From fd3aed6eb51c4e8c070d1c1cf16db85a4a12c933 Mon Sep 17 00:00:00 2001
From: Robert Bossy <Robert.Bossy@inra.fr>
Date: Thu, 13 Jul 2023 11:23:42 +0200
Subject: [PATCH] fixed indentation
---
resources/saturate.yaml | 76 ++++++++++++++++++++---------------------
1 file changed, 38 insertions(+), 38 deletions(-)
diff --git a/resources/saturate.yaml b/resources/saturate.yaml
index cca283f..51755f6 100644
--- a/resources/saturate.yaml
+++ b/resources/saturate.yaml
@@ -1,10 +1,10 @@
- name_type: genre name abbreviation
pattern: (?!Phage|Bacteriophage)([A-Z])[a-z]+ ((?!group|phage|bacteriophage)[a-z]+)
replacements:
- - '{1}. {2}'
- - '{1} {2}'
- - '{1}.{2}'
- - '{1} . {2}'
+ - '{1}. {2}'
+ - '{1} {2}'
+ - '{1}.{2}'
+ - '{1} . {2}'
- name_type: specific name case
pattern: ([A-Z][a-z]+) ([a-z])([a-z]+)
replacements:
@@ -12,69 +12,69 @@
- name_type: dash-space replacement
pattern: ([^-]*)-(.*)
replacements:
- - '{1} {2}'
+ - '{1} {2}'
- name_type: author name variation
pattern: (.*) [(]?([A-Z]\w+), (\d{4})[)]?
replacements:
- - '{1} {2}'
- - '{1} ({2})'
+ - '{1} {2}'
+ - '{1} ({2})'
- name_type: common name plural and case
name_type_restriction:
- - common name
+ - common name
pattern: ([A-Z])([a-z]*[ao])
replacements:
- - '{1!l}{2}'
- - '{1!l}{2}s'
- - '{1}{2}s'
+ - '{1!l}{2}'
+ - '{1!l}{2}s'
+ - '{1}{2}s'
- name_type: common name singular and case
name_type_restriction:
- - common name
+ - common name
pattern: ([A-Z])([a-z]*)s
replacements:
- - '{1}{2}'
- - '{1!l}{2}'
- - '{1!l}{2}s'
+ - '{1}{2}'
+ - '{1!l}{2}'
+ - '{1!l}{2}s'
- name_type: join strain number
pattern: ([A-Z]+) (\d+)
replacements:
- - '{1}{2}'
- - '{1}-{2}'
+ - '{1}{2}'
+ - '{1}-{2}'
- name_type: join strain number
pattern: ([A-Z]+)-(\d+)
replacements:
- - '{1}{2}'
- - '{1} {2}'
+ - '{1}{2}'
+ - '{1} {2}'
- name_type: join strain number
pattern: ([A-Z]+)(\d+)
replacements:
- - '{1}-{2}'
- - '{1} {2}'
+ - '{1}-{2}'
+ - '{1} {2}'
- name_type: pathovar expansion
pattern: ([A-Z][a-z]+ [a-z]+) pv. ([a-z]+)
replacements:
- - '{1} pathovar {2}'
+ - '{1} pathovar {2}'
- name_type: pathovar expansion and genre name abbreviation
pattern: ([A-Z])[a-z]+ ([a-z]+) pv. ([a-z]+)
replacements:
- - '{1}. {2} pathovar {3}'
- - '{1} {2} pathovar {3}'
- - '{1}.{2} pathovar {3}'
- - '{1} . {2} pathovar {3}'
+ - '{1}. {2} pathovar {3}'
+ - '{1} {2} pathovar {3}'
+ - '{1}.{2} pathovar {3}'
+ - '{1} . {2} pathovar {3}'
- name_type: genre name abbreviation and join strain number
pattern: ([A-Z])[a-z]+ ([a-z]+) ([A-Z]+)[ -]?(\d+)
replacements:
- - '{1}. {2} {3}{4}'
- - '{1} {2} {3}{4}'
- - '{1}.{2} {3}{4}'
- - '{1} . {2} {3}{4}'
- - '{1}. {2} {3}-{4}'
- - '{1} {2} {3}-{4}'
- - '{1}.{2} {3}-{4}'
- - '{1} . {2} {3}-{4}'
- - '{1}. {2} {3} {4}'
- - '{1} {2} {3} {4}'
- - '{1}.{2} {3} {4}'
- - '{1} . {2} {3} {4}'
+ - '{1}. {2} {3}{4}'
+ - '{1} {2} {3}{4}'
+ - '{1}.{2} {3}{4}'
+ - '{1} . {2} {3}{4}'
+ - '{1}. {2} {3}-{4}'
+ - '{1} {2} {3}-{4}'
+ - '{1}.{2} {3}-{4}'
+ - '{1} . {2} {3}-{4}'
+ - '{1}. {2} {3} {4}'
+ - '{1} {2} {3} {4}'
+ - '{1}.{2} {3} {4}'
+ - '{1} . {2} {3} {4}'
- name_type: infuenza virus case
pattern: Influenza A virus
replacements:
--
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