MetExplore2 issueshttps://forgemia.inra.fr/metexplore/metexplore2/-/issues2019-05-14T18:33:19+02:00https://forgemia.inra.fr/metexplore/metexplore2/-/issues/2085Mettre une limite dans le nombre de données dans le mapping2019-05-14T18:33:19+02:00Ludovic CottretMettre une limite dans le nombre de données dans le mappingEssai avec 38000 lignes et 10 colonnes : ca tue le site. C'est pas etonnant mais on ne devrait meme pas avoir le droit d'essayer.Essai avec 38000 lignes et 10 colonnes : ca tue le site. C'est pas etonnant mais on ne devrait meme pas avoir le droit d'essayer.Florence VinsonFlorence Vinsonhttps://forgemia.inra.fr/metexplore/metexplore2/-/issues/2081Pb import SBML2019-04-11T15:44:08+02:00Nathalie Poupinnathalie.poupin@inrae.frPb import SBMLQuand on lance un import SBML, l'import s'affiche en gris dans la liste des jobs avec "in the data center cluster queue" mais rien ne se passe ensuite ...Quand on lance un import SBML, l'import s'affiche en gris dans la liste des jobs avec "in the data center cluster queue" mais rien ne se passe ensuite ...Ludovic CottretLudovic Cottrethttps://forgemia.inra.fr/metexplore/metexplore2/-/issues/2080Import of proteins in KEGG2019-04-11T15:47:13+02:00Fabien JourdanImport of proteins in KEGGWe don't import protein names from KEGG networks so it is not easy to map them...
We should adapt the importWe don't import protein names from KEGG networks so it is not easy to map them...
We should adapt the importFuture DevelopmentsLudovic CottretLudovic Cottrethttps://forgemia.inra.fr/metexplore/metexplore2/-/issues/2070import mapping et changement de réseau2019-03-22T08:34:43+01:00Maxime Chazalvielimport mapping et changement de réseauQuand on change de réseau et que l'on a importé un mapping sur le réseau initial, le mapping est gardé sur le nouveau réseauQuand on change de réseau et que l'on a importé un mapping sur le réseau initial, le mapping est gardé sur le nouveau réseauFlorence VinsonFlorence Vinsonhttps://forgemia.inra.fr/metexplore/metexplore2/-/issues/2053quand enzyme pas associée à gene, le GPR viz est faux2019-03-22T08:34:40+01:00Maxime Chazalvielquand enzyme pas associée à gene, le GPR viz est fauxHotfixLudovic CottretLudovic Cottrethttps://forgemia.inra.fr/metexplore/metexplore2/-/issues/2052ajout pubmed à reaction ne fonctionne pas2019-03-22T08:34:39+01:00Maxime Chazalvielajout pubmed à reaction ne fonctionne pasQuand on ajoute une ref, et qu'on edite ensuite la reaction, le mois et l'annee se rajoutent à la date et ça coince.Quand on ajoute une ref, et qu'on edite ensuite la reaction, le mois et l'annee se rajoutent à la date et ça coince.HotfixLudovic CottretLudovic Cottrethttps://forgemia.inra.fr/metexplore/metexplore2/-/issues/2049La modification de métabolite dans un projet de fonctionne pas2019-03-22T08:34:38+01:00Maxime ChazalvielLa modification de métabolite dans un projet de fonctionne pasJe voulais modifier le chebi (18320) du 1,4-dithiothreitol dans recon3D réseau 5527 dans le projet SpecMet (je t'y ai donné accès).
Ça écrase les Ids de la molécule et ça ne les remplace pas.
Pas d'erreur en console mais dans le PHP.
...Je voulais modifier le chebi (18320) du 1,4-dithiothreitol dans recon3D réseau 5527 dans le projet SpecMet (je t'y ai donné accès).
Ça écrase les Ids de la molécule et ça ne les remplace pas.
Pas d'erreur en console mais dans le PHP.
VM-METEXPLORE-TEST
error.log
[Tue Dec 11 08:32:15.106152 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: date(): It is not safe to rely on the system's timezone settings. You are *required* to use the date.timezone setting or the date_default_timezone_set() function. In case you used any of those methods and you are still getting this warning, you most likely misspelled the timezone identifier. We selected the timezone 'UTC' for now, but please set date.timezone to select your timezone. in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 10, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/
[Tue Dec 11 08:32:15.106338 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: mkdir(): No such file or directory in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 19, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/
[Tue Dec 11 08:32:15.106406 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: fopen(/var/www/datalog//5527/datalog_5527.sql): failed to open stream: No such file or directory in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 26, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/
[Tue Dec 11 08:32:15.106421 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: fwrite() expects parameter 1 to be resource, boolean given in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 28, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/
[Tue Dec 11 08:32:15.106433 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: fclose() expects parameter 1 to be resource, boolean given in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 30, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/
[Tue Dec 11 08:32:15.108192 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: date(): It is not safe to rely on the system's timezone settings. You are *required* to use the date.timezone setting or the date_default_timezone_set() function. In case you used any of those methods and you are still getting this warning, you most likely misspelled the timezone identifier. We selected the timezone 'UTC' for now, but please set date.timezone to select your timezone. in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 10, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/
[Tue Dec 11 08:32:15.108247 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: mkdir(): No such file or directory in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 19, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/
[Tue Dec 11 08:32:15.108286 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: fopen(/var/www/datalog//5527/datalog_5527.sql): failed to open stream: No such file or directory in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 26, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/
[Tue Dec 11 08:32:15.108298 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: fwrite() expects parameter 1 to be resource, boolean given in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 28, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/
[Tue Dec 11 08:32:15.108309 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: fclose() expects parameter 1 to be resource, boolean given in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 30, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/
[Tue Dec 11 08:32:15.108530 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: date(): It is not safe to rely on the system's timezone settings. You are *required* to use the date.timezone setting or the date_default_timezone_set() function. In case you used any of those methods and you are still getting this warning, you most likely misspelled the timezone identifier. We selected the timezone 'UTC' for now, but please set date.timezone to select your timezone. in /var/www/metexplore-master/resources/src/php/userAndProject/addHistoryItem.php on line 778, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/
[Tue Dec 11 08:32:15.108562 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: date(): It is not safe to rely on the system's timezone settings. You are *required* to use the date.timezone setting or the date_default_timezone_set() function. In case you used any of those methods and you are still getting this warning, you most likely misspelled the timezone identifier. We selected the timezone 'UTC' for now, but please set date.timezone to select your timezone. in /var/www/metexplore-master/resources/src/php/userAndProject/addHistoryItem.php on line 783, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/
[Tue Dec 11 08:32:15.108623 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: mkdir(): Permission denied in /var/www/metexplore-master/resources/src/php/userAndProject/addHistoryItem.php on line 801, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/
[Tue Dec 11 08:32:15.111964 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: fopen(/var/www/datalog//History/5527/metabolites/history_9937334.tsv): failed to open stream: No such file or directory in /var/www/metexplore-master/resources/src/php/userAndProject/addHistoryItem.php on line 712, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/
[Tue Dec 11 08:32:15.111989 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: fwrite() expects parameter 1 to be resource, boolean given in /var/www/metexplore-master/resources/src/php/userAndProject/addHistoryItem.php on line 713, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/
[Tue Dec 11 08:32:15.112001 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: fwrite() expects parameter 1 to be resource, boolean given in /var/www/metexplore-master/resources/src/php/userAndProject/addHistoryItem.php on line 714, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/
[Tue Dec 11 08:32:15.112012 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: fclose() expects parameter 1 to be resource, boolean given in /var/www/metexplore-master/resources/src/php/userAndProject/addHistoryItem.php on line 715, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/
[Tue Dec 11 08:32:15.112033 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: date(): It is not safe to rely on the system's timezone settings. You are *required* to use the date.timezone setting or the date_default_timezone_set() function. In case you used any of those methods and you are still getting this warning, you most likely misspelled the timezone identifier. We selected the timezone 'UTC' for now, but please set date.timezone to select your timezone. in /var/www/metexplore-master/resources/src/php/userAndProject/addHistoryItem.php on line 720, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/
[Tue Dec 11 08:32:15.114023 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: date(): It is not safe to rely on the system's timezone settings. You are *required* to use the date.timezone setting or the date_default_timezone_set() function. In case you used any of those methods and you are still getting this warning, you most likely misspelled the timezone identifier. We selected the timezone 'UTC' for now, but please set date.timezone to select your timezone. in /var/www/metexplore-master/resources/src/php/userAndProject/addHistoryItem.php on line 727, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/
[Tue Dec 11 08:32:15.118028 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Notice: Undefined variable: qty in /var/www/metexplore-master/resources/src/php/modifNetwork/UpdateMetabolite.php on line 72, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/
[Tue Dec 11 08:32:15.119733 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: date(): It is not safe to rely on the system's timezone settings. You are *required* to use the date.timezone setting or the date_default_timezone_set() function. In case you used any of those methods and you are still getting this warning, you most likely misspelled the timezone identifier. We selected the timezone 'UTC' for now, but please set date.timezone to select your timezone. in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 10, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/
[Tue Dec 11 08:32:15.119799 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: mkdir(): No such file or directory in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 19, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/
[Tue Dec 11 08:32:15.119848 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: fopen(/var/www/datalog//5527/datalog_5527.sql): failed to open stream: No such file or directory in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 26, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/
[Tue Dec 11 08:32:15.119865 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: fwrite() expects parameter 1 to be resource, boolean given in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 28, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/
[Tue Dec 11 08:32:15.119880 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: fclose() expects parameter 1 to be resource, boolean given in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 30, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/
[Tue Dec 11 08:32:15.121558 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: date(): It is not safe to rely on the system's timezone settings. You are *required* to use the date.timezone setting or the date_default_timezone_set() function. In case you used any of those methods and you are still getting this warning, you most likely misspelled the timezone identifier. We selected the timezone 'UTC' for now, but please set date.timezone to select your timezone. in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 10, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/
[Tue Dec 11 08:32:15.121616 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: mkdir(): No such file or directory in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 19, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/
[Tue Dec 11 08:32:15.121664 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: fopen(/var/www/datalog//5527/datalog_5527.sql): failed to open stream: No such file or directory in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 26, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/
[Tue Dec 11 08:32:15.121681 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: fwrite() expects parameter 1 to be resource, boolean given in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 28, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/
[Tue Dec 11 08:32:15.121695 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: fclose() expects parameter 1 to be resource, boolean given in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 30, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/
[Tue Dec 11 08:32:15.123297 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: date(): It is not safe to rely on the system's timezone settings. You are *required* to use the date.timezone setting or the date_default_timezone_set() function. In case you used any of those methods and you are still getting this warning, you most likely misspelled the timezone identifier. We selected the timezone 'UTC' for now, but please set date.timezone to select your timezone. in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 10, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/
[Tue Dec 11 08:32:15.123349 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: mkdir(): No such file or directory in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 19, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/
[Tue Dec 11 08:32:15.123407 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: fopen(/var/www/datalog//5527/datalog_5527.sql): failed to open stream: No such file or directory in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 26, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/
[Tue Dec 11 08:32:15.123423 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: fwrite() expects parameter 1 to be resource, boolean given in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 28, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/
[Tue Dec 11 08:32:15.123437 2018] [:error] [pid 10973] [client 147.99.104.40:49782] PHP Warning: fclose() expects parameter 1 to be resource, boolean given in /var/www/metexplore-master/resources/src/php/LogBioSourceUpdate.php on line 30, referer: https://vm-metexplore-test.toulouse.inra.fr/metexplore-master/
VM-METEXPLORE-PROD
ssl_error-log
[Tue Dec 11 08:35:14.358634 2018] [:error] [pid 368] [client 147.99.104.40:50103] SELECT DISTINCT idReaction, reversible FROM ReactionInBioSource WHERE ReactionInBioSource.idBioSource=5527, referer: https://metexplore.toulouse.inra.fr/metexplore2/
[Tue Dec 11 08:35:16.466681 2018] [:error] [pid 1809] [client 130.223.194.144:49560] PHP Notice: Use of undefined constant localhost - assumed 'localhost' in /var/www/joomla/tmp/sourcerer_php_e43a0d0151e478e19d0f9f57245cca66 on line 10
[Tue Dec 11 08:35:19.396824 2018] [:error] [pid 1878] [client 130.223.194.144:49561] PHP Notice: Use of undefined constant localhost - assumed 'localhost' in /var/www/joomla/tmp/sourcerer_php_e43a0d0151e478e19d0f9f57245cca66 on line 10, referer: http://www.metexplore.fr/
[Tue Dec 11 08:35:23.392356 2018] [:error] [pid 3163] [client 130.223.194.144:49567] SELECT DISTINCT idReaction, reversible FROM ReactionInBioSource WHERE ReactionInBioSource.idBioSource=3223, referer: https://metexplore.toulouse.inra.fr/metexplore2/
[Tue Dec 11 08:35:28.601474 2018] [:error] [pid 23300] [client 107.178.194.39:36530] PHP Notice: Use of undefined constant localhost - assumed 'localhost' in /var/www/joomla/tmp/sourcerer_php_e43a0d0151e478e19d0f9f57245cca66 on line 10
[Tue Dec 11 08:35:40.021161 2018] [:error] [pid 3163] [client 130.223.194.144:49579] SELECT DISTINCT idReaction, reversible FROM ReactionInBioSource WHERE ReactionInBioSource.idBioSource=3223, referer: https://metexplore.toulouse.inra.fr/metexplore2/
[Tue Dec 11 08:35:57.249758 2018] [:error] [pid 3205] [client 147.99.104.40:50175] PHP Notice: Undefined variable: qty in /var/www/metexplore2.18.13/resources/src/php/modifNetwork/UpdateMetabolite.php on line 72, referer: https://metexplore.toulouse.inra.fr/metexplore2/HotfixLudovic CottretLudovic Cottrethttps://forgemia.inra.fr/metexplore/metexplore2/-/issues/2046Error while trying to retrieve the reaction's pathways MySQL identifiers.2019-03-22T08:34:38+01:00Maxime ChazalvielError while trying to retrieve the reaction's pathways MySQL identifiers.Essai d'import du modele de Medicago : les pathways viennent de BioCyc et contiennent plein de caracteres bizzarres comme & etc...Essai d'import du modele de Medicago : les pathways viennent de BioCyc et contiennent plein de caracteres bizzarres comme & etc...HotfixLudovic CottretLudovic Cottrethttps://forgemia.inra.fr/metexplore/metexplore2/-/issues/2026Ne plus exporter les enrichissements en SBML2019-03-22T08:34:33+01:00Maxime ChazalvielNe plus exporter les enrichissements en SBMLHotfixLudovic CottretLudovic Cottrethttps://forgemia.inra.fr/metexplore/metexplore2/-/issues/2019TODO List all dans User Panel ne se met pas à jour2019-03-22T08:34:32+01:00Maxime ChazalvielTODO List all dans User Panel ne se met pas à jourSi on ajoute un TODO à un autre utilisateur, la TODO list All ne se met pas à jour, meme quand on appuie sur Refresh.Si on ajoute un TODO à un autre utilisateur, la TODO list All ne se met pas à jour, meme quand on appuie sur Refresh.HotfixLudovic CottretLudovic Cottrethttps://forgemia.inra.fr/metexplore/metexplore2/-/issues/2018TODO List loading dans le vide2019-03-22T08:34:31+01:00Maxime ChazalvielTODO List loading dans le videCf https://vm-metexplore-dev.toulouse.inra.fr/dokuwiki/doku.php?id=metexplore:tests:project:project_funtionalities
Quand on edite un projet, apres avoir sauvé, la TODO list tente de se rafraichir, mais dans le vide...
Version : 2.14.12...Cf https://vm-metexplore-dev.toulouse.inra.fr/dokuwiki/doku.php?id=metexplore:tests:project:project_funtionalities
Quand on edite un projet, apres avoir sauvé, la TODO list tente de se rafraichir, mais dans le vide...
Version : 2.14.12 mais existe aussi dans la version prod actuelleHotfixLudovic CottretLudovic Cottrethttps://forgemia.inra.fr/metexplore/metexplore2/-/issues/2017SBML IO : Pathway avec identifier et nom vide2019-03-22T08:34:31+01:00Maxime ChazalvielSBML IO : Pathway avec identifier et nom videExport Biosource Homo sapiens (Strain: global network) (Source: Publication, Version: Recon2.2) (4311) puis import.
On retrouve une pathway avec des identifiants vides.Export Biosource Homo sapiens (Strain: global network) (Source: Publication, Version: Recon2.2) (4311) puis import.
On retrouve une pathway avec des identifiants vides.HotfixLudovic CottretLudovic Cottrethttps://forgemia.inra.fr/metexplore/metexplore2/-/issues/19912 * Extra_organism dans Escherichia coli iaF1260 flux22019-03-22T08:34:25+01:00Maxime Chazalviel2 * Extra_organism dans Escherichia coli iaF1260 flux2Regarder ce qu'il y a dans les 2 et corriger.Regarder ce qu'il y a dans les 2 et corriger.Ludovic CottretLudovic Cottrethttps://forgemia.inra.fr/metexplore/metexplore2/-/issues/1979Les données sont écrasées quand on modifie les IDs externes des métabolites2019-03-22T08:34:22+01:00Maxime ChazalvielLes données sont écrasées quand on modifie les IDs externes des métabolites1 - J'ai sélectionné un métabolite
2 - Affiché les infos et vu qu'on avait seulement un KEGG
3 - Cliqué sur Edit
4 - Entré le Chebi
5 - Enrichit à partir du Chebi
6 - Sauvé
Et on ne retrouve plus que le Chebi et le smiles associé et ...1 - J'ai sélectionné un métabolite
2 - Affiché les infos et vu qu'on avait seulement un KEGG
3 - Cliqué sur Edit
4 - Entré le Chebi
5 - Enrichit à partir du Chebi
6 - Sauvé
Et on ne retrouve plus que le Chebi et le smiles associé et plus l'id KEGG.HotfixLudovic CottretLudovic Cottrethttps://forgemia.inra.fr/metexplore/metexplore2/-/issues/1971nom du modele plus apparent2019-03-22T08:34:20+01:00Maxime Chazalvielnom du modele plus apparentDepuis la réorganisation des BioSources (très bien), on ne voit plus le nom des modeles comme iaf1260, etc dans les comboboxes... Pour les biosources publiques, il faudrait l'intégrer dans la version....Depuis la réorganisation des BioSources (très bien), on ne voit plus le nom des modeles comme iaf1260, etc dans les comboboxes... Pour les biosources publiques, il faudrait l'intégrer dans la version....Ludovic CottretLudovic Cottrethttps://forgemia.inra.fr/metexplore/metexplore2/-/issues/1964Import SBML : pubmed id2019-03-22T08:34:18+01:00Maxime ChazalvielImport SBML : pubmed idSi connexion pubmed down, mettre quand meme le pubmed id dans la databaseSi connexion pubmed down, mettre quand meme le pubmed id dans la databaseHotfixLudovic CottretLudovic Cottrethttps://forgemia.inra.fr/metexplore/metexplore2/-/issues/1963On doit cliquer sur Approve à chaque visite de MetExplore...2019-08-22T17:04:10+02:00Maxime ChazalvielOn doit cliquer sur Approve à chaque visite de MetExplore...HotfixMaxime ChazalvielMaxime Chazalvielhttps://forgemia.inra.fr/metexplore/metexplore2/-/issues/1960Evidence code for GPRs2019-03-22T08:34:18+01:00Maxime ChazalvielEvidence code for GPRsBonne idée du reviewer 3:
Originally BiGG has introduced evidence codes for GPR annotation. These latter disappeared from the BiGG web site. Evidence codes are clearly of great value. However I wonder why MetExplore is not considering ht...Bonne idée du reviewer 3:
Originally BiGG has introduced evidence codes for GPR annotation. These latter disappeared from the BiGG web site. Evidence codes are clearly of great value. However I wonder why MetExplore is not considering http://www.geneontology.org/page/guide-go-evidence-codes as an alternative.Ludovic CottretLudovic Cottrethttps://forgemia.inra.fr/metexplore/metexplore2/-/issues/1956La charge et la formule des composés sont écrites à deux reprise lors d'un...2019-03-22T08:34:17+01:00Maxime ChazalvielLa charge et la formule des composés sont écrites à deux reprise lors d'un export SBML L3V1 :en utilisant le package fbc, et avec l'ancienne façon de faire de COBRA (dans les notes).en utilisant le package fbc, et avec l'ancienne façon de faire de COBRA (dans les notes).Ludovic CottretLudovic Cottrethttps://forgemia.inra.fr/metexplore/metexplore2/-/issues/1949Background Creation Statistics2019-03-22T08:34:15+01:00Maxime ChazalvielBackground Creation StatisticsDemande de Baudoin
select BioSource > click Pathways tab > click Cration Statistics
button > hover a bin: the background doesn't work on FirefoxDemande de Baudoin
select BioSource > click Pathways tab > click Cration Statistics
button > hover a bin: the background doesn't work on FirefoxHotfixLudovic CottretLudovic Cottret