Docker

.gitlab-ci.yml

@@ -4,7 +4,13 @@ stages:
   - build
   - test
   - deploy
-  - singularity
+  - build-containers
+
+.template_docker:
+  stage: build-containers
+  image: docker:latest
+  services:
+    - docker:dind
 
 variables:
   MAVEN_CLI_OPTS: "-s .m2/settings.xml --batch-mode"
@@ -59,12 +65,45 @@ deployCentral:
     - master
 
 buildSingularity:
-  stage: singularity
+  stage: build-containers
   image:
     name: quay.io/singularity/singularity:v3.4.0
     entrypoint: [ "" ]
   script:
     - singularity build met4j-toolbox.sif met4j.singularity
     - singularity push --docker-username "${CI_REGISTRY_USER}" --docker-password "${CI_REGISTRY_PASSWORD}" met4j-toolbox.sif oras://"$CI_REGISTRY_IMAGE"/met4j-singularity:"$CI_COMMIT_TAG"
-  when: manual
+  rules:
+    - if: $CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH
+      when: always
+    - if: $CI_COMMIT_BRANCH != $CI_DEFAULT_BRANCH
+      when: manual
+
+buildDockerProdGitlab:
+  extends: .template_docker
+  before_script:
+    - docker login -u $CI_REGISTRY_USER -p $CI_REGISTRY_PASSWORD $CI_REGISTRY
+  script:
+    - docker build -t "$CI_REGISTRY/metexplore/met4j/met4j-docker:latest" .
+    - docker push "$CI_REGISTRY/metexplore/met4j/met4j-docker:latest"
+  rules:
+    - if: $CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH
+      when: always
+    - if: $CI_COMMIT_BRANCH != $CI_DEFAULT_BRANCH
+      when: manual
+
+buildDockerProdDockerhub:
+  extends: .template_docker
+  before_script:
+    - docker login -u "$DOCKERHUB_USER" -p "$DOCKERHUB_PASSWORD" $DOCKERHUB_REGISTRY
+  script:
+    - docker build --pull -t "$DOCKERHUB_IMAGE:latest" .
+    - docker push "$DOCKERHUB_IMAGE:latest"
+  rules:
+    - if: $CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH
+      when: always
+    - if: $CI_COMMIT_BRANCH != $CI_DEFAULT_BRANCH
+      when: manual
+
+
+
 

Dockerfile

+FROM debian:stable-slim
+
+RUN export DEBIAN_FRONTEND=noninteractive
+
+RUN apt-get update \
+&& apt-get upgrade -y \
+&& apt-get install -y openjdk-11-jre git maven \
+&& apt-get clean \
+&& apt-get purge
+
+RUN mkdir -p /opt && cd /opt \
+&& git clone https://forgemia.inra.fr/metexplore/met4j.git \
+&& cd met4j \
+&& mvn install \
+&& cd met4j-toolbox \
+&& mvn package
+
+RUN mkdir -p /opt/bin \
+&& cd /opt/met4j/met4j-toolbox \
+&& cp target/met4j*.jar /opt/bin/met4j.jar \
+&& cd /opt \
+&& rm -rf met4j ~/.m2  \
+&& apt-get remove -y git && apt-get autoremove -y
+
+COPY ./docker_files/met4j.sh /opt/bin
+
+ENTRYPOINT ["/opt/bin/met4j.sh"]
+

docker_files/met4j.sh

+#!bin/bash
+#
+# Copyright INRAE (2022)
+#
+# contact-metexplore@inrae.fr
+#
+# This software is a computer program whose purpose is to [describe
+# functionalities and technical features of your software].
+#
+# This software is governed by the CeCILL license under French law and
+# abiding by the rules of distribution of free software.  You can  use,
+# modify and/ or redistribute the software under the terms of the CeCILL
+# license as circulated by CEA, CNRS and INRIA at the following URL
+# "https://cecill.info/licences/Licence_CeCILL_V2.1-en.html".
+#
+# As a counterpart to the access to the source code and  rights to copy,
+# modify and redistribute granted by the license, users are provided only
+# with a limited warranty  and the software's author,  the holder of the
+# economic rights,  and the successive licensors  have only  limited
+# liability.
+#
+# In this respect, the user's attention is drawn to the risks associated
+# with loading,  using,  modifying and/or developing or reproducing the
+# software by the user in light of its specific status of free software,
+# that may mean  that it is complicated to manipulate,  and  that  also
+# therefore means  that it is reserved for developers  and  experienced
+# professionals having in-depth computer knowledge. Users are therefore
+# encouraged to load and test the software's suitability as regards their
+# requirements in conditions enabling the security of their systems and/or
+# data to be ensured and,  more generally, to use and operate it in the
+# same conditions as regards security.
+#
+# The fact that you are presently reading this means that you have had
+# knowledge of the CeCILL license and that you accept its terms.
+#
+#
+
+
+path_jar=/opt/bin/met4j.jar
+# path_jar=../met4j-toolbox/target/met4j-toolbox-0.9.1-SNAPSHOT.jar
+
+if [ $# -lt 1 ]
+    then
+        echo "display Help"
+        exec java -jar $path_jar
+    else
+        echo "Lauch met4j-toolbox"
+	      exec java -Dlog4j.configuration= -cp $path_jar fr.inrae.toulouse.metexplore.met4j_toolbox."$@"
+fi
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