Commit ddd0ed2e authored by magali's avatar magali
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fichiers lecimeta t0

parent 4e5f152a
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......@@ -101,7 +101,7 @@ qui contient les métadonnées suivantes:
sample_variables(frogs.data)
```
# Selection des echantillons / Analyses à TF
# Selection des echantillons / Analyses à T2
```{r sample selection,fig.width=10,fig.height=4, eval=TRUE}
## select only samples which read count higher than 10000
......@@ -231,7 +231,7 @@ levels = correct.order)
p <- plot_composition(frogs.data.merged, "Kingdom", "Bacteria", "Phylum",numberOfTaxa = 6, fill = "Phylum")
p <- p + facet_wrap(~Group, scales = "free_x", nrow = 1)
p <- p + ggtitle("Phylum Composition TF (12 top Phylum)")+
p <- p + ggtitle("Phylum Composition T2 (12 top Phylum)")+
scale_y_continuous(label = scales::percent) + theme(axis.text.x = element_blank())
plot(p)
......
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