From 952de0caf430c6451b3432362f8a5657dacad085 Mon Sep 17 00:00:00 2001
From: Mouhamadou Ba <mandiayba@gmail.com>
Date: Mon, 27 Mar 2023 22:22:31 +0200
Subject: [PATCH] Update .gitlab-ci.yml file
---
.gitlab-ci.yml | 4 +++-
1 file changed, 3 insertions(+), 1 deletion(-)
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index a7ad6de..421c09a 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -41,7 +41,9 @@ pages: # This job runs in the build stage, which runs first.
#- mkdir output
#- cp -r /work_projet/omnicrobe_data/tm_workflow/extended-microorganisms-taxonomy/output/taxid_header_microorganisms.txt output/
- mkdir public
- - mv output supertaxo
+ - mkdir supertaxo
+ - cp -r {bacdive-match,bacdive-strains,bacdive-match/bacdive-to-taxid.txt,ncbi-taxonomy/names.dmp,taxa+id_full.trie,taxa+id_full.txt,taxa+id_microorganisms.txt,taxid_full.txt,taxid_microorganisms.txt} supertaxo/
+ #- mv output supertaxo
- cp -r html/* public/
- zip -r supertaxo.zip supertaxo/*
- mv supertaxo.zip public/
--
GitLab