diff --git a/rewrite-taxonomy.snakefile b/rewrite-taxonomy.snakefile index ab0b78defff19118f7a0bfe5a2ef952264f2b360..753c6d124ee6bc74b2b7e0b28ba367e32734a35c 100644 --- a/rewrite-taxonomy.snakefile +++ b/rewrite-taxonomy.snakefile @@ -3,7 +3,6 @@ configfile: 'config.yaml' rule all: input: - config['OUTDIR'] + '/finish.txt', config['OUTDIR'] + '/taxid_microorganisms.txt', config['OUTDIR'] + '/taxa+id_microorganisms.txt', config['OUTDIR'] + '/taxa+id_microorganisms.trie', @@ -13,7 +12,7 @@ rule all: config['OUTDIR'] + '/microorganisms-roots-paths.txt' -rule check: +rule compile: input: config['OUTDIR'] + '/taxa+id_{root}.txt'