Skip to content
GitLab
Projects
Groups
Snippets
/
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
metexplore
met4j
Commits
1eb01ec5
Commit
1eb01ec5
authored
Apr 25, 2022
by
Ludovic Cottret
Browse files
Docker
parent
adea908b
Changes
3
Hide whitespace changes
Inline
Side-by-side
.gitlab-ci.yml
View file @
1eb01ec5
...
...
@@ -4,7 +4,13 @@ stages:
-
build
-
test
-
deploy
-
singularity
-
build-containers
.template_docker
:
stage
:
build-containers
image
:
docker:latest
services
:
-
docker:dind
variables
:
MAVEN_CLI_OPTS
:
"
-s
.m2/settings.xml
--batch-mode"
...
...
@@ -59,12 +65,45 @@ deployCentral:
-
master
buildSingularity
:
stage
:
singularity
stage
:
build-containers
image
:
name
:
quay.io/singularity/singularity:v3.4.0
entrypoint
:
[
"
"
]
script
:
-
singularity build met4j-toolbox.sif met4j.singularity
-
singularity push --docker-username "${CI_REGISTRY_USER}" --docker-password "${CI_REGISTRY_PASSWORD}" met4j-toolbox.sif oras://"$CI_REGISTRY_IMAGE"/met4j-singularity:"$CI_COMMIT_TAG"
when
:
manual
rules
:
-
if
:
$CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH
when
:
always
-
if
:
$CI_COMMIT_BRANCH != $CI_DEFAULT_BRANCH
when
:
manual
buildDockerProdGitlab
:
extends
:
.template_docker
before_script
:
-
docker login -u $CI_REGISTRY_USER -p $CI_REGISTRY_PASSWORD $CI_REGISTRY
script
:
-
docker build -t "$CI_REGISTRY/metexplore/met4j/met4j-docker:latest" .
-
docker push "$CI_REGISTRY/metexplore/met4j/met4j-docker:latest"
rules
:
-
if
:
$CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH
when
:
always
-
if
:
$CI_COMMIT_BRANCH != $CI_DEFAULT_BRANCH
when
:
manual
buildDockerProdDockerhub
:
extends
:
.template_docker
before_script
:
-
docker login -u "$DOCKERHUB_USER" -p "$DOCKERHUB_PASSWORD" $DOCKERHUB_REGISTRY
script
:
-
docker build --pull -t "$DOCKERHUB_IMAGE:latest" .
-
docker push "$DOCKERHUB_IMAGE:latest"
rules
:
-
if
:
$CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH
when
:
always
-
if
:
$CI_COMMIT_BRANCH != $CI_DEFAULT_BRANCH
when
:
manual
Dockerfile
0 → 100644
View file @
1eb01ec5
FROM
debian:stable-slim
RUN
export
DEBIAN_FRONTEND
=
noninteractive
RUN
apt-get update
\
&&
apt-get upgrade
-y
\
&&
apt-get
install
-y
openjdk-11-jre git maven
\
&&
apt-get clean
\
&&
apt-get purge
RUN
mkdir
-p
/opt
&&
cd
/opt
\
&&
git clone https://forgemia.inra.fr/metexplore/met4j.git
\
&&
cd
met4j
\
&&
mvn
install
\
&&
cd
met4j-toolbox
\
&&
mvn package
RUN
mkdir
-p
/opt/bin
\
&&
cd
/opt/met4j/met4j-toolbox
\
&&
cp
target/met4j
*
.jar /opt/bin/met4j.jar
\
&&
cd
/opt
\
&&
rm
-rf
met4j ~/.m2
\
&&
apt-get remove
-y
git
&&
apt-get autoremove
-y
COPY
./docker_files/met4j.sh /opt/bin
ENTRYPOINT
["/opt/bin/met4j.sh"]
docker_files/met4j.sh
0 → 100644
View file @
1eb01ec5
#!bin/bash
#
# Copyright INRAE (2022)
#
# contact-metexplore@inrae.fr
#
# This software is a computer program whose purpose is to [describe
# functionalities and technical features of your software].
#
# This software is governed by the CeCILL license under French law and
# abiding by the rules of distribution of free software. You can use,
# modify and/ or redistribute the software under the terms of the CeCILL
# license as circulated by CEA, CNRS and INRIA at the following URL
# "https://cecill.info/licences/Licence_CeCILL_V2.1-en.html".
#
# As a counterpart to the access to the source code and rights to copy,
# modify and redistribute granted by the license, users are provided only
# with a limited warranty and the software's author, the holder of the
# economic rights, and the successive licensors have only limited
# liability.
#
# In this respect, the user's attention is drawn to the risks associated
# with loading, using, modifying and/or developing or reproducing the
# software by the user in light of its specific status of free software,
# that may mean that it is complicated to manipulate, and that also
# therefore means that it is reserved for developers and experienced
# professionals having in-depth computer knowledge. Users are therefore
# encouraged to load and test the software's suitability as regards their
# requirements in conditions enabling the security of their systems and/or
# data to be ensured and, more generally, to use and operate it in the
# same conditions as regards security.
#
# The fact that you are presently reading this means that you have had
# knowledge of the CeCILL license and that you accept its terms.
#
#
path_jar
=
/opt/bin/met4j.jar
# path_jar=../met4j-toolbox/target/met4j-toolbox-0.9.1-SNAPSHOT.jar
if
[
$#
-lt
1
]
then
echo
"display Help"
exec
java
-jar
$path_jar
else
echo
"Lauch met4j-toolbox"
exec
java
-Dlog4j
.configuration
=
-cp
$path_jar
fr.inrae.toulouse.metexplore.met4j_toolbox.
"
$@
"
fi
\ No newline at end of file
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment