fichiers lecimeta t0

LECIMETA/LECIMETA T2.Rmd

@@ -101,7 +101,7 @@ qui contient les métadonnées suivantes:
 sample_variables(frogs.data)
 ```
 
-# Selection des echantillons / Analyses à TF
+# Selection des echantillons / Analyses à T2
 
 ```{r sample selection,fig.width=10,fig.height=4, eval=TRUE}
 ## select only samples which read count higher than 10000 
@@ -231,7 +231,7 @@ levels = correct.order)
 
 p <- plot_composition(frogs.data.merged, "Kingdom", "Bacteria", "Phylum",numberOfTaxa = 6, fill = "Phylum")
 p <- p + facet_wrap(~Group, scales = "free_x", nrow = 1)
-p <- p + ggtitle("Phylum Composition TF (12 top Phylum)")+
+p <- p + ggtitle("Phylum Composition T2 (12 top Phylum)")+
       scale_y_continuous(label = scales::percent) +  theme(axis.text.x = element_blank())
 
 plot(p)