text-mining-workflow merge requestshttps://forgemia.inra.fr/omnicrobe/text-mining-workflow/-/merge_requests2021-11-30T16:07:09+01:00https://forgemia.inra.fr/omnicrobe/text-mining-workflow/-/merge_requests/42From ld2021-11-30T16:07:09+01:00Mouhamadou BaFrom ldhttps://forgemia.inra.fr/omnicrobe/text-mining-workflow/-/merge_requests/41From rb2021-11-30T16:06:57+01:00Mouhamadou BaFrom rbhttps://forgemia.inra.fr/omnicrobe/text-mining-workflow/-/merge_requests/20Draft: Resolve "MAJ données CIRM avec taxo et onto d'avant mars 2021"2021-11-30T14:03:34+01:00Mouhamadou BaDraft: Resolve "MAJ données CIRM avec taxo et onto d'avant mars 2021"Closes #37Closes #37Mouhamadou BaMouhamadou Bahttps://forgemia.inra.fr/omnicrobe/text-mining-workflow/-/merge_requests/19Draft: Resolve "update the stats"2021-11-30T14:03:21+01:00Mouhamadou BaDraft: Resolve "update the stats"Closes #36Closes #36Mouhamadou BaMouhamadou Bahttps://forgemia.inra.fr/omnicrobe/text-mining-workflow/-/merge_requests/5Draft: Resolve "CI : deploiement du workflow"2021-11-30T14:03:09+01:00Mouhamadou BaDraft: Resolve "CI : deploiement du workflow"Closes #20Closes #20https://forgemia.inra.fr/omnicrobe/text-mining-workflow/-/merge_requests/2Draft: Config profile cluster2021-11-30T14:02:55+01:00Mouhamadou BaDraft: Config profile clusterAdd a sge cluster profile for Migale that can be used to run the workflowAdd a sge cluster profile for Migale that can be used to run the workflowMouhamadou BaMouhamadou Bahttps://forgemia.inra.fr/omnicrobe/text-mining-workflow/-/merge_requests/22Draft: Resolve "update ncbi supertaxo"2021-08-12T11:20:20+02:00Mouhamadou BaDraft: Resolve "update ncbi supertaxo"Closes #41Closes #41Mouhamadou BaMouhamadou Bahttps://forgemia.inra.fr/omnicrobe/text-mining-workflow/-/merge_requests/10Draft: Resolve "gerer la rule create_dummy_bionlp_st_dir"2021-05-06T14:56:55+02:00Mouhamadou BaDraft: Resolve "gerer la rule create_dummy_bionlp_st_dir"Closes #25Closes #25Mouhamadou BaMouhamadou Bahttps://forgemia.inra.fr/omnicrobe/text-mining-workflow/-/merge_requests/4Resolve "Mise à jour ontobiope"2021-01-13T13:32:20+01:00Mouhamadou BaResolve "Mise à jour ontobiope"Closes #19Closes #19Valentin Louxvalentin.loux@inra.frValentin Louxvalentin.loux@inra.frhttps://forgemia.inra.fr/omnicrobe/text-mining-workflow/-/merge_requests/3Draft: Resolve "CI pipeline : run the full workflow on the migale worker"2020-12-01T16:18:34+01:00Mouhamadou BaDraft: Resolve "CI pipeline : run the full workflow on the migale worker"Closes #17Closes #17https://forgemia.inra.fr/omnicrobe/text-mining-workflow/-/merge_requests/1Draft: Add rules test2020-12-01T14:12:14+01:00Mouhamadou BaDraft: Add rules testEnrich the Entities plan with rulesEnrich the Entities plan with ruleshttps://forgemia.inra.fr/omnicrobe/text-mining-workflow/-/merge_requests/71Resolve "Refactor alvis plans"2023-08-10T09:27:48+02:00Louise DelegerResolve "Refactor alvis plans"Closes #125Closes #125Robert BossyRobert Bossyhttps://forgemia.inra.fr/omnicrobe/text-mining-workflow/-/merge_requests/70Taxa fixes2023-10-09T10:00:42+02:00Robert BossyTaxa fixesFixes for: #77 #85 #86 #110 #127Fixes for: #77 #85 #86 #110 #127https://forgemia.inra.fr/omnicrobe/text-mining-workflow/-/merge_requests/69Resolve "mettre à jour les données des cirms"2023-03-31T13:12:27+02:00Mouhamadou BaResolve "mettre à jour les données des cirms"Closes #123Closes #123https://forgemia.inra.fr/omnicrobe/text-mining-workflow/-/merge_requests/68Resolve "present BB eval results into an hmtl page"2023-03-31T15:44:50+02:00Mouhamadou BaResolve "present BB eval results into an hmtl page"Closes #122Closes #122https://forgemia.inra.fr/omnicrobe/text-mining-workflow/-/merge_requests/67Resolve "passage à la derniére version d'alvisnlp"2023-03-28T19:02:08+02:00Robert BossyResolve "passage à la derniére version d'alvisnlp"Closes #120Closes #120Robert BossyRobert Bossyhttps://forgemia.inra.fr/omnicrobe/text-mining-workflow/-/merge_requests/66Dev2022-12-07T11:40:09+01:00Mouhamadou BaDevhttps://forgemia.inra.fr/omnicrobe/text-mining-workflow/-/merge_requests/65Dev2022-12-06T15:22:57+01:00Mouhamadou BaDevhttps://forgemia.inra.fr/omnicrobe/text-mining-workflow/-/merge_requests/64Resolve "Meilleure désambiguïsation des abbréviations des taxons"2023-10-06T15:07:23+02:00Robert BossyResolve "Meilleure désambiguïsation des abbréviations des taxons"Closes #110Closes #110Robert BossyRobert Bossyhttps://forgemia.inra.fr/omnicrobe/text-mining-workflow/-/merge_requests/63Resolve "Remove duplicates from `bacdive-format-results.py` output"2022-10-26T11:23:11+02:00Robert BossyResolve "Remove duplicates from `bacdive-format-results.py` output"Closes #93Closes #93Robert BossyRobert Bossy