From 2b860768f9387c35053f4809140f1b5213271f11 Mon Sep 17 00:00:00 2001
From: Olivier Langella <olivier.langella@u-psud.fr>
Date: Mon, 29 Oct 2018 22:25:53 +0100
Subject: [PATCH] count peptide directly without protein validity
---
src/core/identificationgroup.cpp | 19 +++++++++----------
1 file changed, 9 insertions(+), 10 deletions(-)
diff --git a/src/core/identificationgroup.cpp b/src/core/identificationgroup.cpp
index 5063f0bfb..3b9029ed4 100644
--- a/src/core/identificationgroup.cpp
+++ b/src/core/identificationgroup.cpp
@@ -152,10 +152,10 @@ IdentificationGroup::countPeptideEvidence(ValidationState state) const
std::set<const PeptideEvidence *> peptide_evidence_set;
for(auto &p_protein_match : _protein_match_list)
{
- if(p_protein_match->getValidationState() >= state)
- {
- p_protein_match->collectPeptideEvidences(peptide_evidence_set, state);
- }
+ // if(p_protein_match->getValidationState() >= state)
+ // {
+ p_protein_match->collectPeptideEvidences(peptide_evidence_set, state);
+ // }
}
return peptide_evidence_set.size();
}
@@ -166,14 +166,13 @@ IdentificationGroup::countDecoyPeptideEvidence(ValidationState state) const
std::set<const PeptideEvidence *> peptide_evidence_set;
for(auto &p_protein_match : _protein_match_list)
{
- if(p_protein_match->getValidationState() >= state)
+ // if(p_protein_match->getValidationState() >= state)
+ // {
+ if(p_protein_match->getProteinXtpSp().get()->isDecoy())
{
- if(p_protein_match->getProteinXtpSp().get()->isDecoy())
- {
- p_protein_match->collectPeptideEvidences(peptide_evidence_set,
- state);
- }
+ p_protein_match->collectPeptideEvidences(peptide_evidence_set, state);
}
+ // }
}
return peptide_evidence_set.size();
}
--
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