Update config files

R/app_config.R

+#' Access files in the current app
+#' 
+#' @param ... Character vector specifying directory and or file to
+#'     point to inside the current package.
+#' 
+#' @noRd
+app_sys <- function(...){
+  system.file(..., package = "affiliationExplorer")
+}
+
+
+#' Read App Config
+#' 
+#' @param value Value to retrieve from the config file. 
+#' @param config R_CONFIG_ACTIVE value. 
+#' @param use_parent Logical, scan the parent directory for config file.
+#'     
+#' @importFrom config get
+#' 
+#' @noRd
+get_golem_config <- function(
+  value, 
+  config = Sys.getenv("R_CONFIG_ACTIVE", "default"), 
+  use_parent = TRUE
+){
+  config::get(
+    value = value, 
+    config = config, 
+    # Modify this if your config file is somewhere else:
+    file = app_sys("golem-config.yml"), 
+    use_parent = use_parent
+  )
+}
+

dev/02_dev.R

@@ -26,6 +26,9 @@ usethis::use_package("Biostrings")
 ## Github dependencies
 usethis::use_dev_package("phyloseq.extended")
 
+## Check dependencies
+attachment::att_to_description()
+
 ## 2.3 Add tests
 
 usethis::use_test( "app" )

inst/golem-config.yml

+default:
+  golem_name: affiliationExplorer
+  golem_version: 0.0.0.9000
+  app_prod: no
+production:
+  app_prod: yes
+dev:
+  golem_wd: !expr here::here()