From 70ba0d73af330c8548d2d491e17ff5b512921ab5 Mon Sep 17 00:00:00 2001
From: Robert Bossy <Robert.Bossy@inra.fr>
Date: Mon, 28 Mar 2022 13:52:07 +0200
Subject: [PATCH] fixed taxon selection
---
select-taxa.plan | 2 +-
test.plan | 9 +++++++--
2 files changed, 8 insertions(+), 3 deletions(-)
diff --git a/select-taxa.plan b/select-taxa.plan
index 3e054bc..2c0cc74 100644
--- a/select-taxa.plan
+++ b/select-taxa.plan
@@ -21,7 +21,7 @@
</taxids>
<layer class="Action">
- <target>documents.sections.layer:taxa[@select-taxa]</target>
+ <target>documents.sections.layer:taxa[@selected-taxa]</target>
<action>
setlayer:add(corpus.@select-taxa-name)
| set:feat(corpus.@select-taxa-name, corpus.@select-taxa-name)
diff --git a/test.plan b/test.plan
index 3605013..978cdfb 100644
--- a/test.plan
+++ b/test.plan
@@ -1,6 +1,6 @@
<alvisnlp-plan id="test">
<read class="TextFileReader">
- <sourcePath recursive="true">BioNLP-ST-2016_BB-cat+ner/BB-cat+ner-8347510.txt</sourcePath>
+ <sourcePath recursive="true">BioNLP-ST-2016_BB-cat+ner</sourcePath>
<baseNameId/>
</read>
@@ -8,4 +8,9 @@
<taxaDict>output/taxa+id_full.txt</taxaDict>
<compiledDict>output/taxa+id_full.trie</compiledDict>
</ner-taxa>
-</alvisnlp-plan>
\ No newline at end of file
+
+ <select-microorganisms href="select-taxa.plan">
+ <list>output/taxid_microorganisms.txt</list>
+ <name>microorganisms</name>
+ </select-microorganisms>
+</alvisnlp-plan>
--
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