Commit 8f1ea0b6 authored by Olivier Rue's avatar Olivier Rue
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metabarfood advances

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UBOCC_A_110190 NR_077149.1 100.000 240 0 0 17 256 1 240 3.16e-125 444 256 NR_077149.1 Bacteria;Bacteroidetes;Cytophagia;Cytophagales;Bernardetiaceae;Hugenholtzia;Hugenholtzia roseola
UBOCC_A_108070 NR_077196.1 99.170 241 2 0 22 262 2 242 1.95e-122 435 262 NR_077196.1 Eukaryota;Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Aspergillus;Aspergillus elegans
F1M3 NR_152286.1 100.000 230 0 0 1 230 55 284 1.02e-119 425 230 NR_152286.1 Eukaryota;Ascomycota;Dothideomycetes;Cladosporiales;Cladosporiaceae;Cladosporium;Cladosporium angustiherbarum
F5M9 NR_152307.1 100.000 231 0 0 1 231 55 285 2.86e-120 427 231 NR_152307.1 Eukaryota;Ascomycota;Dothideomycetes;Cladosporiales;Cladosporiaceae;Cladosporium;Cladosporium chasmanthicola
CBS193_54 NR_156279.1 96.610 236 4 2 1 236 94 325 1.38e-108 388 236 NR_156279.1 Eukaryota;Ascomycota;Dothideomycetes;Cladosporiales;Cladosporiaceae;Cladosporium;Cladosporium cycadicola
UBOCC_A_108076 NR_163674.1 100.000 218 0 0 1 218 96 313 4.52e-113 403 218 NR_163674.1 Eukaryota;Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Aspergillus;Aspergillus heterocaryoticus
CBS2532 NR_154490.1 88.479 217 11 8 17 229 1 207 6.59e-67 250 229 NR_154490.1 Eukaryota;Basidiomycota;Tremellomycetes;Cystofilobasidiales;Mrakiaceae;Tausonia;Tausonia pamirica
UBOCC_A_110244 NR_138362.1 100.000 260 0 0 1 260 41 300 2.45e-136 481 260 NR_138362.1 Eukaryota;Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Aspergillus;Aspergillus oerlinghausenensis
CBS324_89 NR_163549.1 99.598 249 0 1 4 252 1 248 5.16e-128 453 252 NR_163549.1 Eukaryota;Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium;Penicillium neoechinulatum
D5M1 NR_165994.1 100.000 248 0 0 1 248 55 302 1.09e-129 459 248 NR_165994.1 Eukaryota;Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium;Penicillium bialowiezense
UBOCC_A_110202 NR_165994.1 98.394 249 3 1 1 249 55 302 5.13e-123 436 249 NR_165994.1 Eukaryota;Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium;Penicillium bialowiezense
F2M9 NR_153252.1 95.181 249 9 3 1 246 43 291 4.00e-109 390 246 NR_153252.1 Eukaryota;Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium;Penicillium citreosulfuratum
F7M11 NR_138261.1 99.203 251 2 0 1 251 9 259 5.14e-128 453 251 NR_138261.1 Eukaryota;Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium;Penicillium molle
UBOCC_A_108098 NR_163669.1 100.000 251 0 0 1 251 63 313 2.37e-131 464 251 NR_163669.1 Eukaryota;Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium;Penicillium fuscoglaucum
UBOCC_A_110170 NR_163669.1 99.602 251 1 0 1 251 63 313 1.10e-129 459 251 NR_163669.1 Eukaryota;Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium;Penicillium fuscoglaucum
CBS173_87 NR_153267.1 99.200 250 2 0 1 250 81 330 1.84e-127 451 250 NR_153267.1 Eukaryota;Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium;Penicillium fimorum
UBOCC_A_108102 NR_153267.1 98.000 250 5 0 1 250 81 330 1.85e-122 435 250 NR_153267.1 Eukaryota;Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium;Penicillium fimorum
CBS332_48 NR_138261.1 99.602 251 1 0 1 251 9 259 1.10e-129 459 251 NR_138261.1 Eukaryota;Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium;Penicillium molle
UBOCC_A_101464 NR_171619.1 100.000 251 0 0 1 251 78 328 2.37e-131 464 251 NR_171619.1 Eukaryota;Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium;Penicillium hordei
CBS232_60 NR_163546.1 100.000 245 0 0 4 248 1 245 5.07e-128 453 248 NR_163546.1 Eukaryota;Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium;Penicillium olsonii
CBS107_11 NR_163669.1 100.000 251 0 0 1 251 63 313 2.37e-131 464 251 NR_163669.1 Eukaryota;Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium;Penicillium fuscoglaucum
CBS135391 NR_156542.1 100.000 248 0 0 1 248 2 249 1.09e-129 459 248 NR_156542.1 Eukaryota;Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium;Penicillium salamii
CBS603_74 NR_171619.1 99.602 251 1 0 1 251 78 328 1.10e-129 459 251 NR_171619.1 Eukaryota;Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium;Penicillium hordei
CBS390_48 NR_163549.1 100.000 248 0 0 4 251 1 248 1.10e-129 459 251 NR_163549.1 Eukaryota;Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium;Penicillium neoechinulatum
CBS316 NR_073296.1 100.000 212 0 0 17 228 1 212 1.03e-109 392 228 NR_073296.1 Eukaryota;Basidiomycota;Microbotryomycetes;Sporidiobolales;Sporidiobolaceae;Rhodotorula;Rhodotorula mucilaginosa
CBS940 NR_154829.1 100.000 254 0 0 8 261 1 254 5.33e-133 470 261 NR_154829.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Unassigned;[Candida] saitoana
CBS10151 NR_151793.1 100.000 129 0 0 4 132 1 129 7.61e-64 239 132 NR_151793.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Dipodascaceae;Yarrowia;Yarrowia alimentaria
CBS12934 NR_155999.1 100.000 119 0 0 15 133 1 119 2.78e-58 220 133 NR_155999.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Dipodascaceae;Yarrowia;Yarrowia bubula
CLIB183 NR_111212.1 100.000 97 0 0 39 135 1 97 4.80e-46 180 135 NR_111212.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Dipodascaceae;Yarrowia;Yarrowia lipolytica
CBS12935 NR_164526.1 100.000 100 0 0 36 135 1 100 1.03e-47 185 135 NR_164526.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Dipodascaceae;Yarrowia;Yarrowia porcina
CBS1913 NR_077069.1 100.000 267 0 0 45 311 1 267 3.82e-140 494 311 NR_077069.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Yamadazyma;[Candida] aaseri
CBS2868 NR_130681.1 100.000 188 0 0 30 217 1 188 2.14e-96 348 217 NR_130681.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Unassigned;Starmerella;Starmerella apicola
CLIB1764 NR_164574.1 100.000 267 0 0 1 267 1 267 3.24e-140 494 267 NR_164574.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kazachstania;Kazachstania saulgeensis
CBS380 NR_165984.1 100.000 448 0 0 1 448 1 448 0.0 828 448 NR_165984.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces;Saccharomyces bayanus
CBS1538 NR_165984.1 100.000 409 0 0 1 409 40 448 0.0 756 409 NR_165984.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces;Saccharomyces bayanus
CBS395 NR_165984.1 99.554 448 2 0 30 477 1 448 0.0 817 477 NR_165984.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces;Saccharomyces bayanus
CBS4074 NR_119732.1 100.000 167 0 0 26 192 1 167 8.81e-85 309 192 NR_119732.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Saturnispora;Saturnispora diversa
CBS354 NR_121199.1 100.000 304 0 0 1 304 33 336 1.01e-160 562 304 NR_121199.1 Eukaryota;Ascomycota;Schizosaccharomycetes;Schizosaccharomycetales;Schizosaccharomycetaceae;Schizosaccharomyces;Schizosaccharomyces japonicus
CBS5256 NR_149348.1 99.590 244 1 0 1 244 55 298 8.39e-126 446 244 NR_149348.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Meyerozyma;Meyerozyma caribbica
MTF3942 NR_138220.1 98.639 147 2 0 1 147 92 238 1.84e-70 261 147 NR_138220.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Hyphopichia;Hyphopichia pseudoburtonii
CBS5648 NR_155227.1 100.000 293 0 0 1 293 55 347 1.26e-154 542 293 NR_155227.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kazachstania;Kazachstania barnettii
B24_3_CLIB1990 NR_111256.1 93.585 265 11 6 39 298 1 264 4.93e-109 390 298 NR_111256.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kazachstania;Kazachstania exigua
CBS8638 NR_138198.1 100.000 258 0 0 47 304 1 258 3.76e-135 477 304 NR_138198.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kazachstania;Kazachstania bulderi
CBS379 NR_111256.1 100.000 264 0 0 39 302 1 264 1.72e-138 488 302 NR_111256.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kazachstania;Kazachstania exigua
CBS5658 NR_137720.1 80.478 251 25 14 27 254 1 250 5.87e-43 171 254 NR_137720.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kazachstania;Kazachstania pseudohumilis
CBS4311 NR_138193.1 100.000 287 0 0 47 333 1 287 3.13e-151 531 333 NR_138193.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kazachstania;Kazachstania servazzii
CBS6564 NR_153282.1 91.000 100 3 2 1 100 55 148 7.02e-31 130 184 NR_153282.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia;[Candida] rugopelliculosa
UBOCC_A_108096 NR_163669.1 100.000 251 0 0 1 251 63 313 2.37e-131 464 251 NR_163669.1 Eukaryota;Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium;Penicillium fuscoglaucum
UBOCC_A_101430 NR_138261.1 100.000 251 0 0 1 251 9 259 2.37e-131 464 251 NR_138261.1 Eukaryota;Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium;Penicillium molle
CBS288_36 NR_158822.1 99.149 235 0 2 16 248 1 235 1.43e-118 422 248 NR_158822.1 Eukaryota;Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium;Penicillium cataractarum
CBS121719_UBOCC_A_110191 NR_121481.1 100.000 260 0 0 1 260 55 314 2.45e-136 481 260 NR_121481.1 Eukaryota;Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Aspergillus;Aspergillus fumigatus
CBS1600 NR_111211.1 100.000 179 0 0 39 217 1 179 2.15e-91 331 217 NR_111211.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Phaffomycetaceae;Cyberlindnera;Cyberlindnera jadinii
CBS615_84 NR_154202.1 79.221 154 20 10 1 142 55 208 5.28e-21 97.1 142 NR_154202.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Unassigned;Myxozyma;Myxozyma geophila
UBOCC_A_101328 NR_111413.1 98.480 329 2 2 17 345 1 326 4.12e-165 577 345 NR_111413.1 Eukaryota;Mucoromycota;Mucoromycetes;Mucorales;Lichtheimiaceae;Lichtheimia;Lichtheimia corymbifera
CBS195_68_UBOCC_A_108085 NR_126116.1 100.000 268 0 0 17 284 1 268 9.63e-141 496 284 NR_126116.1 Eukaryota;Mucoromycota;Mucoromycetes;Mucorales;Mucoraceae;Mucor;Mucor circinelloides
CBS254_48_UBOCC_A_108087 NR_152956.1 98.326 239 3 1 47 284 1 239 2.15e-117 418 284 NR_152956.1 Eukaryota;Mucoromycota;Mucoromycetes;Mucorales;Mucoraceae;Mucor;Mucor lanceolatus
CBS131276_UBOCC_A_109153 NR_152956.1 100.000 239 0 0 47 285 1 239 1.28e-124 442 285 NR_152956.1 Eukaryota;Mucoromycota;Mucoromycetes;Mucorales;Mucoraceae;Mucor;Mucor lanceolatus
CBS260_68_UBOCC_A_108090 NR_126135.1 100.000 245 0 0 40 284 1 245 5.88e-128 453 284 NR_126135.1 Eukaryota;Mucoromycota;Mucoromycetes;Mucorales;Mucoraceae;Mucor;Mucor racemosus
Ei7 NR_138358.1 98.795 249 2 1 1 249 37 284 1.10e-124 442 249 NR_138358.1 Eukaryota;Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium;Penicillium murcianum
CBS47884_UBOCC_A_101397 NR_138261.1 99.225 258 2 0 1 258 2 259 6.80e-132 466 258 NR_138261.1 Eukaryota;Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium;Penicillium molle
CBS221_30_UBOCC_A_108110_110188 NR_103621.1 100.000 253 0 0 17 269 1 253 1.98e-132 468 269 NR_103621.1 Eukaryota;Ascomycota;Eurotiomycetes;Eurotiales;Aspergillaceae;Penicillium;Penicillium roqueforti
CBS2479 NR_111353.1 100.000 185 0 0 15 199 1 185 9.04e-95 342 199 NR_111353.1 Eukaryota;Basidiomycota;Tremellomycetes;Trichosporonales;Trichosporonaceae;Trichosporon;Trichosporon insectorum
CBS2071 NR_161005.1 100.000 139 0 0 1 139 55 193 2.23e-69 257 139 NR_161005.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Dipodascaceae;Yarrowia;Yarrowia deformans
CBS619 NR_163770.1 94.815 270 8 6 1 268 55 320 7.24e-117 416 268 NR_163770.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Kurtzmaniella;[Candida] anglica
CBS6826 NR_164371.1 99.375 160 1 0 21 180 1 160 2.97e-79 291 180 NR_164371.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Trichomonascaceae;Wickerhamiella;Wickerhamiella azyma
CBS10907 NR_165186.1 100.000 232 0 0 1 232 9 240 8.00e-121 429 232 NR_165186.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Candida;Candida metapsilosis
CBS639 NR_111250.1 100.000 68 0 0 3 70 30 97 2.79e-30 126 70 NR_111250.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Candida;Candida tropicalis
CBS10083 NR_130682.1 100.000 181 0 0 17 197 1 181 1.50e-92 335 197 NR_130682.1 Eukaryota;Basidiomycota;Tremellomycetes;Tremellales;Cryptococcaceae;Cryptococcus;Cryptococcus neoformans
CBS5706 NR_149346.1 97.653 213 4 1 1 213 55 266 2.08e-101 364 213 NR_149346.1 Eukaryota;Basidiomycota;Cystobasidiomycetes;Cystobasidiales;Cystobasidiaceae;Cystobasidium;Cystobasidium minutum
CBS74 NR_165974.1 100.000 163 0 0 5 167 1 163 1.26e-82 302 167 NR_165974.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Brettanomyces;Brettanomyces bruxellensis
CBS613 NR_111249.1 100.000 123 0 0 39 161 1 123 2.08e-60 228 161 NR_111249.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Unassigned;Diutina;Diutina rugosa
CBS2592 NR_138189.1 98.452 323 0 2 36 354 1 322 3.30e-161 564 354 NR_138189.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycodaceae;Hanseniaspora;Hanseniaspora occidentalis
CBS8733 NR_137535.1 100.000 351 0 0 1 351 1 351 0.0 649 351 NR_137535.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycodaceae;Hanseniaspora;Hanseniaspora opuntiae
CBS2352 NR_111253.1 100.000 116 0 0 39 154 1 116 1.54e-56 215 154 NR_111253.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Hyphopichia;Hyphopichia burtonii
CBS9966 NR_149348.1 100.000 244 0 0 1 244 55 298 1.80e-127 451 244 NR_149348.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Meyerozyma;Meyerozyma caribbica
CBS5270 NR_155359.1 99.550 222 0 1 17 238 1 221 4.98e-113 403 238 NR_155359.1 Eukaryota;Basidiomycota;Tremellomycetes;Cystofilobasidiales;Mrakiaceae;Mrakia;Mrakia nivalis
CBS942 NR_130696.1 100.000 169 0 0 17 185 1 169 6.53e-86 313 185 NR_130696.1 Eukaryota;Basidiomycota;Tremellomycetes;Tremellales;Rhynchogastremataceae;Papiliotrema;Papiliotrema flavescens
CBS10810 NR_130696.1 98.225 169 3 0 17 185 1 169 6.58e-81 296 185 NR_130696.1 Eukaryota;Basidiomycota;Tremellomycetes;Tremellales;Rhynchogastremataceae;Papiliotrema;Papiliotrema flavescens
CBS8166 NR_073292.1 100.000 207 0 0 17 223 1 207 6.04e-107 383 223 NR_073292.1 Eukaryota;Basidiomycota;Microbotryomycetes;Unassigned;Unassigned;Curvibasidium;[Rhodotorula] nothofagi
CBS2011 NR_111017.1 99.187 246 2 0 31 276 1 246 3.43e-125 444 276 NR_111017.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Schwanniomyces;Schwanniomyces etchellsii
CBS9494 NR_111250.1 100.000 70 0 0 1 70 98 167 2.16e-31 130 70 NR_111250.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Candida;Candida tropicalis
CBS7899 NR_073317.1 100.000 204 0 0 17 220 1 204 2.77e-105 377 220 NR_073317.1 Eukaryota;Basidiomycota;Cystobasidiomycetes;Unassigned;Symmetrosporaceae;Symmetrospora;Symmetrospora coprosmae
CBS4077 NR_154535.1 100.000 203 0 0 1 203 55 257 9.11e-105 375 203 NR_154535.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Trigonopsidaceae;Trigonopsis;Trigonopsis vinaria
CBS138 NR_130691.1 100.000 310 0 0 169 478 1 310 7.53e-164 573 478 NR_130691.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Nakaseomyces;[Candida] glabrata
CBS398 NR_138187.1 100.000 267 0 0 67 333 1 267 4.11e-140 494 333 NR_138187.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kazachstania;Kazachstania unispora
CBS712 NR_166044.1 94.771 306 12 4 1 305 55 357 4.88e-134 473 305 NR_166044.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces;Kluyveromyces lactis
CBS2605 NR_111593.1 100.000 236 0 0 14 249 1 236 5.13e-123 436 249 NR_111593.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Lodderomyces;Lodderomyces elongisporus
CBS2030 NR_149348.1 98.770 244 3 0 1 244 55 298 3.22e-122 435 418 NR_149348.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Meyerozyma;Meyerozyma caribbica
CBS2030 NR_149348.1 100.000 46 0 0 265 310 55 100 3.74e-17 86.1 418 NR_149348.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Meyerozyma;Meyerozyma caribbica
CBS185 NR_111254.1 100.000 285 0 0 39 323 1 285 3.92e-150 527 323 NR_111254.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Millerozyma;Millerozyma farinosa
CBS187 NR_130688.1 100.000 154 0 0 1 154 55 208 1.15e-77 285 154 NR_130688.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia;Pichia fermentans
CBS5147 NR_164078.1 96.471 170 3 3 10 178 1 168 2.28e-75 278 178 NR_164078.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia;Pichia cecembensis
MTF3605 NR_153281.1 85.629 167 13 9 1 163 101 260 1.68e-41 165 163 NR_153281.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia;[Candida] pseudolambica
CBS17 NR_073296.1 100.000 212 0 0 17 228 1 212 1.03e-109 392 228 NR_073296.1 Eukaryota;Basidiomycota;Microbotryomycetes;Sporidiobolales;Sporidiobolaceae;Rhodotorula;Rhodotorula mucilaginosa
CBS767 NR_130692.1 100.000 274 0 0 1 274 9 282 4.28e-144 507 274 NR_130692.1 Bacteria;Proteobacteria;Gammaproteobacteria;Enterobacterales;Hafniaceae;Edwardsiella;Edwardsiella tarda
UBOCC_A_101091 NR_156246.1 99.219 256 1 1 1 256 55 309 3.14e-130 460 256 NR_156246.1 Eukaryota;Ascomycota;Dothideomycetes;Dothideales;Saccotheciaceae;Aureobasidium;Aureobasidium leucospermi
CBS572_MOCKFILE NR_155007.1 96.599 147 4 1 1 147 55 200 6.68e-65 243 147 NR_155007.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Metschnikowiaceae;Clavispora;[Candida] pseudointermedia
CBS6936 NR_130677.1 100.000 105 0 0 39 143 1 105 1.84e-50 195 143 NR_130677.1 UnassignedUnassignedUnassignedUnassignedUnassignedUnassignedUnassigned
CBS732 NR_165940.1 100.000 301 0 0 1 301 55 355 4.64e-159 556 301 NR_165940.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Zygosaccharomyces;Zygosaccharomyces rouxii
CBS1171 NR_111007.1 98.246 399 0 3 46 443 1 393 0.0 691 443 NR_111007.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Saccharomyces;Saccharomyces cerevisiae
CBS5759 NR_111210.1 100.000 208 0 0 52 259 1 208 1.97e-107 385 259 NR_111210.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Phaffomycetaceae;Wickerhamomyces;Wickerhamomyces anomalus
CBS5578 NR_121464.1 97.600 125 3 0 44 168 171 295 2.14e-56 215 206 NR_121464.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Kodamaea;Kodamaea ohmeri
CBS252 NR_138212.1 100.000 198 0 0 40 237 1 198 6.51e-102 366 237 NR_138212.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Phaffomycetaceae;Barnettozyma;Barnettozyma californica
CBS4515 NR_111300.1 99.609 256 1 0 10 265 1 256 1.95e-132 468 265 NR_111300.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Kurtzmaniella;[Candida] santamariae
CBS1707 NR_165971.1 99.209 253 1 1 1 253 55 306 1.44e-128 455 253 NR_165971.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Phaffomycetaceae;Cyberlindnera;Cyberlindnera saturnus
CBS565 NR_077200.1 100.000 148 0 0 1 148 11 158 2.39e-74 274 148 NR_077200.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Unassigned;Diutina;Diutina catenulata
CBS179_30 NR_152485.1 100.000 53 0 0 1 53 26 78 1.60e-21 99.0 153 NR_152485.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Phaffomycetaceae;Cyberlindnera;Cyberlindnera maclurae
CBS479 NR_111113.1 100.000 347 0 0 36 382 1 347 0.0 641 382 NR_111113.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycodaceae;Hanseniaspora;Hanseniaspora valbyensis
CBS2104 NR_138156.1 100.000 259 0 0 47 305 1 259 1.05e-135 479 305 NR_138156.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces;Kluyveromyces dobzhanskii
CBS683 NR_166044.1 100.000 303 0 0 1 303 55 357 3.61e-160 560 303 NR_166044.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Kluyveromyces;Kluyveromyces lactis
CBS2287 NR_111196.1 100.000 171 0 0 27 197 1 171 5.42e-87 316 197 NR_111196.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Kregervanrija;Kregervanrija fluxuum
CBS707 NR_165978.1 96.503 286 9 1 4 289 1 285 1.65e-133 472 289 NR_165978.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Lachancea;Lachancea cidri
CBS6430 NR_155331.1 96.309 298 8 2 1 297 99 394 6.09e-138 486 297 NR_155331.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Lachancea;Lachancea nothofagi
CBS5106 NR_111047.1 97.778 225 5 0 17 241 1 225 1.41e-108 388 241 NR_111047.1 Eukaryota;Basidiomycota;Tremellomycetes;Filobasidiales;Filobasidiaceae;Naganishia;Naganishia friedmannii
CBS4140 NR_165955.1 100.000 261 0 0 15 275 1 261 7.24e-137 483 275 NR_165955.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Nakazawaea;Nakazawaea ernobii
CBS6085 NR_073271.1 100.000 219 0 0 17 235 1 219 1.37e-113 405 235 NR_073271.1 Eukaryota;Basidiomycota;Microbotryomycetes;Sporidiobolales;Sporidiobolaceae;Rhodotorula;Rhodotorula diobovata
CBS52 NR_155822.1 100.000 214 0 0 1 214 1 214 7.42e-111 396 214 NR_155822.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Unassigned;Starmerella;Starmerella lactis-condensi
CBS94 NR_111250.1 100.000 179 0 0 36 214 1 179 2.12e-91 331 214 NR_111250.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Candida;Candida tropicalis
CBS3082 NR_138159.1 100.000 257 0 0 46 302 1 257 1.34e-134 475 302 NR_138159.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Lachancea;Lachancea kluyveri
CBS157 NR_155771.1 100.000 132 0 0 66 197 1 132 2.59e-65 244 197 NR_155771.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Unassigned;Starmerella;Starmerella stellata
CBS159 NR_151807.1 100.000 161 0 0 6 166 1 161 1.62e-81 298 166 NR_151807.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Teunomyces;[Candida] sake
CBS20 NR_073294.1 99.526 211 1 0 17 227 1 211 1.71e-107 385 227 NR_073294.1 Eukaryota;Basidiomycota;Microbotryomycetes;Sporidiobolales;Sporidiobolaceae;Rhodotorula;Rhodotorula glutinis
CBS486 NR_155845.1 100.000 220 0 0 8 227 1 220 3.66e-114 407 227 NR_155845.1 Eukaryota;Basidiomycota;Microbotryomycetes;Sporidiobolales;Sporidiobolaceae;Sporobolomyces;Sporobolomyces roseus
CBS2764 NR_111633.1 99.658 292 1 0 47 338 1 292 2.46e-152 534 338 NR_111633.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Citeromyces;Citeromyces matritensis
CBS319 NR_149346.1 100.000 212 0 0 1 212 55 266 9.50e-110 392 212 NR_149346.1 Eukaryota;Basidiomycota;Cystobasidiomycetes;Cystobasidiales;Cystobasidiaceae;Cystobasidium;Cystobasidium minutum
CBS140 NR_130655.1 100.000 197 0 0 17 213 1 197 2.08e-101 364 213 NR_130655.1 Eukaryota;Basidiomycota;Tremellomycetes;Filobasidiales;Filobasidiaceae;Filobasidium;Filobasidium magnum
CBS465 NR_155181.1 97.796 363 7 1 4 366 1 362 1.55e-179 625 366 NR_155181.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycodaceae;Hanseniaspora;Hanseniaspora pseudoguilliermondii
CBS313 NR_138191.1 99.693 326 0 1 36 361 1 325 1.19e-170 595 361 NR_138191.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycodaceae;Hanseniaspora;Hanseniaspora osmophila
CBS314 NR_155181.1 98.619 362 4 1 4 364 1 362 0.0 640 364 NR_155181.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycodaceae;Hanseniaspora;Hanseniaspora pseudoguilliermondii
CBS2171 NR_165975.1 100.000 331 0 0 9 339 1 331 1.11e-175 612 339 NR_165975.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycodaceae;Hanseniaspora;Hanseniaspora vineae
CBS6340 NR_138247.1 99.259 270 2 0 28 297 1 270 1.69e-138 488 297 NR_138247.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Lachancea;Lachancea quebecensis
CBS5833 NR_164379.1 99.281 139 1 0 1 139 1 139 1.04e-67 252 139 NR_164379.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Metschnikowiaceae;Metschnikowia;Metschnikowia pulcherrima
CBS5834 NR_111252.1 100.000 108 0 0 39 146 1 108 4.04e-52 200 146 NR_111252.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Metschnikowiaceae;Metschnikowia;Metschnikowia reukaufii
CBS142 NR_149343.1 99.556 225 1 0 6 230 1 225 2.87e-115 411 230 NR_149343.1 Eukaryota;Basidiomycota;Tremellomycetes;Filobasidiales;Filobasidiaceae;Naganishia;Naganishia albida
CBS139 NR_130670.1 100.000 173 0 0 17 189 1 173 4.00e-88 320 189 NR_130670.1 UnassignedUnassignedUnassignedUnassignedUnassignedUnassignedUnassigned
CBS188 NR_153285.1 95.679 162 6 1 1 161 7 168 7.37e-70 259 161 NR_153285.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia;Pichia cephalocereana
CBS2617 NR_153294.1 100.000 154 0 0 1 154 9 162 1.15e-77 285 154 NR_153294.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia;Pichia terricola
CBS7808 NR_077096.1 100.000 212 0 0 17 228 1 212 1.03e-109 392 228 NR_077096.1 Eukaryota;Basidiomycota;Microbotryomycetes;Sporidiobolales;Sporidiobolaceae;Rhodotorula;Rhodotorula babjevae
CBS821 NR_165986.1 100.000 364 0 0 5 368 1 364 0.0 673 368 NR_165986.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycodaceae;Saccharomycodes;Saccharomycodes ludwigii
CBS746 NR_160054.1 100.000 241 0 0 3 243 1 241 8.35e-126 446 243 NR_160054.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Zygotorulaspora;Zygotorulaspora florentina
CBS604 NR_165186.1 100.000 232 0 0 246 477 9 240 1.72e-120 429 477 NR_165186.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Candida;Candida metapsilosis
CBS604 NR_165186.1 88.285 239 7 13 1 225 9 240 1.43e-71 267 477 NR_165186.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Debaryomycetaceae;Candida;Candida metapsilosis
CBS1146 NR_111257.1 100.000 331 0 0 39 369 1 331 1.21e-175 612 369 NR_111257.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Saccharomycetaceae;Torulaspora;Torulaspora delbrueckii
CBS107 NR_111195.1 100.000 138 0 0 27 164 1 138 9.73e-69 255 164 NR_111195.1 Eukaryota;Ascomycota;Saccharomycetes;Saccharomycetales;Pichiaceae;Pichia;Pichia membranifaciens
......@@ -49,7 +49,7 @@ options(DT.options = list(pageLength = 10,
buttons = c('copy', 'csv', 'excel', 'pdf', 'print')))
```
# MEAT
```{bash, eval=F}
# Genologin
......@@ -58,22 +58,34 @@ sh dada2_frogs.sh
```
```{bash, eval=F}
scp orue@genologin.toulouse.inra.fr:/work/frogsfungi/FungiPubli/Real_mock/METABARFOOD/REAL/results/DADA2_FROGS/ITS1/frogs.biom REAL/ITS1.biom
scp orue@genologin.toulouse.inra.fr:/work/frogsfungi/FungiPubli/Real_mock/METABARFOOD/REAL/results/DADA2_FROGS/ITS2/frogs.biom REAL/ITS2.biom
scp orue@genologin.toulouse.inra.fr:/work/frogsfungi/FungiPubli/Real_mock/METABARFOOD/REAL/results/DADA2_FROGS/D1D2/frogs.biom REAL/D1D2.biom
scp orue@genologin.toulouse.inra.fr:/work/frogsfungi/FungiPubli/Real_mock/METABARFOOD/REAL/results/DADA2_FROGS/RPB2/frogs.biom REAL/RPB2.biom
scp orue@genologin.toulouse.inra.fr:/work/frogsfungi/FungiPubli/Real_mock/METABARFOOD/REAL/results/DADA2_FROGS/ITS1/frogs.tsv REAL/ITS1.tsv
scp orue@genologin.toulouse.inra.fr:/work/frogsfungi/FungiPubli/Real_mock/METABARFOOD/REAL/results/DADA2_FROGS/ITS2/frogs.tsv REAL/ITS2.tsv
scp orue@genologin.toulouse.inra.fr:/work/frogsfungi/FungiPubli/Real_mock/METABARFOOD/REAL/results/DADA2_FROGS/D1D2/frogs.tsv REAL/D1D2.tsv
scp orue@genologin.toulouse.inra.fr:/work/frogsfungi/FungiPubli/Real_mock/METABARFOOD/REAL/results/DADA2_FROGS/RPB2/frogs.tsv REAL/RPB2.tsv
scp orue@genologin.toulouse.inra.fr:/work/frogsfungi/FungiPubli/Real_mock/METABARFOOD/REAL/results/DADA2_FROGS/ITS1/multiaff.tsv REAL/ITS1_multiaff.tsv
scp orue@genologin.toulouse.inra.fr:/work/frogsfungi/FungiPubli/Real_mock/METABARFOOD/REAL/results/DADA2_FROGS/ITS2/multiaff.tsv REAL/ITS2_multiaff.tsv
scp orue@genologin.toulouse.inra.fr:/work/frogsfungi/FungiPubli/Real_mock/METABARFOOD/REAL/results/DADA2_FROGS/D1D2/multiaff.tsv REAL/D1D2_multiaff.tsv
scp orue@genologin.toulouse.inra.fr:/work/frogsfungi/FungiPubli/Real_mock/METABARFOOD/REAL/results/DADA2_FROGS/RPB2/multiaff.tsv REAL/RPB2_multiaff.tsv
#scp orue@genologin.toulouse.inra.fr:/work/frogsfungi/FungiPubli/Real_mock/METABARFOOD/REAL/results/DADA2_FROGS/ITS1/frogs.biom MEAT/ITS1.biom
#scp orue@genologin.toulouse.inra.fr:/work/frogsfungi/FungiPubli/Real_mock/METABARFOOD/REAL/results/DADA2_FROGS/ITS2/frogs.biom MEAT/ITS2.biom
#scp orue@genologin.toulouse.inra.fr:/work/frogsfungi/FungiPubli/Real_mock/METABARFOOD/REAL/results/DADA2_FROGS/D1D2/frogs.biom MEAT/D1D2.biom
scp orue@genologin.toulouse.inra.fr:/work/frogsfungi/FungiPubli/Real_mock/METABARFOOD/REAL/results/DADA2_FROGS/RPB2/frogs.biom MEAT/RPB2.biom
#scp orue@genologin.toulouse.inra.fr:/work/frogsfungi/FungiPubli/Real_mock/METABARFOOD/REAL/results/DADA2_FROGS/ITS1/frogs.tsv MEAT/ITS1.tsv
#scp orue@genologin.toulouse.inra.fr:/work/frogsfungi/FungiPubli/Real_mock/METABARFOOD/REAL/results/DADA2_FROGS/ITS2/frogs.tsv MEAT/ITS2.tsv
#scp orue@genologin.toulouse.inra.fr:/work/frogsfungi/FungiPubli/Real_mock/METABARFOOD/REAL/results/DADA2_FROGS/D1D2/frogs.tsv MEAT/D1D2.tsv
scp orue@genologin.toulouse.inra.fr:/work/frogsfungi/FungiPubli/Real_mock/METABARFOOD/REAL/results/DADA2_FROGS/RPB2/frogs.tsv MEAT/RPB2.tsv
#scp orue@genologin.toulouse.inra.fr:/work/frogsfungi/FungiPubli/Real_mock/METABARFOOD/REAL/results/DADA2_FROGS/ITS1/multiaff.tsv MEAT/ITS1_multiaff.tsv
#scp orue@genologin.toulouse.inra.fr:/work/frogsfungi/FungiPubli/Real_mock/METABARFOOD/REAL/results/DADA2_FROGS/ITS2/multiaff.tsv MEAT/ITS2_multiaff.tsv
#scp orue@genologin.toulouse.inra.fr:/work/frogsfungi/FungiPubli/Real_mock/METABARFOOD/REAL/results/DADA2_FROGS/D1D2/multiaff.tsv MEAT/D1D2_multiaff.tsv
scp orue@genologin.toulouse.inra.fr:/work/frogsfungi/FungiPubli/Real_mock/METABARFOOD/REAL/results/DADA2_FROGS/RPB2/multiaff.tsv MEAT/RPB2_multiaff.tsv
```
## Preparation of final BIOM files {.tabset}
### ITS1
### ITS2
### D1D2
### RPB2
## Analysis
```{r, eval=F}
if (!file.exists("REAL/ITS1.rds")) {
biomfile <- "REAL/ITS1.biom"
......@@ -206,3 +218,45 @@ p + facet_grid(". ~ Marker", scales = "free_x", space = "free")
p <- plot_composition(physeq = all, taxaRank1 = "Kingdom", taxaSet1 = "Fungi", taxaRank2 = "Species", numberOfTaxa = 22, x = "Sample")
p + facet_grid(". ~ Marker", scales = "free_x", space = "free")
```
# CHEESE
```{bash, eval=F}
# Genologin
cd /work/frogsfungi/FungiPubli/Real_mock/METABARFOOD/CHEESE_REAL/scripts
sh dada2_frogs.sh
```
```{bash, eval=F}
#scp orue@genologin.toulouse.inra.fr:/work/frogsfungi/FungiPubli/Real_mock/METABARFOOD/CHEESE_REAL/results/DADA2_FROGS/ITS1/frogs.biom CHEESE/ITS1.biom
#scp orue@genologin.toulouse.inra.fr:/work/frogsfungi/FungiPubli/Real_mock/METABARFOOD/CHEESE_REAL/results/DADA2_FROGS/ITS2/frogs.biom CHEESE/ITS2.biom
#scp orue@genologin.toulouse.inra.fr:/work/frogsfungi/FungiPubli/Real_mock/METABARFOOD/CHEESE_REAL/results/DADA2_FROGS/D1D2/frogs.biom CHEESE/D1D2.biom
scp orue@genologin.toulouse.inra.fr:/work/frogsfungi/FungiPubli/Real_mock/METABARFOOD/CHEESE_REAL/results/DADA2_FROGS/RPB2/frogs.biom CHEESE/RPB2.biom
#scp orue@genologin.toulouse.inra.fr:/work/frogsfungi/FungiPubli/Real_mock/METABARFOOD/CHEESE_REAL/results/DADA2_FROGS/ITS1/frogs.tsv CHEESE/ITS1.tsv
#scp orue@genologin.toulouse.inra.fr:/work/frogsfungi/FungiPubli/Real_mock/METABARFOOD/CHEESE_REAL/results/DADA2_FROGS/ITS2/frogs.tsv CHEESE/ITS2.tsv
#scp orue@genologin.toulouse.inra.fr:/work/frogsfungi/FungiPubli/Real_mock/METABARFOOD/CHEESE_REAL/results/DADA2_FROGS/D1D2/frogs.tsv CHEESE/D1D2.tsv
scp orue@genologin.toulouse.inra.fr:/work/frogsfungi/FungiPubli/Real_mock/METABARFOOD/CHEESE_REAL/results/DADA2_FROGS/RPB2/frogs.tsv CHEESE/RPB2.tsv
#scp orue@genologin.toulouse.inra.fr:/work/frogsfungi/FungiPubli/Real_mock/METABARFOOD/CHEESE_REAL/results/DADA2_FROGS/ITS1/multiaff.tsv CHEESE/ITS1_multiaff.tsv
#scp orue@genologin.toulouse.inra.fr:/work/frogsfungi/FungiPubli/Real_mock/METABARFOOD/CHEESE_REAL/results/DADA2_FROGS/ITS2/multiaff.tsv CHEESE/ITS2_multiaff.tsv
#scp orue@genologin.toulouse.inra.fr:/work/frogsfungi/FungiPubli/Real_mock/METABARFOOD/CHEESE_REAL/results/DADA2_FROGS/D1D2/multiaff.tsv CHEESE/D1D2_multiaff.tsv
scp orue@genologin.toulouse.inra.fr:/work/frogsfungi/FungiPubli/Real_mock/METABARFOOD/CHEESE_REAL/results/DADA2_FROGS/RPB2/multiaff.tsv CHEESE/RPB2_multiaff.tsv
```
## Preparation of final BIOM files {.tabset}
### ITS1
### ITS2
### D1D2
### RPB2
## Analysis
......@@ -11,7 +11,7 @@
<meta name="author" content="Olivier Rué" />
<meta name="date" content="2021-09-30" />
<meta name="date" content="2021-10-01" />
<title>References analysis</title>
......@@ -287,7 +287,7 @@ div.tocify {
<h1 class="title toc-ignore">References analysis</h1>
<h4 class="author">Olivier Rué</h4>
<h4 class="date">2021-09-30</h4>
<h4 class="date">2021-10-01</h4>
</div>
......@@ -352,32 +352,32 @@ summary(t %&gt;% filter(marker == &quot;RPB2&quot;) %&gt;% select(pident))</code
<h2>ITS1</h2>
<pre class="r"><code>infos &lt;- full_join(t_its1,ggd,by=&quot;Strain&quot;) %&gt;% filter(marker == &quot;ITS1&quot;) %&gt;% select(Species, SSpecies, pident, pcov)
infos %&gt;% datatable()</code></pre>
<div id="htmlwidget-421cdb5e5dde07a62835" style="width:100%;height:auto;" class="datatables html-widget"></div>
<script type="application/json" data-for="htmlwidget-421cdb5e5dde07a62835">{"x":{"filter":"none","data":[["1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17","18","19","20","21","22","23","24","25","26","27","28","29","30","31","32","33","34","35","36","37","38","39","40","41","42","43","44","45","46","47","48","49","50","51","52","53","54","55","56","57","58","59","60","61","62","63","64","65","66","67","68","69","70","71","72","73","74","75","76","77","78","79","80","81","82","83","84","85","86","87","88","89","90","91","92","93","94","95","96","97","98","99","100","101","102","103","104","105","106","107","108","109","110","111","112","113","114","115","116","117","118","119","120","121","122","123","124","125","126","127","128","129","130","131","132","133","134","135","136","137","138","139","140","141","142","143"],["Aspergillus candidus","Aspergillus ochraceus","Cladosporium allicinum","Cladosporium cladosporioides","Cladosporium sphaerospermum","Eurotium amstelodami","Guehomyces pullulans","Neosartorya fischeri","Penicillium aurantiogriseum","Penicillium bialowiezense","Penicillium brevicompactum","Penicillium chermesinum","Penicillium chrysogenum_F7M11","Penicillium commune","Penicillium crustosum","Penicillium dipodomyicola","Penicillium expansum","Penicillium gladioli","Penicillium nordicum","Penicillium olsonii","Penicillium palitans","Penicillium salamii","Penicillium verrucosum","Penicillium viridicatum","Rhodotorula mucilaginosa","Torulopsis candida","Yarrowia alimentaria","Yarrowia bubula","Yarrowia lipolytica","Yarrowia porcina","Candida aaseri","Candida apicola","Kazachstania saulgeensis","Saccharomyces bayanus","Saccharomyces pastorianus","Saccharomyces uvarum","Saturnispora diversa","Schizosaccharomyces japonicus","Candida carpophila","Hyphopichia pseudoburtonii","Kazachstania barnettii","Kazachstania bozae","Kazachstania bulderi","Kazachstania exigua","Kazachstania humilis","Kazachstania servazzii","Pichia norvegensis","Penicillium camemberti var. camemberti","Penicillium nalgiovense","Penicillium solitum","Aspergillus fumigatus","Cyberlindnera jadinii","Geotrichum candidum","Lichtheimia corymbifera","Mucor circinelloides","Mucor fuscus","Mucor lanceolatus","Mucor racemosus","Penicillium antarcticum","Penicillium chrysogenum_CBS","Penicillium roqueforti","Trichosporon asahii","Yarrowia deformans","Candida zeylanoides","Candida azyma","Candida metapsilosis","Candida vini","Cryptococcus neoformans","Cystobasidium slooffiae","Dekkera bruxellensis","Diutina rugosa","Diutina rugosa","Hanseniaspora occidentalis","Hanseniaspora opuntiae","Hyphopichia burtonii","Meyerozyma caribbica","Mrakia frigida","Papiliotrema flavescens","Papiliotrema terrestris","Rhodotorula nothofagi","Schwanniomyces etchellsii","Starmerella bacillaris","Symmetrospora coprosmae","Trigonopsis vinaria","Candida glabrata","Kazachstania unispora","Kluyveromyces marxianus","Lodderomyces elongisporus","Meyerozyma guilliermondii","Millerozyma farinosa","Pichia fermentans","Pichia kudriavzevii","Pichia occidentalis","Rhodotorula mucilaginosa var. mucilaginosa","Debaryomyces hansenii","Aureobasidium pullulans","Candida intermedia","Clavispora lusitaniae","Zygosaccharomyces rouxii","Saccharomyces cerevisiae","Wickerhamomyces anomalus","Aciculoconidium aculeatum","Barnettozyma californica","Candida santamariae","Cyberlindnera mrakii","Diutina catenulata","Geotrichum klebahnii","Hanseniaspora valbyensis","Kluyveromyces dobzhanskii","Kluyveromyces lactis var. lactis","Kregervanrija fluxuum","Lachancea fermentati","Lachancea waltii","Naganishia globosa","Nakazawaea holstii","Rhodotorula diobovata","Starmerella lactis-condensi","Candida tropicalis","Lachancea kluyveri","Starmerella stellata","Candida sake","Rhodotorula glutinis","Sporobolomyces roseus","Citeromyces matritensis","Cystobasidium minutum","Filobasidium magnum","Hanseniaspora guilliermondii","Hanseniaspora osmophila","Hanseniaspora uvarum","Hanseniaspora vineae","Lachancea thermotolerans","Metschnikowia pulcherrima","Metschnikowia reukaufii","Naganishia albida","Papiliotrema laurentii","Pichia kluyveri","Pichia terricola","Rhodotorula babjevae","Saccharomycodes ludwigii","Zygotorulaspora florentina","Candida parapsilosis","Torulaspora delbrueckii","Pichia membranifaciens"],["Aspergillus candidus","Aspergillus elegans","Mycosphaerella tassiana","Cladosporium sp","Cladosporium sphaerospermum","Aspergillus montevidensis","Tausonia pullulans","Aspergillus fischeri","Penicillium aurantiogriseum","Penicillium bialowiezense","Penicillium brevicompactum","Penicillium chermesinum","Penicillium chrysogenum","Penicillium sp","Penicillium sp","Penicillium concentricum","Penicillium expansum","Penicillium gladioli","Penicillium thymicola","Penicillium salamorum","Penicillium sp","Penicillium salamorum","Penicillium thymicola","Penicillium aurantiogriseum","Rhodotorula mucilaginosa","Candida saitoana","Saccharomycetales 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<p>83 hits have the same Species.</p>
</div>
<div id="its2" class="section level2">
<h2>ITS2</h2>
<pre class="r"><code>infos &lt;- full_join(t_its2,ggd,by=&quot;Strain&quot;) %&gt;% filter(marker == &quot;ITS2&quot;) %&gt;% select(Species, SSpecies, pident, pcov)
infos %&gt;% datatable()</code></pre>
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guilliermondii","Millerozyma farinosa","Pichia fermentans","Pichia kudriavzevii","Pichia occidentalis","Rhodotorula mucilaginosa var. mucilaginosa","Debaryomyces hansenii","Aureobasidium pullulans","Candida intermedia","Clavispora lusitaniae","Zygosaccharomyces rouxii","Saccharomyces cerevisiae","Wickerhamomyces anomalus","Aciculoconidium aculeatum","Barnettozyma californica","Candida santamariae","Cyberlindnera mrakii","Diutina catenulata","Geotrichum klebahnii","Hanseniaspora valbyensis","Kluyveromyces dobzhanskii","Kluyveromyces lactis var. lactis","Kregervanrija fluxuum","Lachancea fermentati","Lachancea waltii","Naganishia globosa","Nakazawaea holstii","Rhodotorula diobovata","Starmerella lactis-condensi","Candida tropicalis","Lachancea kluyveri","Starmerella stellata","Candida sake","Rhodotorula glutinis","Sporobolomyces roseus","Citeromyces matritensis","Cystobasidium minutum","Filobasidium magnum","Hanseniaspora guilliermondii","Hanseniaspora osmophila","Hanseniaspora uvarum","Hanseniaspora vineae","Lachancea thermotolerans","Metschnikowia pulcherrima","Metschnikowia reukaufii","Naganishia albida","Papiliotrema laurentii","Pichia kluyveri","Pichia terricola","Rhodotorula babjevae","Saccharomycodes ludwigii","Zygotorulaspora florentina","Candida parapsilosis","Torulaspora delbrueckii","Pichia membranifaciens"],["Aspergillus candidus","Aspergillus steynii","Tylospora sp","Tylospora sp","Tylospora sp","Aspergillus costiformis","Tausonia pullulans","Aspergillus fischeri","Kendrickiella phycomyces","Kendrickiella phycomyces","Penicillium brevicompactum","Penicillium chrysogenum","Penicillium aethiopicum","Penicillium aethiopicum","Penicillium aethiopicum","Penicillium aethiopicum","Penicillium aethiopicum","Penicillium aethiopicum","Penicillium aethiopicum","Penicillium brevicompactum","Penicillium aethiopicum","Penicillium salamorum","Penicillium aethiopicum","Penicillium aethiopicum","Rhodotorula mucilaginosa","Candida saitoana","Saccharomycetales sp","Yarrowia bubula","Yarrowia lipolytica","Yarrowia porcina","Dekkera bruxellensis","Candida apicola","Fungi sp","Saccharomyces paradoxus","Saccharomyces bayanus","Saccharomyces paradoxus","Saturnispora diversa","Schizosaccharomyces japonicus","Meyerozyma smithsonii","Hyphopichia pseudoburtonii","Kazachstania barnettii","Kazachstania sp","Kazachstania bulderi","Kazachstania exigua","Kazachstania humilis","Kazachstania servazzii","Pichia norvegensis","Penicillium aethiopicum","Penicillium aethiopicum","Penicillium annulatum","Aspergillus fumigatus","Cyberlindnera jadinii","Dipodascus geotrichum","Lichtheimia corymbifera","Mucor circinelloides","Mucor fuscus","Mucor lanceolatus","Mucor racemosus","Penicillium herquei","Penicillium aethiopicum","Penicillium aethiopicum","Trichosporon asahii","Yarrowia porcina","Candida zeylanoides","Wickerhamiella sp","Candida metapsilosis","Kregervanrija fluxuum","Cryptococcus neoformans","Cystobasidium slooffiae","Dekkera bruxellensis","Dekkera bruxellensis","Saccharomycetales sp","Schwanniomyces occidentalis","Hanseniaspora opuntiae","Hyphopichia burtonii","Meyerozyma smithsonii","Mrakia frigida","Papiliotrema flavescens","Papiliotrema terrestris","Rhodotorula nothofagi","Schwanniomyces etchellsii","Saccharomycetales sp","Symmetrospora coprosmae","Trigonopsis vinaria","Candida glabrata","Kazachstania unispora","Kluyveromyces marxianus","Lodderomyces elongisporus","Meyerozyma guilliermondii","Millerozyma farinosa","Saccharomycetales sp","Issatchenkia orientalis","Saccharomycetales sp","Rhodotorula mucilaginosa","Debaryomyces hansenii","Aureobasidium leucospermi","Saccharomycetales sp","Clavispora lusitaniae","Zygosaccharomyces rouxii","Saccharomyces paradoxus","Wickerhamomyces anomalus","Aciculoconidium aculeatum","Barnettozyma californica","Dekkera bruxellensis","Cyberlindnera mrakii","Diutina catenulata","Geotrichum klebahnii","Hanseniaspora valbyensis","Kluyveromyces dobzhanskii","Kluyveromyces lactis","Kregervanrija fluxuum","Lachancea fermentati","Lachancea waltii","Naganishia vaughanmartiniae","Nakazawaea holstii","Rhodotorula diobovata","Starmerella lactis-condensi","Candida tropicalis","Lachancea kluyveri","Candida stellata","Candida sake","Rhodotorula glutinis","Sporobolomyces roseus","Citeromyces matritensis","Cystobasidium minuta","Filobasidium magnum","Hanseniaspora guilliermondii","Hanseniaspora osmophila","Hanseniaspora uvarum","Hanseniaspora vineae","Lachancea quebecensis","Metschnikowia sp","Metschnikowia reukaufii","Fungi sp","Papiliotrema laurentii","Pichia eremophila","Pichia terricola","Rhodotorula babjevae","Saccharomycodes ludwigii","Zygotorulaspora florentina","Candida parapsilosis","Torulaspora delbrueckii","Pichia membranifaciens"],[1,0.99669,1,0.99662,0.96633,1,1,0.97106,0.98966,0.98966,0.98294,0.98966,1,0.99315,0.98973,0.99656,0.99313,0.98976,0.99313,0.96939,0.99315,1,0.99313,0.99313,1,1,0.99451,1,0.97765,1,1,1,0.99449,0.98945,1,0.99208,1,0.99743,0.99038,0.99526,0.99419,0.97113,1,1,0.99718,1,0.99602,0.98973,0.99656,0.98625,1,0.98601,0.99462,0.97656,1,0.99642,1,1,0.99308,0.99656,0.97938,1,0.95897,1,1,1,1,0.99365,1,1,1,1,0.99695,1,0.99119,0.99038,1,1,0.98707,1,0.99371,1,1,0.99636,1,0.99719,1,1,1,1,0.97807,0.99667,0.99595,1,0.99363,0.98947,1,1,0.99492,0.98892,0.9878,1,1,1,1,0.96087,1,1,0.99148,1,1,1,1,1,1,1,1,0.98491,1,0.99015,0.98276,1,1,0.99673,0.99381,1,0.99688,0.99469,0.98039,0.99196,1,1,1,0.97594,1,0.98712,1,1,1,1,1,1,1],[0.961661341853035,0.958730158730159,1,1,1,0.875,0.893732970027248,1.00647249190939,0.941558441558442,0.941558441558442,0.951298701298701,0.950819672131147,0.938709677419355,0.938906752411576,0.938906752411576,0.938709677419355,0.938709677419355,0.939102564102564,0.938709677419355,0.951456310679612,0.938906752411576,0.873376623376623,0.938709677419355,0.938709677419355,0.892857142857143,0.882882882882883,0.94300518134715,1,0.895,1,1,0.794425087108014,0.887530562347188,0.913253012048193,1,0.904534606205251,0.779850746268657,0.868303571428571,0.920353982300885,0.861224489795918,0.947658402203857,0.907142857142857,0.906801007556675,0.90126582278481,0.949061662198391,0.902313624678663,0.880701754385965,0.938906752411576,0.938709677419355,0.929712460063898,0.875399361022364,0.88,0.907317073170732,0.962406015037594,0.882175226586103,0.874608150470219,0.875,0.966463414634146,0.926282051282051,0.938709677419355,0.938709677419355,0.905660377358491,1,0.87125748502994,1,0.812698412698413,0.858181818181818,0.94311377245509,0.888571428571429,0.806122448979592,0.193877551020408,0.784671532846715,0.893732970027248,0.974212034383954,0.853383458646617,0.920353982300885,0.897637795275591,0.893175074183976,0.878787878787879,0.892265193370166,0.921739130434783,0.836134453781513,0.889204545454545,0.878594249201278,0.896551724137931,0.929503916449086,0.900510204081633,0.861702127659574,0.884955752212389,0.885964912280702,0.853932584269663,0.977198697068404,0.939163498098859,0.892857142857143,0.920821114369501,0.940594059405941,0.912844036697248,0.818604651162791,0.985,0.94750656167979,0.97910447761194,0.966019417475728,0.88125,0.955089820359281,0.885885885885886,1,0.808823529411765,0.86,0.900255754475703,0.903061224489796,0.82051282051282,0.893258426966292,0.892957746478873,0.970189701897019,0.884955752212389,0.891364902506964,0.792114695340502,0.920138888888889,0.893854748603352,0.838842975206612,0.924302788844621,0.890140845070423,0.889518413597734,0.88953488372093,0.925501432664756,0.9,0.894150417827298,0.989501312335958,0.994428969359331,0.992021276595745,0.957746478873239,1,1,1.01907356948229,0.87962962962963,0.903100775193798,0.838174273858921,0.882022471910112,0.892351274787535,0.879746835443038,0.856088560885609,0.903703703703704,0.86551724137931]],"container":"<table class=\"display\">\n <thead>\n <tr>\n <th> <\/th>\n <th>Species<\/th>\n <th>SSpecies<\/th>\n <th>pident<\/th>\n <th>pcov<\/th>\n <\/tr>\n <\/thead>\n<\/table>","options":{"pageLength":10,"scrollX":true,"language":{"search":"Filter:"},"dom":"Bfrtip","buttons":["copy","csv","excel","pdf","print"],"columnDefs":[{"className":"dt-right","targets":[3,4]},{"orderable":false,"targets":0}],"order":[],"autoWidth":false,"orderClasses":false}},"evals":[],"jsHooks":[]}</script>
<p>83 hits have the same Species.</p>
</div>
<div id="d1d2" class="section level2">
<h2>D1D2</h2>
<pre class="r"><code>infos &lt;- full_join(t_d1d2,ggd,by=&quot;Strain&quot;) %&gt;% filter(marker == &quot;D1D2&quot;) %&gt;% select(Species, SSpecies, pident, pcov)
infos %&gt;% datatable()</code></pre>
<div id="htmlwidget-79fff9903a22abc5bcab" style="width:100%;height:auto;" class="datatables html-widget"></div>
<script type="application/json" data-for="htmlwidget-79fff9903a22abc5bcab">{"x":{"filter":"none","data":[["1","2","3","4","5","6","7","8","9","10","11","12","13","14","15","16","17","18","19","20","21","22","23","24","25","26","27","28","29","30","31","32","33","34","35","36","37","38","39","40","41","42","43","44","45","46","47","48","49","50","51","52","53","54","55","56","57","58","59","60","61","62","63","64","65","66","67","68","69","70","71","72","73","74","75","76","77","78","79","80","81","82","83","84","85","86","87","88","89","90","91","92","93","94","95","96","97","98","99","100","101","102","103","104","105","106","107","108","109","110","111","112","113","114","115","116","117","118","119","120","121","122","123","124","125","126","127","128","129","130","131","132","133","134","135","136","137","138","139","140","141","142","143"],["Aspergillus candidus","Aspergillus ochraceus","Cladosporium allicinum","Cladosporium cladosporioides","Cladosporium sphaerospermum","Eurotium amstelodami","Guehomyces pullulans","Neosartorya fischeri","Penicillium aurantiogriseum","Penicillium bialowiezense","Penicillium brevicompactum","Penicillium chermesinum","Penicillium chrysogenum_F7M11","Penicillium commune","Penicillium crustosum","Penicillium dipodomyicola","Penicillium expansum","Penicillium gladioli","Penicillium nordicum","Penicillium olsonii","Penicillium palitans","Penicillium salamii","Penicillium verrucosum","Penicillium viridicatum","Rhodotorula mucilaginosa","Torulopsis candida","Yarrowia alimentaria","Yarrowia bubula","Yarrowia lipolytica","Yarrowia porcina","Candida aaseri","Candida apicola","Kazachstania saulgeensis","Saccharomyces bayanus","Saccharomyces pastorianus","Saccharomyces uvarum","Saturnispora diversa","Schizosaccharomyces japonicus","Candida carpophila","Hyphopichia pseudoburtonii","Kazachstania barnettii","Kazachstania bozae","Kazachstania bulderi","Kazachstania exigua","Kazachstania humilis","Kazachstania servazzii","Pichia norvegensis","Penicillium camemberti var. camemberti","Penicillium nalgiovense","Penicillium solitum","Aspergillus fumigatus","Cyberlindnera jadinii","Geotrichum candidum","Lichtheimia corymbifera","Mucor circinelloides","Mucor fuscus","Mucor lanceolatus","Mucor racemosus","Penicillium antarcticum","Penicillium chrysogenum_CBS","Penicillium roqueforti","Trichosporon asahii","Yarrowia deformans","Candida zeylanoides","Candida azyma","Candida metapsilosis","Candida vini","Cryptococcus neoformans","Cystobasidium slooffiae","Dekkera bruxellensis","Diutina rugosa","Hanseniaspora occidentalis","Hanseniaspora opuntiae","Hyphopichia burtonii","Meyerozyma caribbica","Mrakia frigida","Papiliotrema flavescens","Papiliotrema terrestris","Rhodotorula nothofagi","Schwanniomyces etchellsii","Starmerella bacillaris","Symmetrospora coprosmae","Trigonopsis vinaria","Candida glabrata","Kazachstania unispora","Kluyveromyces marxianus","Lodderomyces elongisporus","Meyerozyma guilliermondii","Millerozyma farinosa","Pichia fermentans","Pichia kudriavzevii","Pichia occidentalis","Rhodotorula mucilaginosa var. mucilaginosa","Debaryomyces hansenii","Aureobasidium pullulans","Candida intermedia","Clavispora lusitaniae","Zygosaccharomyces rouxii","Saccharomyces cerevisiae","Wickerhamomyces anomalus","Aciculoconidium aculeatum","Barnettozyma californica","Candida santamariae","Cyberlindnera mrakii","Diutina catenulata","Geotrichum klebahnii","Hanseniaspora valbyensis","Kluyveromyces dobzhanskii","Kluyveromyces lactis var. lactis","Kregervanrija fluxuum","Lachancea fermentati","Lachancea waltii","Naganishia globosa","Nakazawaea holstii","Rhodotorula diobovata","Starmerella lactis-condensi","Candida tropicalis","Lachancea kluyveri","Starmerella stellata","Candida sake","Rhodotorula glutinis","Sporobolomyces roseus","Citeromyces matritensis","Cystobasidium minutum","Filobasidium magnum","Filobasidium magnum","Hanseniaspora guilliermondii","Hanseniaspora osmophila","Hanseniaspora uvarum","Hanseniaspora vineae","Lachancea thermotolerans","Metschnikowia pulcherrima","Metschnikowia reukaufii","Naganishia albida","Papiliotrema laurentii","Pichia kluyveri","Pichia terricola","Rhodotorula babjevae","Saccharomycodes ludwigii","Zygotorulaspora florentina","Candida parapsilosis","Torulaspora delbrueckii","Pichia membranifaciens"],["Aspergillus oryzae RIB40","Aspergillus sclerotiorum","Cladosporium allicinum","Cladosporium cladosporioides","Cladosporium sphaerospermum UM 843","Aspergillus cristatus","Mrakia blollopis","Aspergillus fumigatus Af293","Penicillium griseofulvum","Penicillium brevicompactum","Penicillium brevicompactum","Penicillium subrubescens","Penicillium nalgiovense","Penicillium griseofulvum","Penicillium griseofulvum","Penicillium griseofulvum","Penicillium griseofulvum","Penicillium griseofulvum","Penicillium nalgiovense","Penicillium brevicompactum","Penicillium griseofulvum","Penicillium brevicompactum","Penicillium nalgiovense","Penicillium griseofulvum","Alloscardovia sp.","Scheffersomyces shehatae","Yarrowia lipolytica","Yarrowia lipolytica","Yarrowia lipolytica","Yarrowia lipolytica","Yamadazyma sp.","Candida apicola","Kazachstania exigua","Saccharomyces eubayanus","Saccharomyces eubayanus","Saccharomyces uvarum MCYC 623","Saturnispora diversa","Schizosaccharomyces japonicus yFS275","Meyerozyma guilliermondii","Hyphopichia burtonii","Kazachstania barnettii","Kazachstania exigua","Kazachstania barnettii","Kazachstania exigua","Kazachstania barnettii","Kazachstania servazzii","Pichia norvegensis","Penicillium griseofulvum","Penicillium nalgiovense","Penicillium subrubescens","Aspergillus fumigatus Af293","Cyberlindnera jadinii NBRC 0988","Galactomyces candidus","Lichtheimia corymbifera","Lichtheimia ramosa B5399","Mucor irregularis","Mucor racemosus","Mucor racemosus","Penicillium arizonense","Penicillium nalgiovense","Penicillium griseofulvum","Tetradesmus obliquus","Yarrowia lipolytica","Talaromyces marneffei ATCC 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aculeatum","Barnettozyma californica","Talaromyces marneffei ATCC 18224","Cyberlindnera mrakii","Spathaspora passalidarum NRRL Y-27907","Galactomyces candidus","Hanseniaspora valbyensis","Kluyveromyces wickerhamii UCD 54-210","Kluyveromyces lactis","Kregervanrija fluxuum","Lachancea fermentati","Lachancea waltii NCYC 2644","unknown species","Nakazawaea holstii","Rhodotorula graminis WP1","Starmerella bombicola","Candida tropicalis","Naumovozyma castellii NRRL Y-12630","Starmerella bacillaris","Scheffersomyces shehatae","Rhodotorula graminis WP1","Alloscardovia sp.","Citeromyces matritensis","Cystobasidium laryngis","Mrakia frigida","Mrakia frigida","Hanseniaspora opuntiae","Hanseniaspora osmophila","Hanseniaspora opuntiae","Hanseniaspora osmophila","Lachancea thermotolerans CBS 6340","Metschnikowia fructicola 277","Metschnikowia reukaufii","unknown species","Papiliotrema laurentii RY1","Pichia kluyveri","Pichia terricola","Rhodotorula graminis WP1","Saccharomycodes ludwigii","Zygotorulaspora mrakii","Candida orthopsilosis Co 90-125","Torulaspora delbrueckii","Pichia membranifaciens"],[0.96769,0.98226,1,1,0.98684,0.99674,0.93344,0.99511,0.99837,0.98377,0.99838,0.9658,0.99837,0.99674,0.99674,1,0.99511,0.99511,0.99674,0.99188,0.99674,0.98379,0.99674,0.99837,1,0.93126,0.88909,0.90597,0.99818,0.9235,0.96341,0.99809,0.9949,1,1,1,0.99819,0.99684,0.99411,0.89672,1,0.99653,0.99491,1,0.97966,1,1,0.99674,1,0.99837,0.99854,0.99355,0.98543,0.95492,0.99714,0.92,0.9171,0.99308,0.9759,0.99837,0.99837,0.93302,0.93807,0.95928,1,0.99397,0.99829,0.99844,0.95639,0.99029,0.85827,0.94127,1,0.99824,0.99187,0.99533,0.96812,0.9689,0.88321,1,0.9981,0.90373,1,1,1,1,1,0.99512,0.99675,1,0.99835,1,1,0.99837,1,0.9911,1,1,1,0.99831,0.98093,1,0.96254,0.99831,0.90256,0.89967,1,0.98299,1,0.99828,1,0.99675,0.93171,1,0.99503,0.90138,1,1,0.92586,0.93301,0.99834,0.8748,1,0.95707,0.98295,0.98333,0.99675,0.99674,0.99187,0.98369,1,0.97601,0.9982,0.91186,0.99842,0.9983,0.99825,0.99834,1,0.95041,0.99184,1,0.99829],[1.00161812297735,1.00323624595469,1,1,1,1,1.0015503875969,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1.0016393442623,1.01851851851852,1.01841620626151,1.0018281535649,1.01104972375691,1,1,0.959216965742251,1,1,1,0.958333333333333,1,1,1.00734394124847,0.960848287112561,0.986301369863014,0.960848287112561,0.959216965742251,0.962479608482871,0.960975609756098,0.961352657004831,1,1,1,1.00073099415205,1,1.00182481751825,0.973983739837398,1.00143266475645,1.00415512465374,1.00346620450607,1.00138504155125,1,1,1,1.0015600624025,1.01104972375691,1.00163132137031,0.959731543624161,0.940425531914894,0.960526315789474,1,1,1,0.722960151802656,1.0016339869281,1,1,1.00326264274062,1,0.972267536704731,1,0.682724252491694,0.959216965742251,1.00190476190476,1.00311526479751,0.960132890365448,1,0.960975609756098,1,1,1.00326264274062,1,1,1,1,1,1,1,1.00357142857143,0.957142857142857,1,1,0.961038961038961,0.951612903225806,0.962085308056872,1.00163132137031,0.961102106969206,0.767716535433071,1.0135593220339,0.961038961038961,1,1,0.957236842105263,1,1.00325732899023,0.959438377535101,0.959216965742251,0.933539412673879,0.960227272727273,1,1,1.00381679389313,1.01157024793388,0.933539412673879,1.00326264274062,0.961102106969206,0.936011904761905,0.262686567164179,0.0895522388059701,1,1,1,1,1,1,1,1.0032154340836,0.963358778625954,0.960720130932897,0.959798994974874,0.933539412673879,0.961165048543689,0.968,1,1,0.960591133004926]],"container":"<table class=\"display\">\n <thead>\n <tr>\n <th> <\/th>\n <th>Species<\/th>\n <th>SSpecies<\/th>\n <th>pident<\/th>\n <th>pcov<\/th>\n <\/tr>\n <\/thead>\n<\/table>","options":{"pageLength":10,"scrollX":true,"language":{"search":"Filter:"},"dom":"Bfrtip","buttons":["copy","csv","excel","pdf","print"],"columnDefs":[{"className":"dt-right","targets":[3,4]},{"orderable":false,"targets":0}],"order":[],"autoWidth":false,"orderClasses":false}},"evals":[],"jsHooks":[]}</script>
<div id="htmlwidget-ec834ad8d0198876005c" style="width:100%;height:auto;" class="datatables html-widget"></div>
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amstelodami","Guehomyces pullulans","Neosartorya fischeri","Penicillium aurantiogriseum","Penicillium bialowiezense","Penicillium brevicompactum","Penicillium chermesinum","Penicillium chrysogenum_F7M11","Penicillium commune","Penicillium crustosum","Penicillium dipodomyicola","Penicillium expansum","Penicillium gladioli","Penicillium nordicum","Penicillium olsonii","Penicillium palitans","Penicillium salamii","Penicillium verrucosum","Penicillium viridicatum","Rhodotorula mucilaginosa","Torulopsis candida","Yarrowia alimentaria","Yarrowia bubula","Yarrowia lipolytica","Yarrowia porcina","Candida aaseri","Candida apicola","Kazachstania saulgeensis","Saccharomyces bayanus","Saccharomyces pastorianus","Saccharomyces uvarum","Saturnispora diversa","Schizosaccharomyces japonicus","Candida carpophila","Hyphopichia pseudoburtonii","Kazachstania barnettii","Kazachstania bozae","Kazachstania bulderi","Kazachstania exigua","Kazachstania humilis","Kazachstania servazzii","Pichia norvegensis","Penicillium camemberti var. camemberti","Penicillium nalgiovense","Penicillium solitum","Aspergillus fumigatus","Cyberlindnera jadinii","Geotrichum candidum","Lichtheimia corymbifera","Mucor circinelloides","Mucor fuscus","Mucor lanceolatus","Mucor racemosus","Penicillium antarcticum","Penicillium chrysogenum_CBS","Penicillium roqueforti","Trichosporon asahii","Yarrowia deformans","Candida zeylanoides","Candida azyma","Candida metapsilosis","Candida vini","Cryptococcus neoformans","Cystobasidium slooffiae","Dekkera bruxellensis","Diutina rugosa","Hanseniaspora occidentalis","Hanseniaspora opuntiae","Hyphopichia burtonii","Meyerozyma caribbica","Mrakia frigida","Papiliotrema flavescens","Papiliotrema terrestris","Rhodotorula nothofagi","Schwanniomyces etchellsii","Starmerella bacillaris","Symmetrospora coprosmae","Trigonopsis vinaria","Candida glabrata","Kazachstania unispora","Kluyveromyces marxianus","Lodderomyces elongisporus","Meyerozyma guilliermondii","Millerozyma farinosa","Pichia fermentans","Pichia kudriavzevii","Pichia occidentalis","Rhodotorula mucilaginosa var. mucilaginosa","Debaryomyces hansenii","Aureobasidium pullulans","Candida intermedia","Clavispora lusitaniae","Zygosaccharomyces rouxii","Saccharomyces cerevisiae","Wickerhamomyces anomalus","Aciculoconidium aculeatum","Barnettozyma californica","Candida santamariae","Cyberlindnera mrakii","Diutina catenulata","Geotrichum klebahnii","Hanseniaspora valbyensis","Kluyveromyces dobzhanskii","Kluyveromyces lactis var. lactis","Kregervanrija fluxuum","Lachancea fermentati","Lachancea waltii","Naganishia globosa","Nakazawaea holstii","Rhodotorula diobovata","Starmerella lactis-condensi","Candida tropicalis","Lachancea kluyveri","Starmerella stellata","Candida sake","Rhodotorula glutinis","Sporobolomyces roseus","Citeromyces matritensis","Cystobasidium minutum","Filobasidium magnum","Filobasidium magnum","Hanseniaspora guilliermondii","Hanseniaspora osmophila","Hanseniaspora uvarum","Hanseniaspora vineae","Lachancea thermotolerans","Metschnikowia pulcherrima","Metschnikowia reukaufii","Naganishia albida","Papiliotrema laurentii","Pichia kluyveri","Pichia terricola","Rhodotorula babjevae","Saccharomycodes ludwigii","Zygotorulaspora florentina","Candida parapsilosis","Torulaspora delbrueckii","Pichia membranifaciens"],["Aspergillus oryzae RIB40","Aspergillus sclerotiorum","Cladosporium allicinum","Cladosporium cladosporioides","Cladosporium sphaerospermum UM 843","Aspergillus cristatus","Mrakia blollopis","Aspergillus fumigatus Af293","Penicillium griseofulvum","Penicillium brevicompactum","Penicillium brevicompactum","Penicillium subrubescens","Penicillium nalgiovense","Penicillium griseofulvum","Penicillium griseofulvum","Penicillium griseofulvum","Penicillium griseofulvum","Penicillium griseofulvum","Penicillium nalgiovense","Penicillium brevicompactum","Penicillium griseofulvum","Penicillium brevicompactum","Penicillium nalgiovense","Penicillium griseofulvum","Alloscardovia sp.","Scheffersomyces shehatae","Yarrowia lipolytica","Yarrowia lipolytica","Yarrowia lipolytica","Yarrowia lipolytica","Yamadazyma sp.","Candida apicola","Kazachstania exigua","Saccharomyces eubayanus","Saccharomyces eubayanus","Saccharomyces uvarum MCYC 623","Saturnispora diversa","Schizosaccharomyces japonicus yFS275","Meyerozyma guilliermondii","Hyphopichia burtonii","Kazachstania barnettii","Kazachstania exigua","Kazachstania barnettii","Kazachstania exigua","Kazachstania barnettii","Kazachstania servazzii","Pichia norvegensis","Penicillium griseofulvum","Penicillium nalgiovense","Penicillium subrubescens","Aspergillus fumigatus Af293","Cyberlindnera jadinii NBRC 0988","Galactomyces candidus","Lichtheimia corymbifera","Lichtheimia ramosa B5399","Mucor irregularis","Mucor racemosus","Mucor racemosus","Penicillium arizonense","Penicillium nalgiovense","Penicillium griseofulvum","Tetradesmus obliquus","Yarrowia lipolytica","Talaromyces marneffei ATCC 18224","Wickerhamiella azyma","Candida orthopsilosis Co 90-125","Kregervanrija fluxuum","Cryptococcus neoformans var. grubii","Cystobasidium laryngis","Brettanomyces bruxellensis","Phaeoacremonium minimum UCRPA7","Hanseniaspora osmophila","Hanseniaspora opuntiae","Dastarcus helophoroides","Meyerozyma guilliermondii ATCC 6260","Mrakia blollopis","Prorocentrum micans","Prorocentrum micans","Leucosporidium creatinivorum","Schwanniomyces etchellsii","Starmerella bacillaris","Cystobasidium laryngis","Trigonopsis vinaria","","Kazachstania unispora","Kluyveromyces marxianus","Lodderomyces elongisporus NRRL YB-4239","Meyerozyma guilliermondii ATCC 6260","Millerozyma farinosa CBS 7064 (Pichia farinosa CBS 7064)","Pichia fermentans","Pichia kudriavzevii","Pichia occidentalis","Alloscardovia sp.","Talaromyces marneffei ATCC 18224","Aureobasidium sp.","","Clavispora lusitaniae","Zygosaccharomyces rouxii","Saccharomyces cerevisiae (baker's yeast)","Wickerhamomyces anomalus","Aciculoconidium aculeatum","Barnettozyma californica","Talaromyces marneffei ATCC 18224","Cyberlindnera mrakii","Spathaspora passalidarum NRRL Y-27907","Galactomyces candidus","Hanseniaspora valbyensis","Kluyveromyces wickerhamii UCD 54-210","Kluyveromyces lactis","Kregervanrija fluxuum","Lachancea fermentati","Lachancea waltii NCYC 2644","unknown species","Nakazawaea holstii","Rhodotorula graminis WP1","Starmerella bombicola","Candida tropicalis","Naumovozyma castellii NRRL Y-12630","Starmerella bacillaris","Scheffersomyces shehatae","Rhodotorula graminis WP1","Alloscardovia sp.","Citeromyces matritensis","Cystobasidium laryngis","Mrakia frigida","Mrakia frigida","Hanseniaspora opuntiae","Hanseniaspora osmophila","Hanseniaspora opuntiae","Hanseniaspora osmophila","Lachancea thermotolerans CBS 6340","Metschnikowia fructicola 277","Metschnikowia reukaufii","unknown species","Papiliotrema laurentii RY1","Pichia kluyveri","Pichia terricola","Rhodotorula graminis WP1","Saccharomycodes ludwigii","Zygotorulaspora mrakii","Candida orthopsilosis Co 90-125","Torulaspora delbrueckii","Pichia membranifaciens"],[0.96769,0.98226,1,1,0.98684,0.99674,0.93344,0.99511,0.99837,0.98377,0.99838,0.9658,0.99837,0.99674,0.99674,1,0.99511,0.99511,0.99674,0.99188,0.99674,0.98379,0.99674,0.99837,1,0.93126,0.88909,0.90597,0.99818,0.9235,0.96341,0.99809,0.9949,1,1,1,0.99819,0.99684,0.99411,0.89672,1,0.99653,0.99491,1,0.97966,1,1,0.99674,1,0.99837,0.99854,0.99355,0.98543,0.95492,0.99714,0.92,0.9171,0.99308,0.9759,0.99837,0.99837,0.93302,0.93807,0.95928,1,0.99397,0.99829,0.99844,0.95639,0.99029,0.85827,0.94127,1,0.99824,0.99187,0.99533,0.96812,0.9689,0.88321,1,0.9981,0.90373,1,1,1,1,1,0.99512,0.99675,1,0.99835,1,1,0.99837,1,0.9911,1,1,1,0.99831,0.98093,1,0.96254,0.99831,0.90256,0.89967,1,0.98299,1,0.99828,1,0.99675,0.93171,1,0.99503,0.90138,1,1,0.92586,0.93301,0.99834,0.8748,1,0.95707,0.98295,0.98333,0.99675,0.99674,0.99187,0.98369,1,0.97601,0.9982,0.91186,0.99842,0.9983,0.99825,0.99834,1,0.95041,0.99184,1,0.99829],[1.00161812297735,1.00323624595469,1,1,1,1,1.0015503875969,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1.0016393442623,1.01851851851852,1.01841620626151,1.0018281535649,1.01104972375691,1,1,0.959216965742251,1,1,1,0.958333333333333,1,1,1.00734394124847,0.960848287112561,0.986301369863014,0.960848287112561,0.959216965742251,0.962479608482871,0.960975609756098,0.961352657004831,1,1,1,1.00073099415205,1,1.00182481751825,0.973983739837398,1.00143266475645,1.00415512465374,1.00346620450607,1.00138504155125,1,1,1,1.0015600624025,1.01104972375691,1.00163132137031,0.959731543624161,0.940425531914894,0.960526315789474,1,1,1,0.722960151802656,1.0016339869281,1,1,1.00326264274062,1,0.972267536704731,1,0.682724252491694,0.959216965742251,1.00190476190476,1.00311526479751,0.960132890365448,1,0.960975609756098,1,1,1.00326264274062,1,1,1,1,1,1,1,1.00357142857143,0.957142857142857,1,1,0.961038961038961,0.951612903225806,0.962085308056872,1.00163132137031,0.961102106969206,0.767716535433071,1.0135593220339,0.961038961038961,1,1,0.957236842105263,1,1.00325732899023,0.959438377535101,0.959216965742251,0.933539412673879,0.960227272727273,1,1,1.00381679389313,1.01157024793388,0.933539412673879,1.00326264274062,0.961102106969206,0.936011904761905,0.262686567164179,0.0895522388059701,1,1,1,1,1,1,1,1.0032154340836,0.963358778625954,0.960720130932897,0.959798994974874,0.933539412673879,0.961165048543689,0.968,1,1,0.960591133004926]],"container":"<table class=\"display\">\n <thead>\n <tr>\n <th> <\/th>\n <th>Species<\/th>\n <th>SSpecies<\/th>\n <th>pident<\/th>\n <th>pcov<\/th>\n <\/tr>\n <\/thead>\n<\/table>","options":{"pageLength":10,"scrollX":true,"language":{"search":"Filter:"},"dom":"Bfrtip","buttons":["copy","csv","excel","pdf","print"],"columnDefs":[{"className":"dt-right","targets":[3,4]},{"orderable":false,"targets":0}],"order":[],"autoWidth":false,"orderClasses":false}},"evals":[],"jsHooks":[]}</script>
<p>44 hits have the same Species.</p>
</div>
<div id="rpb2" class="section level2">
<h2>RPB2</h2>
<pre class="r"><code>infos &lt;- full_join(t_rpb2,ggd,by=&quot;Strain&quot;) %&gt;% filter(marker == &quot;RPB2&quot;) %&gt;% select(Species, SSpecies, pident, pcov)
infos %&gt;% datatable()</code></pre>
<div id="htmlwidget-81f6c165587d44d87f42" style="width:100%;height:auto;" class="datatables html-widget"></div>
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amstelodami","Guehomyces pullulans","Neosartorya fischeri","Penicillium aurantiogriseum","Penicillium bialowiezense","Penicillium brevicompactum","Penicillium chermesinum","Penicillium chrysogenum_F7M11","Penicillium commune","Penicillium crustosum","Penicillium dipodomyicola","Penicillium expansum","Penicillium gladioli","Penicillium nordicum","Penicillium olsonii","Penicillium palitans","Penicillium salamii","Penicillium verrucosum","Penicillium viridicatum","Rhodotorula mucilaginosa","Torulopsis candida","Yarrowia alimentaria","Yarrowia bubula","Yarrowia lipolytica","Yarrowia porcina","Candida aaseri","Candida apicola","Kazachstania saulgeensis","Saccharomyces bayanus","Saccharomyces pastorianus","Saccharomyces uvarum","Saturnispora diversa","Schizosaccharomyces japonicus","Candida carpophila","Hyphopichia pseudoburtonii","Kazachstania barnettii","Kazachstania bozae","Kazachstania bulderi","Kazachstania exigua","Kazachstania humilis","Kazachstania servazzii","Pichia norvegensis","Penicillium camemberti var. camemberti","Penicillium nalgiovense","Penicillium solitum","Aspergillus fumigatus","Cyberlindnera jadinii","Geotrichum candidum","Lichtheimia corymbifera","Mucor circinelloides","Mucor fuscus","Mucor lanceolatus","Mucor racemosus","Penicillium antarcticum","Penicillium chrysogenum_CBS","Penicillium roqueforti","Trichosporon asahii","Yarrowia deformans","Candida zeylanoides","Candida metapsilosis","Candida vini","Cryptococcus neoformans","Cystobasidium slooffiae","Dekkera bruxellensis","Diutina rugosa","Hanseniaspora occidentalis","Hanseniaspora opuntiae","Hyphopichia burtonii","Meyerozyma caribbica","Mrakia frigida","Papiliotrema flavescens","Papiliotrema terrestris","Rhodotorula nothofagi","Schwanniomyces etchellsii","Starmerella bacillaris","Symmetrospora coprosmae","Trigonopsis vinaria","Candida glabrata","Kazachstania unispora","Kluyveromyces marxianus","Lodderomyces elongisporus","Meyerozyma guilliermondii","Millerozyma farinosa","Pichia fermentans","Pichia kudriavzevii","Pichia occidentalis","Rhodotorula mucilaginosa var. mucilaginosa","Debaryomyces hansenii","Aureobasidium pullulans","Candida intermedia","Clavispora lusitaniae","Zygosaccharomyces rouxii","Saccharomyces cerevisiae","Wickerhamomyces anomalus","Aciculoconidium aculeatum","Barnettozyma californica","Candida santamariae","Cyberlindnera mrakii","Diutina catenulata","Geotrichum klebahnii","Hanseniaspora valbyensis","Kluyveromyces dobzhanskii","Kluyveromyces lactis var. lactis","Kregervanrija fluxuum","Lachancea fermentati","Naganishia globosa","Nakazawaea holstii","Rhodotorula diobovata","Starmerella lactis-condensi","Candida tropicalis","Lachancea kluyveri","Starmerella stellata","Candida sake","Sporobolomyces roseus","Citeromyces matritensis","Cystobasidium minutum","Filobasidium magnum","Hanseniaspora guilliermondii","Hanseniaspora osmophila","Hanseniaspora uvarum","Hanseniaspora vineae","Lachancea thermotolerans","Metschnikowia pulcherrima","Metschnikowia reukaufii","Naganishia albida","Papiliotrema laurentii","Pichia kluyveri","Pichia terricola","Rhodotorula babjevae","Saccharomycodes ludwigii","Zygotorulaspora florentina","Candida parapsilosis","Torulaspora delbrueckii","Pichia membranifaciens"],["Aspergillus candidus","Aspergillus steynii","Hortaea acidophila","Cladosporium cladosporioides","Cladosporium sphaerospermum","Aspergillus montevidensis","Guehomyces pullulans","Aspergillus fischeri","Penicillium cellarum","Penicillium bialowiezense","Penicillium brevicompactum","Penicillium cvjetkovicii","Penicillium chrysogenum","Penicillium commune","Penicillium crustosum","Penicillium dipodomyicola","Penicillium expansum","Penicillium gladioli","Penicillium nordicum","Penicillium olsonii","Penicillium expansum","Penicillium salamorum","Penicillium nordicum","Penicillium viridicatum","Rhodotorula mucilaginosa","Candida saitoana","Fusarium neocosmosporiellum","Cladosporium sphaerospermum","Yarrowia lipolytica","Yarrowia lipolytica","Kriegeria eriophori","[Candida] apicola","Kazachstania sp.","Saccharomyces bayanus","Saccharomyces bayanus","Saccharomyces eubayanus","Saturnispora diversa","Schizosaccharomyces japonicus","Candida carpophila","Hyphopichia pseudoburtonii","Kazachstania barnettii","Kazachstania exigua","Saccharomyces bulderi","Kazachstania exigua","Candida humilis","Saccharomyces servazzii","Pichia norvegensis","Penicillium commune","Penicillium nalgiovense","Penicillium solitum","Aspergillus fumigatus","Cyberlindnera jadinii","Galactomyces candidum","Lichtheimia ramosa","Mucor circinelloides","Mucor hiemalis","Mucor hiemalis","Mucor hiemalis","Penicillium antarcticum","Penicillium chrysogenum","Penicillium roqueforti","Trichosporon asahii","Yarrowia galli","Candida zeylanoides","Candida parapsilosis","Kregervanrija fluxuum","Cryptococcus neoformans","Cystobasidium slooffiae","Dekkera bruxellensis","Candida rugosa","Saccharomyces servazzii","Hanseniaspora valbyensis","Hyphopichia burtonii","Pichia caribbica","Mrakia nivalis","Cryptococcus flavescens","Bullera formosensis","Rhodotorula nothofagi","Schwanniomyces etchellsii","Starmerella bacillaris","Symmetrospora coprosmae","Heterosphaeria linariae","Candida glabrata","Kazachstania unispora","Kluyveromyces marxianus","Lodderomyces elongisporus","Meyerozyma guilliermondii","Millerozyma farinosa","Pichia fermentans","Pichia kudriavzevii","Pichia kudriavzevii","Rhodotorula mucilaginosa","Debaryomyces hansenii","Aureobasidium pullulans","Candida pseudointermedia","Clavispora lusitaniae","Zygosaccharomyces rouxii","Saccharomyces pastorianus","Pichia anomala","Aciculoconidium aculeatum","Candida tropicalis","[Candida] santamariae","Candida flosculorum","Candida lignicola","Geotrichum klebahnii","Hanseniaspora valbyensis","Kluyveromyces lactis","Kluyveromyces lactis","Kregervanrija fluxuum","Kluyveromyces marxianus","Cryptococcus saitoi","Nakazawaea holstii","Rhodotorula diobovata","Nakazawaea ishiwadae","Candida tropicalis","Lachancea kluyveri","Alectoria ochroleuca","Candida sake","Sporobolomyces roseus","Citeromyces matritensis","Cystobasidium minutum","Cryptococcus magnus","Candida fluviatilis","Metschnikowia agaves","Hanseniaspora valbyensis","Kazachstania unispora","Lachancea thermotolerans","Metschnikowia aff.","Candida magnifica","Cryptococcus albidus","Teunia sp.","[Candida] rugopelliculosa","Pichia norvegensis","Gunnera chilensis","Saccharomycodes ludwigii","Zygosaccharomyces florentinus","Candida parapsilosis","Torulaspora delbrueckii","Pichia membranifaciens"],[1,0.9987,0.9923,0.99863,0.97763,1,0.99736,1,0.99738,0.98056,1,0.99862,0.99478,1,0.99735,1,1,0.99586,1,0.99725,0.99868,1,0.99325,1,1,0.99707,0.93151,0.97237,1,0.89785,0.99868,1,1,1,0.99783,0.96201,1,1,0.94478,0.9985,1,0.9321,1,0.9772,1,1,1,0.99087,1,1,1,1,1,0.91146,1,0.87578,0.87299,0.89366,1,0.99478,1,1,0.9521,1,1,1,1,1,1,1,0.73293,0.81434,1,1,0.99604,1,0.75205,1,1,1,1,0.89744,1,1,1,1,1,1,0.99124,1,1,1,1,1,1,1,1,1,1,1,0.9186,1,0.80749,0.7601,1,1,0.87936,1,1,0.79361,1,1,1,0.99874,1,1,0.76235,1,1,1,1,1,0.75862,0.90476,0.84211,0.74252,1,1,0.98271,1,0.76146,0.90538,0.84541,0.82407,1,1,1,1,1],[1,1,1,0.969414893617021,0.988296488946684,1,1.00264200792602,1,1,0.974289580514208,1,0.955085865257596,1,1,0.990825688073395,0.915184678522572,1,0.960264900662252,1,1,1.00131926121372,0.931174089068826,1,1,1,0.984126984126984,0.0993197278911565,0.975609756097561,1,1,0.983116883116883,1,1,1,0.991397849462366,0.998644986449865,1,1,1,1.00150602409639,1,1.0020618556701,1,1,0.992378048780488,1,1,1,0.945098039215686,1,1,1,1,1,1,1.00089445438283,1,1.00089445438283,1,1,1,1,0.653194263363755,0.938666666666667,1,1,1,1,1,1,0.894165535956581,1.02160864345738,1,0.974424552429668,1,1,0.998632010943912,1,1,1,1,0.104138851802403,1,1,1,1,1,1,0.99304347826087,1,1,1,1,1,1,1,1,1,1,1,0.112125162972621,1,0.489528795811518,1.00392670157068,1,1,1,1,1,1.01899592944369,1,1,1,1,1,1,0.333676622039135,1,1,1,1,1,0.452581032412965,0.113513513513514,1.01183431952663,1.0026075619296,1,1,1,1,1.01504787961696,0.543859649122807,0.777221526908636,0.137055837563452,1,0.886024423337856,1,1,1]],"container":"<table class=\"display\">\n <thead>\n <tr>\n <th> <\/th>\n <th>Species<\/th>\n <th>SSpecies<\/th>\n <th>pident<\/th>\n <th>pcov<\/th>\n <\/tr>\n <\/thead>\n<\/table>","options":{"pageLength":10,"scrollX":true,"language":{"search":"Filter:"},"dom":"Bfrtip","buttons":["copy","csv","excel","pdf","print"],"columnDefs":[{"className":"dt-right","targets":[3,4]},{"orderable":false,"targets":0}],"order":[],"autoWidth":false,"orderClasses":false}},"evals":[],"jsHooks":[]}</script>