met4j merge requestshttps://forgemia.inra.fr/metexplore/met4j/-/merge_requests2022-10-13T18:15:22+02:00https://forgemia.inra.fr/metexplore/met4j/-/merge_requests/21Draft: Feature/reaction side cpds2022-10-13T18:15:22+02:00Louison FresnaisDraft: Feature/reaction side cpdsObjectives of this MR:
- Compute Reaction Specific Side compounds
- Overload the getReactionGraph method to take into account reaction-wise cofactors
Work in progress:
- Optimisation/Architecture
- Unit tests
The side compound identifi...Objectives of this MR:
- Compute Reaction Specific Side compounds
- Overload the getReactionGraph method to take into account reaction-wise cofactors
Work in progress:
- Optimisation/Architecture
- Unit tests
The side compound identification strategy is up to discussion because to be able to also consider compounds implicated in spurious edges I had to turn the problem upside down:
1: For each reaction, identify the compounds implicated in Main edges as Main compounds
2: Consider all other compounds of this reaction as Side compounds (All compounds - Main compounds)Louison FresnaisLouison Fresnais