From 3255bdf048762e31dbb492b24dd5e4d93c6ecb6c Mon Sep 17 00:00:00 2001
From: Olivier Langella <Olivier.Langella@moulon.inra.fr>
Date: Wed, 26 Jul 2017 08:43:25 +0200
Subject: [PATCH] more ptm peptide columns
---
src/grouping/ptm/ptmsamplescan.cpp | 12 ++++++++++++
src/grouping/ptm/ptmsamplescan.h | 1 +
.../ptm_peptide_list_view/ptmpeptidetablemodel.cpp | 14 ++++++++++++++
3 files changed, 27 insertions(+)
diff --git a/src/grouping/ptm/ptmsamplescan.cpp b/src/grouping/ptm/ptmsamplescan.cpp
index f3db43d1d..195649f2e 100644
--- a/src/grouping/ptm/ptmsamplescan.cpp
+++ b/src/grouping/ptm/ptmsamplescan.cpp
@@ -52,5 +52,17 @@ bool PtmSampleScan::add(const PeptideMatch * p_peptide_match) {
return false;
}
_peptide_match_list.push_back(p_peptide_match);
+
+ //sort list
+ std::sort(_peptide_match_list.begin(),_peptide_match_list.end(),[](const PeptideMatch * first, const PeptideMatch * second) {
+ return (first->getEvalue() < second->getEvalue()) ;
+ });
+
return true;
}
+
+ std::vector<unsigned int> PtmSampleScan::getBestPtmPositionList() const {
+ std::vector<unsigned int> list;
+
+ return list;
+ }
diff --git a/src/grouping/ptm/ptmsamplescan.h b/src/grouping/ptm/ptmsamplescan.h
index f0446c3cc..b03cd0177 100644
--- a/src/grouping/ptm/ptmsamplescan.h
+++ b/src/grouping/ptm/ptmsamplescan.h
@@ -49,6 +49,7 @@ public:
const PeptideMatch * getRepresentativePeptideMatch() const;
bool add(const PeptideMatch * p_peptide_match);
+ std::vector<unsigned int> getBestPtmPositionList() const;
private:
std::vector<const PeptideMatch *> _peptide_match_list;
diff --git a/src/gui/ptm_peptide_list_view/ptmpeptidetablemodel.cpp b/src/gui/ptm_peptide_list_view/ptmpeptidetablemodel.cpp
index 0501d7dfd..225405c54 100644
--- a/src/gui/ptm_peptide_list_view/ptmpeptidetablemodel.cpp
+++ b/src/gui/ptm_peptide_list_view/ptmpeptidetablemodel.cpp
@@ -88,6 +88,10 @@ const QString PtmPeptideTableModel::getTitle(std::int8_t column) {
break;
case (std::int8_t) PtmPeptideListColumn::besthyperscore:
return "top hyperscore";
+ case (std::int8_t) PtmPeptideListColumn::bestposition:
+ return "top PTM positions";
+ case (std::int8_t) PtmPeptideListColumn::allobservedposition:
+ return "observed PTM positions";
}
return "";
@@ -134,6 +138,10 @@ const QString PtmPeptideTableModel::getDescription(std::int8_t column) {
break;
case (std::int8_t) PtmPeptideListColumn::besthyperscore:
return "best X!Tandem hyperscore";
+ case (std::int8_t) PtmPeptideListColumn::bestposition:
+ return "PTM positions of the top identified peptide (best Evalue) for this scan";
+ case (std::int8_t) PtmPeptideListColumn::allobservedposition:
+ return "all observed PTM positions for the same scan";
}
return "";
@@ -212,6 +220,12 @@ QVariant PtmPeptideTableModel::data(const QModelIndex &index, int role ) const {
case (std::int8_t)PtmPeptideListColumn::besthyperscore:
return _ptm_sample_scan_list.at(row).get()->getRepresentativePeptideMatch()->getParam(PeptideMatchParam::tandem_hyperscore);
break;
+ case (std::int8_t)PtmPeptideListColumn::bestposition:
+ //return _ptm_sample_scan_list.at(row).get()->getBestPtmPositionList();
+ break;
+ case (std::int8_t)PtmPeptideListColumn::allobservedposition:
+ //return _ptm_sample_scan_list.at(row).get()->getObservedPtmPositionList();
+ break;
}
}
--
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