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metexplore
met4j
Commits
b3df96bd
Commit
b3df96bd
authored
May 12, 2022
by
lcottret
Browse files
Finish tag 0.10
parents
767a1234
781cbe56
Changes
11
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.gitlab-ci.yml
View file @
b3df96bd
...
...
@@ -74,7 +74,7 @@ buildSingularity:
-
singularity push --docker-username "${CI_REGISTRY_USER}" --docker-password "${CI_REGISTRY_PASSWORD}" met4j-toolbox.sif oras://"$CI_REGISTRY_IMAGE"/met4j-singularity:"$CI_COMMIT_TAG"
rules
:
-
if
:
$CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH
when
:
always
when
:
manual
-
if
:
$CI_COMMIT_BRANCH != $CI_DEFAULT_BRANCH
when
:
manual
...
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@@ -87,7 +87,7 @@ buildDockerProdGitlab:
-
docker push "$CI_REGISTRY/metexplore/met4j/met4j-docker:latest"
rules
:
-
if
:
$CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH
when
:
always
when
:
manual
-
if
:
$CI_COMMIT_BRANCH != $CI_DEFAULT_BRANCH
when
:
manual
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@@ -100,7 +100,7 @@ buildDockerProdDockerhub:
-
docker push "$DOCKERHUB_IMAGE:latest"
rules
:
-
if
:
$CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH
when
:
always
when
:
manual
-
if
:
$CI_COMMIT_BRANCH != $CI_DEFAULT_BRANCH
when
:
manual
...
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CHANGELOG.md
View file @
b3df96bd
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@@ -4,6 +4,18 @@ All notable changes to this project will be documented in this file.
The format is based on
[
Keep a Changelog
](
https://keepachangelog.com/en/1.0.0/
)
,
and this project adheres to
[
Semantic Versioning
](
https://semver.org/spec/v2.0.0.html
)
.
## 0.10.0
### Features
[met4j-toolbox] New app: networkAnalysis.CompoundNet: Advanced compound graph building
[met4j-toolbox] New app: attributes.ExtractPathways: SBML sub network creation from a list of pathways
[met4j-toolbox] New app: attributes.ExtractSbmlAnnot: Extract sbml annotations
[met4j-toolbox] App improvements: networkAnalysis.SideCompoundsScan: Handle multiple compartments
## 0.9.1
### Fixed
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coverage/pom.xml
View file @
b3df96bd
...
...
@@ -44,7 +44,7 @@
<parent>
<groupId>
fr.inrae.toulouse.metexplore
</groupId>
<artifactId>
met4j
</artifactId>
<version>
0.
9.1
-SNAPSHOT
</version>
<version>
0.
10.0
-SNAPSHOT
</version>
<relativePath>
../pom.xml
</relativePath>
</parent>
...
...
met4j-chemUtils/pom.xml
View file @
b3df96bd
...
...
@@ -5,7 +5,7 @@
<parent>
<groupId>
fr.inrae.toulouse.metexplore
</groupId>
<artifactId>
met4j
</artifactId>
<version>
0.
9.1
-SNAPSHOT
</version>
<version>
0.
10.0
-SNAPSHOT
</version>
</parent>
<properties>
...
...
@@ -35,7 +35,7 @@
<dependency>
<groupId>
fr.inrae.toulouse.metexplore
</groupId>
<artifactId>
met4j-core
</artifactId>
<version>
0.
9.1
-SNAPSHOT
</version>
<version>
0.
10.0
-SNAPSHOT
</version>
</dependency>
<!-- https://mvnrepository.com/artifact/org.mockito/mockito-all -->
<dependency>
...
...
met4j-core/pom.xml
View file @
b3df96bd
...
...
@@ -5,7 +5,7 @@
<parent>
<groupId>
fr.inrae.toulouse.metexplore
</groupId>
<artifactId>
met4j
</artifactId>
<version>
0.
9.1
-SNAPSHOT
</version>
<version>
0.
10.0
-SNAPSHOT
</version>
</parent>
<scm>
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...
met4j-graph/pom.xml
View file @
b3df96bd
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...
@@ -5,7 +5,7 @@
<parent>
<groupId>
fr.inrae.toulouse.metexplore
</groupId>
<artifactId>
met4j
</artifactId>
<version>
0.
9.1
-SNAPSHOT
</version>
<version>
0.
10.0
-SNAPSHOT
</version>
</parent>
<artifactId>
met4j-graph
</artifactId>
...
...
@@ -40,7 +40,7 @@
<dependency>
<groupId>
fr.inrae.toulouse.metexplore
</groupId>
<artifactId>
met4j-core
</artifactId>
<version>
0.
9.1
-SNAPSHOT
</version>
<version>
0.
10.0
-SNAPSHOT
</version>
</dependency>
<dependency>
<groupId>
org.apache.commons
</groupId>
...
...
@@ -50,12 +50,12 @@
<dependency>
<groupId>
fr.inrae.toulouse.metexplore
</groupId>
<artifactId>
met4j-mathUtils
</artifactId>
<version>
0.
9.1
-SNAPSHOT
</version>
<version>
0.
10.0
-SNAPSHOT
</version>
</dependency>
<dependency>
<groupId>
fr.inrae.toulouse.metexplore
</groupId>
<artifactId>
met4j-chemUtils
</artifactId>
<version>
0.
9.1
-SNAPSHOT
</version>
<version>
0.
10.0
-SNAPSHOT
</version>
</dependency>
</dependencies>
...
...
met4j-io/pom.xml
View file @
b3df96bd
...
...
@@ -6,7 +6,7 @@
<parent>
<groupId>
fr.inrae.toulouse.metexplore
</groupId>
<artifactId>
met4j
</artifactId>
<version>
0.
9.1
-SNAPSHOT
</version>
<version>
0.
10.0
-SNAPSHOT
</version>
</parent>
<artifactId>
met4j-io
</artifactId>
...
...
@@ -25,7 +25,7 @@
<dependency>
<groupId>
fr.inrae.toulouse.metexplore
</groupId>
<artifactId>
met4j-core
</artifactId>
<version>
0.
9.1
-SNAPSHOT
</version>
<version>
0.
10.0
-SNAPSHOT
</version>
</dependency>
<dependency>
<groupId>
org.sbml.jsbml
</groupId>
...
...
met4j-mapping/pom.xml
View file @
b3df96bd
...
...
@@ -4,7 +4,7 @@
<parent>
<artifactId>
met4j
</artifactId>
<groupId>
fr.inrae.toulouse.metexplore
</groupId>
<version>
0.
9.1
-SNAPSHOT
</version>
<version>
0.
10.0
-SNAPSHOT
</version>
</parent>
<modelVersion>
4.0.0
</modelVersion>
...
...
@@ -19,7 +19,7 @@
<dependency>
<groupId>
fr.inrae.toulouse.metexplore
</groupId>
<artifactId>
met4j-core
</artifactId>
<version>
0.
9.1
-SNAPSHOT
</version>
<version>
0.
10.0
-SNAPSHOT
</version>
</dependency>
<dependency>
<groupId>
junit
</groupId>
...
...
met4j-mathUtils/pom.xml
View file @
b3df96bd
...
...
@@ -5,7 +5,7 @@
<parent>
<groupId>
fr.inrae.toulouse.metexplore
</groupId>
<artifactId>
met4j
</artifactId>
<version>
0.
9.1
-SNAPSHOT
</version>
<version>
0.
10.0
-SNAPSHOT
</version>
</parent>
...
...
met4j-toolbox/pom.xml
View file @
b3df96bd
...
...
@@ -5,7 +5,7 @@
<parent>
<groupId>
fr.inrae.toulouse.metexplore
</groupId>
<artifactId>
met4j
</artifactId>
<version>
0.
9.1
-SNAPSHOT
</version>
<version>
0.
10.0
-SNAPSHOT
</version>
</parent>
<artifactId>
met4j-toolbox
</artifactId>
...
...
@@ -33,32 +33,32 @@
<dependency>
<groupId>
fr.inrae.toulouse.metexplore
</groupId>
<artifactId>
met4j-chemUtils
</artifactId>
<version>
0.
9.1
-SNAPSHOT
</version>
<version>
0.
10.0
-SNAPSHOT
</version>
</dependency>
<dependency>
<groupId>
fr.inrae.toulouse.metexplore
</groupId>
<artifactId>
met4j-io
</artifactId>
<version>
0.
9.1
-SNAPSHOT
</version>
<version>
0.
10.0
-SNAPSHOT
</version>
</dependency>
<dependency>
<groupId>
fr.inrae.toulouse.metexplore
</groupId>
<artifactId>
met4j-core
</artifactId>
<version>
0.
9.1
-SNAPSHOT
</version>
<version>
0.
10.0
-SNAPSHOT
</version>
</dependency>
<dependency>
<groupId>
fr.inrae.toulouse.metexplore
</groupId>
<artifactId>
met4j-mathUtils
</artifactId>
<version>
0.
9.1
-SNAPSHOT
</version>
<version>
0.
10.0
-SNAPSHOT
</version>
</dependency>
<dependency>
<groupId>
fr.inrae.toulouse.metexplore
</groupId>
<artifactId>
met4j-graph
</artifactId>
<version>
0.
9.1
-SNAPSHOT
</version>
<version>
0.
10.0
-SNAPSHOT
</version>
</dependency>
<dependency>
<groupId>
fr.inrae.toulouse.metexplore
</groupId>
<artifactId>
met4j-mapping
</artifactId>
<version>
0.
9.1
-SNAPSHOT
</version>
<version>
0.
10.0
-SNAPSHOT
</version>
</dependency>
<!-- https://mvnrepository.com/artifact/com.googlecode.json-simple/json-simple -->
<dependency>
...
...
pom.xml
View file @
b3df96bd
...
...
@@ -4,7 +4,7 @@
<groupId>
fr.inrae.toulouse.metexplore
</groupId>
<artifactId>
met4j
</artifactId>
<version>
0.
9.1
-SNAPSHOT
</version>
<version>
0.
10.0
-SNAPSHOT
</version>
<packaging>
pom
</packaging>
<name>
met4j
</name>
...
...
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