel.cpp
+++ b/src/gui/protein_list_view/proteintablemodel.cpp
@@ -181,7 +181,7 @@ QVariant ProteinTableModel::data(const QModelIndex &index, int role ) const {
}
if (_column_assignment[col] == (std::int8_t) ProteinListColumn::sequence ) {
- return QVariant ((qreal) _p_identification_group->getProteinMatchList().at(row)->countUniqueSequence(ValidationState::validAndChecked));
+ return QVariant ((qreal) _p_identification_group->getProteinMatchList().at(row)->countUniqueSequenceLi(ValidationState::validAndChecked));
}
if (_column_assignment[col] == (std::int8_t) ProteinListColumn::specific_sequence ) {
GroupingGroup * p_groupin_group = _p_identification_group->getProteinMatchList().at(row)->getGroupingGroupSp().get();
--
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