Add various dependencies

DESCRIPTION

@@ -10,6 +10,8 @@ Description: Shiny app to help user choose one affilation among equally good one
 License: MIT + file LICENSE
 Encoding: UTF-8
 LazyData: true
+biocViews:
+RoxygenNote: 6.1.0
 Imports: 
     shiny,
     golem,
@@ -17,7 +19,14 @@ Imports:
     attempt,
     DT,
     glue,
-    htmltools
-RoxygenNote: 6.1.0
+    htmltools,
+    phyloseq,
+    dplyr,
+    phyloseq.extended (>= 0.1.0.9000),
+    biomformat,
+    tidyr,
+    magrittr
+Remotes: 
+    mahendra-mariadassou/phyloseq-extended@dev    
 Suggests: 
     testthat

R/utils-pipe.R

+#' Pipe operator
+#'
+#' See \code{magrittr::\link[magrittr:pipe]{\%>\%}} for details.
+#'
+#' @name %>%
+#' @rdname pipe
+#' @keywords internal
+#' @export
+#' @importFrom magrittr %>%
+#' @usage lhs \%>\% rhs
+NULL

dev/02_dev.R

@@ -12,7 +12,16 @@ golem::add_module( name = "my_other_module" ) # Name of the module
 
 ## 2.2 Add dependencies
 
-usethis::use_package( "thinkr" ) # To call each time you need a new package
+## Allow pipe use
+usethis::use_pipe()
+
+usethis::use_package( "phyloseq" ) # To call each time you need a new package
+usethis::use_package( "biomformat" )
+usethis::use_package( "dplyr" )
+usethis::use_package( "tidyr" )
+
+## Github dependencies
+usethis::use_dev_package("phyloseq.extended")
 
 ## 2.3 Add tests