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It bears the same idea, while being theoretically more accurate, and is less correlated with the degree measure already present

[ToolBox] Advanced compound graph

See merge request !10

Expand Toolbox with SBML scrapping app

See merge request !9

handling mutliple compartments in side compound scan

See merge request !8

This is aimed at improving side compound detection when using models with compartments. The traditional filter by degree often removes H2O and other cofactors from cytosol, but those compounds usually remains in compartments with fewer biochemical activities, thus with lower overall degree for their constituents

This is aimed at improving side compound detection when using models with compartments. The traditional filter by degree often removes H2O and other cofactors from cytosol, but those compounds usually remains in compartments with fewer  biochemical activities, thus with lower overall degree for their constituents

The kegg2bionetwork tests required web connection to check DTD validity.
refactor Kegg2BioNetwork to split the DocumentFactory creation
Creates a Mock to return a DocumentFactory without DTD checking for tests