Commit 9939a3ca authored by mahendra-mariadassou's avatar mahendra-mariadassou
Browse files

Update dependencies

parent d061446a
Package: affiliationExplorer
Title: Resolve multiaffilations from FROGS
Version: 0.0.0.9000
Authors@R: c(
person('Sandra', 'Derozier', email = 'sandra.derozier@inrae.fr', role = c('cre', 'aut')),
person("Mahendra", "Mariadassou", role = "aut", email = "mahendra.mariadassou@inrae.fr",
comment = c(ORCID = "0000-0003-2986-354X"))
)
Description: Shiny app to help user choose one affilation among equally good ones.
Authors@R:
c(person(given = "Sandra",
family = "Derozier",
role = c("cre", "aut"),
email = "sandra.derozier@inrae.fr"),
person(given = "Mahendra",
family = "Mariadassou",
role = "aut",
email = "mahendra.mariadassou@inrae.fr",
comment = c(ORCID = "0000-0003-2986-354X")))
Description: Shiny app to help user choose one affilation among
equally good ones.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
biocViews:
RoxygenNote: 7.0.2
Imports:
shiny,
shinyjs,
golem,
processx,
attempt,
Biostrings,
config,
dplyr,
DT,
glue,
golem,
htmltools,
magrittr,
phyloseq,
dplyr,
phyloseq.extended (>= 0.1.1.0),
biomformat,
tidyr,
magrittr,
readr,
shiny,
shinycssloaders,
shinydashboard,
shinycssloaders
Remotes:
mahendra-mariadassou/phyloseq-extended@dev
shinyjs,
tibble,
tidyr
Suggests:
pkgload,
processx,
testthat
Remotes:
mahendra-mariadassou/phyloseq-extended@dev
biocViews:
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.0
......@@ -6,8 +6,10 @@ import(shiny)
import(shinycssloaders)
import(shinydashboard)
import(shinyjs)
importFrom(Biostrings,readDNAStringSet)
importFrom(DT,editData)
importFrom(DT,renderDT)
importFrom(config,get)
importFrom(dplyr,distinct)
importFrom(glue,glue)
importFrom(golem,with_golem_options)
......
......@@ -16,12 +16,12 @@ usethis::use_pipe()
usethis::use_package("shinydashboard")
usethis::use_package("shinycssloaders")
#usethis::use_package("ReporteRs")
usethis::use_package( "phyloseq" ) # To call each time you need a new package
usethis::use_package( "biomformat" )
usethis::use_package( "dplyr" )
usethis::use_package( "tidyr" )
usethis::use_package("shinyjs")
usethis::use_package("Biostrings")
## Github dependencies
usethis::use_dev_package("phyloseq.extended")
......
# Set options here
options(golem.app.prod = FALSE) # TRUE = production mode, FALSE = development mode
options(shiny.maxRequestSize = 80 * 1024^2)
options(shiny.maxRequestSize = 100 * 1024^2)
options(spinner.color="#0275D8", spinner.color.background="#ffffff", spinner.size=2)
# Detach all loaded packages and clean your environment
......@@ -11,4 +11,4 @@ golem::detach_all_attached()
golem::document_and_reload()
# Run the application
affiliationExplorer::run_app()
\ No newline at end of file
affiliationExplorer::run_app()
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