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metexplore
MetExploreViz
Commits
5e9f7a17
Commit
5e9f7a17
authored
Feb 10, 2020
by
maxchaza
Browse files
Merge branch 'hotfix/initNetwork'
parents
2e2c6914
2c2be1f0
Changes
20
Hide whitespace changes
Inline
Side-by-side
app.json
View file @
5e9f7a17
...
...
@@ -7,7 +7,7 @@
/**
*
The
version
of
the
application.
*/
"version"
:
"3.0.
8
"
,
"version"
:
"3.0.
9
"
,
/**
*
The
relative
path
to
the
application's
markup
file
(html
,
jsp
,
asp
,
etc.).
...
...
app/view/button/buttonImportMapping/ButtonImportMappingController.js
View file @
5e9f7a17
...
...
@@ -22,7 +22,7 @@ Ext.define('metExploreViz.view.button.buttonImportMapping.ButtonImportMappingCon
view
.
on
({
reloadMapping
:
function
(){
view
.
reset
();
me
.
reset
Condition
();
},
jsonmapping
:
function
(
mappingJSON
){
me
.
addConditions
(
mappingJSON
);
...
...
@@ -110,11 +110,23 @@ Ext.define('metExploreViz.view.button.buttonImportMapping.ButtonImportMappingCon
}
else
newConditions
.
push
(
mapping
.
getName
());
newConditions
.
filter
(
function
(
cond
){
return
!
(
cond
.
includes
(
"
PathwayEnrichment
"
)
||
cond
.
includes
(
"
PathwayCoverage
"
))
})
.
forEach
(
function
(
value
)
{
conditionStore
.
add
({
name
:
value
,
type
:
'
int
'
,
biologicalType
:
biologicalType
});
});
.
forEach
(
function
(
value
)
{
if
(
conditionStore
.
find
(
"
name
"
,
value
)
===-
1
)
conditionStore
.
add
({
name
:
value
,
type
:
'
int
'
,
biologicalType
:
biologicalType
});
});
},
/*****************************************************
* Fill condition store store
* @param mapping : Mapping object
*/
resetCondition
:
function
()
{
var
conditionStore
=
Ext
.
getStore
(
"
conditionStore
"
);
conditionStore
.
loadData
([],
false
);
}
});
app/view/form/aStyleForm/AStyleFormController.js
View file @
5e9f7a17
...
...
@@ -461,8 +461,8 @@ Ext.define('metExploreViz.view.form.aStyleForm.AStyleFormController', {
val
=
parseFloat
(
text
);
metExploreD3
.
GraphStyleEdition
.
setCollectionStyle
(
view
.
target
,
view
.
attrType
,
view
.
attrName
,
view
.
biologicalType
,
val
);
styleToUse
[
view
.
access
]
=
val
;
view
.
default
=
parseInt
(
val
)
;
styleToUse
[
view
.
access
]
=
val
;
view
.
default
=
val
;
});
},
scope
:
me
...
...
app/view/form/allStylesForm/AllStylesFormController.js
View file @
5e9f7a17
...
...
@@ -15,6 +15,11 @@ Ext.define('metExploreViz.view.form.allStylesForm.AllStylesFormController', {
viewModel
=
me
.
getViewModel
(),
view
=
me
.
getView
();
view
.
on
({
refreshAllStyles
:
this
.
reloadAllScales
,
scope
:
me
});
view
.
query
(
"
allStylesByTypeForm
"
).
forEach
(
function
(
allStylesByTypeForm
)
{
allStylesByTypeForm
.
lookupReference
(
'
saveAllScales
'
)
.
on
({
...
...
@@ -167,7 +172,6 @@ Ext.define('metExploreViz.view.form.allStylesForm.AllStylesFormController', {
}
}
console
.
log
(
'
--------------------------------------------------
'
);
});
view
.
query
(
"
allStylesByTypeForm
"
)
...
...
@@ -182,5 +186,65 @@ Ext.define('metExploreViz.view.form.allStylesForm.AllStylesFormController', {
});
},
reloadAllScales
:
function
()
{
var
me
=
this
,
viewModel
=
me
.
getViewModel
(),
view
=
me
.
getView
();
var
allScales
=
[];
view
.
query
(
"
allStylesByTypeForm
"
).
forEach
(
function
(
allStylesByTypeForm
)
{
var
partOfAllScales
=
allStylesByTypeForm
.
query
(
"
aStyleForm
"
)
.
forEach
(
function
(
scale
)
{
var
form
=
Ext
.
getCmp
(
scale
.
biologicalType
+
"
StyleForm
"
);
if
(
form
){
var
theStyleForm
=
form
.
query
(
"
aStyleForm
"
).
find
(
function
(
aStyleForm
)
{
return
aStyleForm
.
title
===
scale
.
title
;});
if
(
theStyleForm
){
var
selectConditionForm
=
theStyleForm
.
lookupReference
(
'
selectConditionForm
'
);
var
selectCondition
=
selectConditionForm
.
lookupReference
(
'
selectCondition
'
);
var
selectConditionType
=
selectConditionForm
.
lookupReference
(
'
selectConditionType
'
);
var
dataType
=
selectConditionType
.
getValue
();
var
selectedCondition
=
selectCondition
.
getValue
();
if
(
scale
.
scaleRange
){
if
(
dataType
===
"
Continuous
"
&&
selectedCondition
!==
null
){
selectConditionForm
.
getController
().
map
(
true
,
true
,
theStyleForm
);
}
}
if
(
scale
.
valueDiscreteMappings
){
if
(
dataType
===
"
Discrete
"
&&
selectedCondition
!==
null
){
selectConditionForm
.
getController
().
map
(
true
,
true
,
theStyleForm
);
}
}
if
(
scale
.
valueAsSelectionMappings
){
if
(
dataType
===
"
As selection
"
&&
selectedCondition
!==
null
){
selectConditionForm
.
getController
().
map
(
true
,
true
,
theStyleForm
);
}
}
if
(
scale
.
valueAliasMappings
){
if
(
dataType
===
"
Alias
"
&&
selectedCondition
!==
null
){
selectConditionForm
.
getController
().
map
(
true
,
true
,
theStyleForm
);
}
}
}
}
});
});
/*
view.query("allStylesByTypeForm")
.forEach(function (allStylesByTypeForm) {
allStylesByTypeForm.query("aStyleForm")
.forEach(function (aStyleForm) {
if (aStyleForm.scaleRange)
aStyleForm.getController().updateContinuousCaption();
})
});
*/
}
});
\ No newline at end of file
app/view/form/captionForm/CaptionFormController.js
View file @
5e9f7a17
...
...
@@ -478,13 +478,11 @@ Ext.define('metExploreViz.view.form.captionForm.CaptionFormController', {
}
var
anim
=
session
.
isAnimated
(
"
viz
"
);
if
(
anim
==
'
true
'
)
{
if
(
anim
)
{
var
session
=
_metExploreViz
.
getSessionById
(
'
viz
'
);
var
force
=
session
.
getForce
();
if
(
metExploreD3
.
GraphNetwork
.
animation
)
{
force
.
alpha
(
1
).
restart
();
}
force
.
alpha
(
force
.
alpha
()).
restart
();
}
}
catch
(
e
)
{
...
...
@@ -493,13 +491,11 @@ Ext.define('metExploreViz.view.form.captionForm.CaptionFormController', {
metExploreD3
.
hideMask
(
myMask
);
var
anim
=
session
.
isAnimated
(
"
viz
"
);
if
(
anim
==
'
true
'
)
{
if
(
anim
==
=
true
)
{
var
session
=
_metExploreViz
.
getSessionById
(
'
viz
'
);
var
force
=
session
.
getForce
();
if
(
metExploreD3
.
GraphNetwork
.
animation
)
{
force
.
alpha
(
1
).
restart
();
}
force
.
alpha
(
force
.
alpha
()).
restart
();
}
throw
e
;
}
...
...
app/view/form/continuousNumberMappingEditor/ContinuousNumberMappingEditorController.js
View file @
5e9f7a17
...
...
@@ -51,10 +51,6 @@ Ext.define('metExploreViz.view.form.continuousNumberMappingEditor.ContinuousNumb
view
.
lookupReference
(
'
textfieldValue
'
).
on
({
focusleave
:
function
(
that
){
console
.
log
(
me
);
console
.
log
(
view
);
var
value
=
parseFloat
(
that
.
getRawValue
());
if
(
value
===
"
< min
"
||
value
===
"
> max
"
)
...
...
app/view/form/linkStyleForm/LinkStyleForm.js
View file @
5e9f7a17
...
...
@@ -43,56 +43,58 @@ Ext.define('metExploreViz.view.form.linkStyleForm.LinkStyleForm', {
"
default
"
:
1
,
"
min
"
:
0
,
"
max
"
:
1
},
}
// ,
// {
// "type": "text",
// "attr": "text",
// "title": "Label"
// },
{
"
type
"
:
"
color
"
,
"
biologicalType
"
:
"
link
"
,
"
target
"
:
[
"
text.link
"
],
"
attrType
"
:
"
style
"
,
"
access
"
:
"
fontColor
"
,
"
attr
"
:
"
fill
"
,
"
title
"
:
"
Label color
"
,
"
min
"
:
"
#ff0000
"
,
"
max
"
:
"
#00ffff
"
,
"
default
"
:
"
#000000
"
},
{
"
type
"
:
"
int
"
,
"
target
"
:
[
"
text.link
"
],
"
attrType
"
:
"
style
"
,
"
attr
"
:
"
font-size
"
,
"
access
"
:
"
fontSize
"
,
"
biologicalType
"
:
"
link
"
,
"
title
"
:
"
Label font size
"
,
"
min
"
:
1
,
"
max
"
:
200
,
"
default
"
:
20
},
{
"
type
"
:
"
int
"
,
"
target
"
:
[
"
text.link
"
],
"
attrType
"
:
"
style
"
,
"
attr
"
:
"
font-weight
"
,
"
access
"
:
"
fontWeight
"
,
"
biologicalType
"
:
"
link
"
,
"
title
"
:
"
Label font weight
"
,
"
min
"
:
100
,
"
max
"
:
1000
,
"
default
"
:
500
},
{
"
type
"
:
"
float
"
,
"
target
"
:
[
"
text.link
"
],
"
attrType
"
:
"
style
"
,
"
access
"
:
"
labelOpacity
"
,
"
attr
"
:
"
opacity
"
,
"
title
"
:
"
Label transparency
"
,
"
min
"
:
0.0
,
"
biologicalType
"
:
"
link
"
,
"
max
"
:
1.0
,
"
default
"
:
1.0
}]
// {
// "type": "color",
// "biologicalType":"link",
// "target": ["text.link"],
// "attrType": "style",
// "access":"fontColor",
// "attr": "fill",
// "title": "Label color",
// "min": "#ff0000",
// "max": "#00ffff",
// "default": "#000000"
// }, {
// "type": "int",
// "target": ["text.link"],
// "attrType": "style",
// "attr": "font-size",
// "access":"fontSize",
// "biologicalType":"link",
// "title": "Label font size",
// "min": 1,
// "max": 200,
// "default": 20
// }, {
// "type": "int",
// "target": ["text.link"],
// "attrType": "style",
// "attr": "font-weight",
// "access": "fontWeight",
// "biologicalType":"link",
// "title": "Label font weight",
// "min": 100,
// "max": 1000,
// "default": 500
// }, {
// "type": "float",
// "target": ["text.link"],
// "attrType": "style",
// "access":"labelOpacity",
// "attr": "opacity",
// "title": "Label transparency",
// "min": 0.0,
// "biologicalType":"link",
// "max": 1.0,
// "default": 1.0
// }
]
}
});
app/view/form/selectConditionForm/SelectConditionFormController.js
View file @
5e9f7a17
...
...
@@ -544,7 +544,8 @@ Ext.define('metExploreViz.view.form.selectConditionForm.SelectConditionFormContr
* @param fluxType : string, one or two arrows for fluxes
*/
graphMapping
:
function
(
dataType
,
conditionName
,
parentAStyleForm
)
{
var
session
=
_metExploreViz
.
getSessionById
(
'
viz
'
);
var
session
=
_metExploreViz
.
getSessionById
(
'
viz
'
);
if
(
dataType
===
"
Continuous
"
){
metExploreD3
.
GraphMapping
.
graphMappingContinuousData
(
conditionName
,
parentAStyleForm
);
...
...
@@ -566,6 +567,8 @@ Ext.define('metExploreViz.view.form.selectConditionForm.SelectConditionFormContr
metExploreD3
.
GraphMapping
.
graphMappingDiscreteData
(
conditionName
,
parentAStyleForm
);
}
if
(
dataType
===
"
As selection
"
){
session
.
setMappingDataType
(
dataType
);
metExploreD3
.
GraphMapping
.
graphMappingAsSelectionData
(
conditionName
,
parentAStyleForm
);
...
...
@@ -597,7 +600,8 @@ Ext.define('metExploreViz.view.form.selectConditionForm.SelectConditionFormContr
var
aStyleFormParent
=
me
.
getAStyleFormParent
();
if
(
type
!==
"
suggestion
"
){
networkVizSession
.
setMapped
(
selectedCondition
);
colorStore
=
aStyleFormParent
.
getController
().
getValueMappingsSet
(
networkVizSession
.
getMappingDataType
());
colorStore
=
aStyleFormParent
.
getController
().
getValueMappingsSet
(
dataType
);
}
else
{
...
...
app/view/form/selectMapping/SelectMappingController.js
View file @
5e9f7a17
...
...
@@ -16,6 +16,9 @@ Ext.define('metExploreViz.view.form.selectMapping.SelectMappingController', {
view
=
me
.
getView
();
view
.
on
({
reloadMapping
:
function
(){
me
.
resetMapping
();
},
jsonmapping
:
function
(
mappingJSON
){
me
.
initMapping
(
mappingJSON
);
},
...
...
@@ -23,6 +26,15 @@ Ext.define('metExploreViz.view.form.selectMapping.SelectMappingController', {
});
},
/*****************************************************
* Fill condition store store
* @param mapping : Mapping object
*/
resetMapping
:
function
()
{
var
store
=
Ext
.
getStore
(
"
mappingStore
"
);
store
.
loadData
([],
false
);
},
initMapping
:
function
(
mappingJSON
){
var
me
=
this
,
view
=
me
.
getView
();
...
...
@@ -36,7 +48,8 @@ Ext.define('metExploreViz.view.form.selectMapping.SelectMappingController', {
var
store
=
Ext
.
getStore
(
"
mappingStore
"
);
store
.
add
({
name
:
mappingJSON
.
getName
()});
if
(
store
.
find
(
"
name
"
,
mappingJSON
.
getName
())
===-
1
)
store
.
add
({
name
:
mappingJSON
.
getName
()});
//
// //take an array to store the object that we will get from the ajax response
// var records = [];
...
...
app/view/form/selectMappingForExtraction/SelectMappingForExtractionController.js
View file @
5e9f7a17
...
...
@@ -19,7 +19,6 @@ Ext.define('metExploreViz.view.form.selectMappingForExtraction.SelectMappingForE
show
:
function
(
that
){
var
store
=
Ext
.
getStore
(
"
mappingStore
"
);
store
.
filter
(
function
(
mapping
)
{
console
.
log
(
mapping
.
get
(
"
name
"
));
return
mapping
.
get
(
"
name
"
)
!==
"
None
"
;
})
},
...
...
resources/lib/functions/D3Extention.js
View file @
5e9f7a17
...
...
@@ -34,7 +34,8 @@ d3.selection.prototype.attrEditor = function(attr, val) {
* @param stroke
* @param strokewidth
*/
d3
.
selection
.
prototype
.
addNodeForm
=
function
(
width
,
height
,
rx
,
ry
,
stroke
,
strokewidth
)
{
d3
.
selection
.
prototype
.
addNodeForm
=
function
(
width
,
height
,
rx
,
ry
,
stroke
,
strokewidth
,
backgroundColor
,
transparency
)
{
this
.
append
(
"
rect
"
)
.
attr
(
"
class
"
,
function
(
d
)
{
return
d
.
getBiologicalType
();
})
.
attr
(
"
id
"
,
function
(
d
)
{
return
d
.
getId
();
})
...
...
@@ -47,7 +48,9 @@ d3.selection.prototype.addNodeForm = function(width, height, rx, ry, stroke, str
+
height
/
2
+
"
)
"
)
.
style
(
"
stroke
"
,
stroke
)
.
style
(
"
stroke-width
"
,
strokewidth
);
.
style
(
"
stroke-width
"
,
strokewidth
)
.
style
(
"
fill
"
,
backgroundColor
)
.
style
(
"
opacity
"
,
transparency
);
this
.
append
(
"
rect
"
).
attr
(
"
class
"
,
"
fontSelected
"
)
.
attr
(
"
width
"
,
function
(
d
)
{
return
d
.
getSvgWidth
();
})
...
...
@@ -56,7 +59,8 @@ d3.selection.prototype.addNodeForm = function(width, height, rx, ry, stroke, str
.
attr
(
"
ry
"
,
ry
)
.
attr
(
"
transform
"
,
"
translate(-
"
+
width
/
2
+
"
,-
"
+
height
/
2
+
"
)
"
)
.
style
(
"
fill-opacity
"
,
'
0
'
)
.
style
(
"
fill
"
,
'
#000
'
);
.
style
(
"
fill
"
,
"
#000
"
)
.
style
(
"
opacity
"
,
transparency
);
};
/****************************************
...
...
@@ -101,14 +105,21 @@ d3.selection.prototype.addNodeText = function(style) {
// Listening font-size attribute tu update tspan dy attr similarly
var
observer
=
new
MutationObserver
(
function
(
mutations
)
{
mutations
.
forEach
(
function
(
mutation
)
{
if
(
mutation
.
type
==
"
attributes
"
&&
mutation
.
oldValue
)
{
if
(
mutation
.
target
.
style
[
"
font-size
"
]
!==
mutation
.
oldValue
.
split
(
"
font-size:
"
)[
1
].
split
(
"
;
"
)[
0
]){
d3
.
select
(
mutation
.
target
).
selectAll
(
"
tspan
"
)
.
each
(
function
(
ts
,
i
)
{
if
(
i
>
0
){
d3
.
select
(
this
).
attr
(
'
dy
'
,
mutation
.
target
.
style
[
"
font-size
"
]);
}
});
if
(
mutation
.
type
==
"
attributes
"
)
{
if
(
mutation
.
oldValue
){
if
(
mutation
.
oldValue
.
split
(
"
font-size:
"
)[
1
]){
if
(
mutation
.
target
.
style
[
"
font-size
"
]
!==
mutation
.
oldValue
.
split
(
"
font-size:
"
)[
1
].
split
(
"
;
"
)[
0
]){
d3
.
select
(
mutation
.
target
).
selectAll
(
"
tspan
"
)
.
each
(
function
(
ts
,
i
)
{
if
(
i
>
0
){
if
(
mutation
.
target
.
style
[
"
font-size
"
])
d3
.
select
(
this
).
attr
(
'
dy
'
,
mutation
.
target
.
style
[
"
font-size
"
]);
else
d3
.
select
(
this
).
attr
(
'
dy
'
,
style
.
getFontSize
());
}
});
}
}
}
}
});
...
...
@@ -116,7 +127,7 @@ d3.selection.prototype.addNodeText = function(style) {
this
.
append
(
"
svg:text
"
)
.
attr
(
"
fill
"
,
"
#000000
"
)
.
attr
(
"
fill
"
,
style
.
getFontColor
()
)
.
attr
(
"
class
"
,
function
(
d
)
{
return
d
.
getBiologicalType
();
})
.
each
(
function
(
d
)
{
...
...
@@ -150,11 +161,10 @@ d3.selection.prototype.addNodeText = function(style) {
if
(
i
>
0
){
tspan
.
attr
(
'
dy
'
,
'
10
'
);
tspan
.
attr
(
'
dy
'
,
style
.
getFontSize
()
);
}
}
})
.
style
(
"
font-size
"
,
style
.
getFontSize
())
.
style
(
"
paint-order
"
,
"
stroke
"
)
.
style
(
"
stroke-width
"
,
1
)
.
style
(
"
stroke
"
,
"
white
"
)
...
...
@@ -164,11 +174,11 @@ d3.selection.prototype.addNodeText = function(style) {
.
style
(
"
pointer-events
"
,
'
none
'
)
.
style
(
"
text-anchor
"
,
'
middle
'
)
.
style
(
"
font-family
"
,
function
(
node
)
{
if
(
node
.
labelFont
)
if
(
node
.
labelFont
.
font
)
return
node
.
labelFont
.
font
;
})
.
style
(
"
font-size
"
,
function
(
node
)
{
if
(
node
.
labelFont
)
if
(
node
.
labelFont
.
fontSize
)
return
node
.
labelFont
.
f
ontSize
;
}
)
.
style
(
"
font-weight
"
,
function
(
node
)
{
if
(
node
.
labelFont
)
if
(
node
.
labelFont
.
fontBold
)
return
node
.
labelFont
.
fontBold
;
}
)
.
style
(
"
font-size
"
,
style
.
getF
ontSize
()
)
.
style
(
"
font-weight
"
,
style
.
getFontWeight
()
)
.
style
(
"
font-style
"
,
function
(
node
)
{
if
(
node
.
labelFont
)
if
(
node
.
labelFont
.
fontItalic
)
return
node
.
labelFont
.
fontItalic
;
})
.
style
(
"
text-decoration-line
"
,
function
(
node
)
{
if
(
node
.
labelFont
)
if
(
node
.
labelFont
.
fontUnderline
)
return
node
.
labelFont
.
fontUnderline
;
})
.
style
(
"
opacity
"
,
function
(
node
)
{
if
(
node
.
labelFont
)
if
(
node
.
labelFont
.
fontOpacity
)
return
node
.
labelFont
.
font
Opacity
;
}
)
.
style
(
"
opacity
"
,
style
.
getLabel
Opacity
()
)
.
style
(
"
x
"
,
function
(
node
)
{
if
(
node
.
labelFont
)
{
if
(
node
.
labelFont
.
fontX
){
...
...
resources/lib/functions/GraphFunction.js
View file @
5e9f7a17
...
...
@@ -1390,7 +1390,7 @@ metExploreD3.GraphFunction = {
{
if
(
force
!=
undefined
)
{
if
(
session
.
isAnimated
(
"
viz
"
)
==
true
)
if
(
session
.
isAnimated
(
"
viz
"
))
force
.
alpha
(
1
).
restart
();
}
}
...
...
resources/lib/functions/GraphLink.js
View file @
5e9f7a17
...
...
@@ -331,7 +331,7 @@ metExploreD3.GraphLink = {
})
.
style
(
"
stroke
"
,
linkStyle
.
getStrokeColor
())
.
style
(
"
stroke-width
"
,
linkStyle
.
getLineWidth
())
.
style
(
"
opacity
"
,
1
)
.
style
(
"
opacity
"
,
linkStyle
.
getOpacity
()
)
.
style
(
"
stroke-dasharray
"
,
null
);
...
...
resources/lib/functions/GraphMapping.js
View file @
5e9f7a17
...
...
@@ -174,12 +174,10 @@ metExploreD3.GraphMapping = {
metExploreD3
.
hideMask
(
myMask
);
var
anim
=
session
.
isAnimated
(
"
viz
"
);
if
(
anim
==
'
true
'
)
{
if
(
anim
)
{
var
force
=
session
.
getForce
();
if
(
metExploreD3
.
GraphNetwork
.
animation
)
{
force
.
alpha
(
1
).
restart
();
}
force
.
alpha
(
force
.
alpha
()).
restart
();
}
}
catch
(
e
)
{
...
...
@@ -187,13 +185,11 @@ metExploreD3.GraphMapping = {
e
.
functionUsed
=
"
mapNodeDataFile
"
;
metExploreD3
.
hideMask
(
myMask
);
var
anim
=
session
.
isAnimated
(
"
viz
"
);
if
(
anim
==
'
true
'
)
{
if
(
anim
)
{
var
session
=
_metExploreViz
.
getSessionById
(
'
viz
'
);
var
force
=
session
.
getForce
();
if
(
metExploreD3
.
GraphNetwork
.
animation
)
{
force
.
alpha
(
1
).
restart
();
}
force
.
alpha
(
force
.
alpha
()).
restart
();
}
throw
e
;
}
...
...
@@ -222,7 +218,7 @@ metExploreD3.GraphMapping = {
});
var
nodes
=
d3
.
select
(
"
#viz
"
).
select
(
"
#D3viz
"
).
select
(
"
#graphComponent
"
).
selectAll
(
"
g.node
"
);
var
node
=
undefined
;
var
links
=
undefined
;
switch
(
mapping
.
getTargetLabel
())
{
case
"
reactionDBIdentifier
"
:
for
(
var
i
=
conditions
.
length
-
1
;
i
>=
0
;
i
--
)
{
...
...
@@ -253,7 +249,6 @@ metExploreD3.GraphMapping = {
var
mapNode
=
new
MappingData
(
node
,
mapping
.
getName
(),
conditions
[
i
],
line
[
i
+
1
]);
node
.
addMappingData
(
mapNode
);
links
=
networkData
.
getLinkByDBIdReaction
(
node
.
getDbIdentifier
());
links
.
forEach
(
function
(
link
)
{
link
.
addMappingData
(
mapNode
);
...
...
@@ -302,12 +297,10 @@ metExploreD3.GraphMapping = {
metExploreD3
.
hideMask
(
myMask
);
var
anim
=
session
.
isAnimated
(
"
viz
"
);
if
(
anim
==
'
true
'
)
{
if
(
anim
)
{
var
force
=
session
.
getForce
();
if
(
metExploreD3
.
GraphNetwork
.
animation
)
{
force
.
alpha
(
1
).
restart
();
}
force
.
alpha
(
force
.
alpha
()).
restart
();
}
}
catch
(
e
)
{
...
...
@@ -316,13 +309,11 @@ metExploreD3.GraphMapping = {
metExploreD3
.
hideMask
(
myMask
);
var
anim
=
session
.
isAnimated
(
"
viz
"
);
if
(
anim
==
'
true
'
)
{
if
(
anim
)
{
var
session
=
_metExploreViz
.
getSessionById
(
'
viz
'
);
var
force
=
session
.
getForce
();
if
(
metExploreD3
.
GraphNetwork
.
animation
)
{
force
.
alpha
(
1
).
restart
();
}
force
.
alpha
(
force
.
alpha
()).
restart
();
}
throw
e
;
}
...
...
@@ -672,13 +663,11 @@ metExploreD3.GraphMapping = {
var
anim
=
session
.
isAnimated
(
"
viz
"
);
if
(
anim
==
'
true
'
)
{
if
(
anim
)
{
var
session
=
_metExploreViz
.
getSessionById
(
'
viz
'
);
var
force
=
session
.
getForce
();
if
(
metExploreD3
.
GraphNetwork
.
animation
)
{
force
.
alpha
(
1
).
restart
();
}
force
.
alpha
(
force
.
alpha
()).
restart
();
}
}
catch
(
e
)
{
...
...
@@ -687,13 +676,11 @@ metExploreD3.GraphMapping = {
metExploreD3
.
hideMask
(
myMask
);
var
anim
=
session
.
isAnimated
(
"
viz
"
);