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Commit f5b2765d authored by Laura Morel's avatar Laura Morel
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Add Django

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Django/VizFaDa/asgi.py 0 → 100644
View file @ f5b2765d
"""
ASGI config for VizFaDa project.
It exposes the ASGI callable as a module-level variable named ``application``.
For more information on this file, see
https://docs.djangoproject.com/en/3.1/howto/deployment/asgi/
"""
import os
from django.core.asgi import get_asgi_application
os.environ.setdefault('DJANGO_SETTINGS_MODULE', 'VizFaDa.settings')
application = get_asgi_application()
Django/VizFaDa/settings.py 0 → 100644
View file @ f5b2765d
"""
Django settings for VizFaDa project.
Generated by 'django-admin startproject' using Django 3.1.
For more information on this file, see
https://docs.djangoproject.com/en/3.1/topics/settings/
For the full list of settings and their values, see
https://docs.djangoproject.com/en/3.1/ref/settings/
"""
from pathlib import Path
import os
import corsheaders
# Build paths inside the project like this: BASE_DIR / 'subdir'.
BASE_DIR = Path(__file__).resolve(strict=True).parent.parent
# Quick-start development settings - unsuitable for production
# See https://docs.djangoproject.com/en/3.1/howto/deployment/checklist/
# SECURITY WARNING: keep the secret key used in production secret!
SECRET_KEY = 'r3hynqwm9fvnhf7$_svv88y$#jtekrinmns9ajki6u$my@n)im'
# SECURITY WARNING: don't run with debug turned on in production!
DEBUG = True
ALLOWED_HOSTS = []
CORS_ORIGIN_ALLOW_ALL = False
CORS_ALLOWED_ORIGINS = [
'http://localhost:4200',
]
# Application definition
INSTALLED_APPS = [
'data.apps.DataConfig',
'django.contrib.admin',
'django.contrib.auth',
'django.contrib.contenttypes',
'django.contrib.sessions',
'django.contrib.messages',
'django.contrib.staticfiles',
'corsheaders',
]
MIDDLEWARE = [
'corsheaders.middleware.CorsMiddleware',
'django.middleware.security.SecurityMiddleware',
'django.contrib.sessions.middleware.SessionMiddleware',
'django.middleware.common.CommonMiddleware',
'django.middleware.csrf.CsrfViewMiddleware',
'django.contrib.auth.middleware.AuthenticationMiddleware',
'django.contrib.messages.middleware.MessageMiddleware',
'django.middleware.clickjacking.XFrameOptionsMiddleware',
]
ROOT_URLCONF = 'VizFaDa.urls'
TEMPLATES = [
{
'BACKEND': 'django.template.backends.django.DjangoTemplates',
'DIRS': [],
'APP_DIRS': True,
'OPTIONS': {
'context_processors': [
'django.template.context_processors.debug',
'django.template.context_processors.request',
'django.contrib.auth.context_processors.auth',
'django.contrib.messages.context_processors.messages',
],
},
},
]
WSGI_APPLICATION = 'VizFaDa.wsgi.application'
# Database
# https://docs.djangoproject.com/en/3.1/ref/settings/#databases
DATABASES = {
'default': {
'ENGINE': 'django.db.backends.sqlite3',
'NAME': BASE_DIR / 'db.sqlite3',
}
}
# Password validation
# https://docs.djangoproject.com/en/3.1/ref/settings/#auth-password-validators
AUTH_PASSWORD_VALIDATORS = [
{
'NAME': 'django.contrib.auth.password_validation.UserAttributeSimilarityValidator',
},
{
'NAME': 'django.contrib.auth.password_validation.MinimumLengthValidator',
},
{
'NAME': 'django.contrib.auth.password_validation.CommonPasswordValidator',
},
{
'NAME': 'django.contrib.auth.password_validation.NumericPasswordValidator',
},
]
# Internationalization
# https://docs.djangoproject.com/en/3.1/topics/i18n/
LANGUAGE_CODE = 'en-us'
TIME_ZONE = 'UTC'
USE_I18N = True
USE_L10N = True
USE_TZ = True
# Static files (CSS, JavaScript, Images)
# https://docs.djangoproject.com/en/3.1/howto/static-files/
STATIC_URL = '/assets/'
STATIC_ROOT = os.path.join(BASE_DIR, "assets")
STATICFILES_DIRS = [ os.path.join(BASE_DIR, "data/assets")]
Django/VizFaDa/urls.py 0 → 100644
View file @ f5b2765d
"""VizFaDa URL Configuration
The `urlpatterns` list routes URLs to views. For more information please see:
https://docs.djangoproject.com/en/3.1/topics/http/urls/
Examples:
Function views
1. Add an import: from my_app import views
2. Add a URL to urlpatterns: path('', views.home, name='home')
Class-based views
1. Add an import: from other_app.views import Home
2. Add a URL to urlpatterns: path('', Home.as_view(), name='home')
Including another URLconf
1. Import the include() function: from django.urls import include, path
2. Add a URL to urlpatterns: path('blog/', include('blog.urls'))
"""
from django.contrib import admin
from django.urls import include, path
from django.conf.urls.static import static
from django.conf import settings
urlpatterns = [
path('admin/', admin.site.urls),
path('api/', include('data.urls', namespace='data')),
] + static(settings.STATIC_URL, document_root=settings.STATIC_ROOT)
Django/VizFaDa/wsgi.py 0 → 100644
View file @ f5b2765d
"""
WSGI config for VizFaDa project.
It exposes the WSGI callable as a module-level variable named ``application``.
For more information on this file, see
https://docs.djangoproject.com/en/3.1/howto/deployment/wsgi/
"""
import os
from django.core.wsgi import get_wsgi_application
os.environ.setdefault('DJANGO_SETTINGS_MODULE', 'VizFaDa.settings')
application = get_wsgi_application()
Django/assets/Bos_taurus/correlation.csv 0 → 100644
View file @ f5b2765d
This source diff could not be displayed because it is too large. You can view the blob instead.
Django/assets/Bos_taurus/metadata.tsv 0 → 100644
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This source diff could not be displayed because it is too large. You can view the blob instead.
Django/assets/Gallus_gallus/correlation.csv 0 → 100644
View file @ f5b2765d
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Django/assets/Gallus_gallus/metadata.tsv 0 → 100644
View file @ f5b2765d
"specimen" "secondaryProject_file" "archive" "organism" "submission" "paperPublished_file" "publishedArticles_file" "species_ontologyTerms" "species_text" "study_alias" "study_title" "study_secondaryAccession" "study_accession" "experiment_assayType" "experiment_target" "experiment_accession" "run_alias" "run_sequencingLongitude" "run_centerName" "run_instrument" "run_sequencingDate" "run_sequencingLatitude" "run_sequencingLocation" "run_platform" "run_accession" "description" "customField" "updateDate_specimen" "releaseDate_specimen" "biosampleId" "alternativeId" "etag" "project" "organization" "derivedFrom" "organism_biosampleId" "organism_healthStatus" "organism_organism_ontologyTerms" "organism_organism_text" "organism_breed_text" "organism_breed_ontologyTerms" "organism_sex_text" "organism_sex_ontologyTerms" "material_ontologyTerms" "material_text" "specimenFromOrganism_healthStatusAtCollection" "specimenFromOrganism_fastedStatus" "specimenFromOrganism_specimenPictureUrl" "specimenFromOrganism_organismPart_ontologyTerms" "specimenFromOrganism_organismPart_text" "specimenFromOrganism_developmentalStage_text" "specimenFromOrganism_developmentalStage_ontologyTerms" "specimenFromOrganism_specimenCollectionDate_text" "specimenFromOrganism_specimenCollectionDate_unit" "specimenFromOrganism_specimenCollectionProtocol_url" "specimenFromOrganism_specimenCollectionProtocol_filename" "specimenFromOrganism_animalAgeAtCollection_text" "specimenFromOrganism_animalAgeAtCollection_unit" "cellType_ontologyTerms" "cellType_text" "cellSpecimen_cellType" "cellSpecimen_purificationProtocol_url" "cellSpecimen_purificationProtocol_filename"
"SAMEA103992344" "" "ENA" "SAMEA103992627" "ERA1526542" "true" "[{\"year\":\"2020\",\"articleId\":\"PMC6958677\",\"journal\":\"BMC Genomics\",\"title\":\"GWAS and fine-mapping of livability and six disease traits in Holstein cattle.\"},{\"year\":\"2019\",\"articleId\":\"PMC6775213\",\"journal\":\"Front Immunol\",\"title\":\"The Structure, Evolution, and Gene Expression Within the Caprine Leukocyte Receptor Complex.\"},{\"year\":\"2019\",\"articleId\":\"PMC6936065\",\"journal\":\"BMC Biol\",\"title\":\"Multi-species annotation of transcriptome and chromatin structure in domesticated animals.\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "INRA_FRAGENCODE_20180620_RNASEQ" "Transcriptome profiling of liver and T cells in 4 livestock species by the FAANG pilot project FR-AgENCODE" "ERP109534" "PRJEB27455" "transcription profiling by high throughput sequencing" "polyA RNA" "ERX2680012" "rnaseq.gallus_gallus.liver.chicken1" "1.499654" "INRA (INRA Toulouse)" "Illumina HiSeq 3000" "2016-07-08T00:00:00" "43.527573" "Plateforme Genomique de Toulouse, INRA Castanet-Tolosan, France" "ILLUMINA" "ERR2664214" "liver parenchyma" "[{\"value\":\"ERS2686809\",\"name\":\"SRA accession\"},{\"value\":\"submission of samples collected in the frame of the project Fr-AGENCODE\",\"name\":\"submission description\"},{\"value\":\"GSB-1757\",\"name\":\"submission identifier\"},{\"value\":\"Fr-AGENCODE main submission - part 2\",\"name\":\"submission title\"}]" "2020-05-19" "2016-11-04" "SAMEA103992344" "[]" "\"0a26308dc4e1101fa8e146e07e3135666\"" "FAANG" "[{\"URL\":\"http://abridge.inra.fr/\",\"name\":\"INRA\",\"role\":\"institution\"}]" "[\"SAMEA103992627\"]" "SAMEA103992627" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "White Leghorn" "http://purl.obolibrary.org/obo/LBO_0001061" "male" "http://purl.obolibrary.org/obo/PATO_0000384" "http://purl.obolibrary.org/obo/OBI_0001479" "specimen from organism" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" NA "[]" "http://purl.obolibrary.org/obo/UBERON_0001280" "liver parenchyma" "adult" "http://www.ebi.ac.uk/efo/EFO_0001272" "2015-07-02" "YYYY-MM-DD" "ftp://ftp.faang.ebi.ac.uk/ftp/protocols/samples/INRA_SOP_tissue_sampling_1a_20160721.pdf" "INRA_SOP_tissue_sampling_1a_20160721.pdf" "387" "day" "http://purl.obolibrary.org/obo/UBERON_0001280" "liver parenchyma" "{}" NA NA
"SAMEA103992351" "" "ENA" "SAMEA103992622" "ERA1526542" "true" "[{\"year\":\"2020\",\"articleId\":\"PMC6958677\",\"journal\":\"BMC Genomics\",\"title\":\"GWAS and fine-mapping of livability and six disease traits in Holstein cattle.\"},{\"year\":\"2019\",\"articleId\":\"PMC6775213\",\"journal\":\"Front Immunol\",\"title\":\"The Structure, Evolution, and Gene Expression Within the Caprine Leukocyte Receptor Complex.\"},{\"year\":\"2019\",\"articleId\":\"PMC6936065\",\"journal\":\"BMC Biol\",\"title\":\"Multi-species annotation of transcriptome and chromatin structure in domesticated animals.\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "INRA_FRAGENCODE_20180620_RNASEQ" "Transcriptome profiling of liver and T cells in 4 livestock species by the FAANG pilot project FR-AgENCODE" "ERP109534" "PRJEB27455" "transcription profiling by high throughput sequencing" "polyA RNA" "ERX2680014" "rnaseq.gallus_gallus.liver.chicken3" "1.499654" "INRA (INRA Toulouse)" "Illumina HiSeq 3000" "2016-07-08T00:00:00" "43.527573" "Plateforme Genomique de Toulouse, INRA Castanet-Tolosan, France" "ILLUMINA" "ERR2664216" "liver parenchyma" "[{\"value\":\"ERS2686828\",\"name\":\"SRA accession\"},{\"value\":\"submission of samples collected in the frame of the project Fr-AGENCODE\",\"name\":\"submission description\"},{\"value\":\"GSB-1757\",\"name\":\"submission identifier\"},{\"value\":\"Fr-AGENCODE main submission - part 2\",\"name\":\"submission title\"}]" "2020-05-19" "2016-11-04" "SAMEA103992351" "[]" "\"0ede01aa640a000883cecbfd765410c16\"" "FAANG" "[{\"URL\":\"http://abridge.inra.fr/\",\"name\":\"INRA\",\"role\":\"institution\"}]" "[\"SAMEA103992622\"]" "SAMEA103992622" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "White Leghorn" "http://purl.obolibrary.org/obo/LBO_0001061" "female" "http://purl.obolibrary.org/obo/PATO_0000383" "http://purl.obolibrary.org/obo/OBI_0001479" "specimen from organism" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" NA "[]" "http://purl.obolibrary.org/obo/UBERON_0001280" "liver parenchyma" "adult" "http://www.ebi.ac.uk/efo/EFO_0001272" "2015-07-02" "YYYY-MM-DD" "ftp://ftp.faang.ebi.ac.uk/ftp/protocols/samples/INRA_SOP_tissue_sampling_1a_20160721.pdf" "INRA_SOP_tissue_sampling_1a_20160721.pdf" "387" "day" "http://purl.obolibrary.org/obo/UBERON_0001280" "liver parenchyma" "{}" NA NA
"SAMEA103992362" "" "ENA" "SAMEA103992250" "ERA1526542" "true" "[{\"year\":\"2020\",\"articleId\":\"PMC6958677\",\"journal\":\"BMC Genomics\",\"title\":\"GWAS and fine-mapping of livability and six disease traits in Holstein cattle.\"},{\"year\":\"2019\",\"articleId\":\"PMC6775213\",\"journal\":\"Front Immunol\",\"title\":\"The Structure, Evolution, and Gene Expression Within the Caprine Leukocyte Receptor Complex.\"},{\"year\":\"2019\",\"articleId\":\"PMC6936065\",\"journal\":\"BMC Biol\",\"title\":\"Multi-species annotation of transcriptome and chromatin structure in domesticated animals.\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "INRA_FRAGENCODE_20180620_RNASEQ" "Transcriptome profiling of liver and T cells in 4 livestock species by the FAANG pilot project FR-AgENCODE" "ERP109534" "PRJEB27455" "transcription profiling by high throughput sequencing" "polyA RNA" "ERX2680013" "rnaseq.gallus_gallus.liver.chicken2" "1.499654" "INRA (INRA Toulouse)" "Illumina HiSeq 3000" "2016-07-08T00:00:00" "43.527573" "Plateforme Genomique de Toulouse, INRA Castanet-Tolosan, France" "ILLUMINA" "ERR2664215" "liver parenchyma" "[{\"value\":\"ERS2686807\",\"name\":\"SRA accession\"},{\"value\":\"submission of samples collected in the frame of the project Fr-AGENCODE\",\"name\":\"submission description\"},{\"value\":\"GSB-1757\",\"name\":\"submission identifier\"},{\"value\":\"Fr-AGENCODE main submission - part 2\",\"name\":\"submission title\"}]" "2020-05-19" "2016-11-04" "SAMEA103992362" "[]" "\"049104ed2a668d4f88759a8136f788b19\"" "FAANG" "[{\"URL\":\"http://abridge.inra.fr/\",\"name\":\"INRA\",\"role\":\"institution\"}]" "[\"SAMEA103992250\"]" "SAMEA103992250" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "White Leghorn" "http://purl.obolibrary.org/obo/LBO_0001061" "male" "http://purl.obolibrary.org/obo/PATO_0000384" "http://purl.obolibrary.org/obo/OBI_0001479" "specimen from organism" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" NA "[]" "http://purl.obolibrary.org/obo/UBERON_0001280" "liver parenchyma" "adult" "http://www.ebi.ac.uk/efo/EFO_0001272" "2015-07-02" "YYYY-MM-DD" "ftp://ftp.faang.ebi.ac.uk/ftp/protocols/samples/INRA_SOP_tissue_sampling_1a_20160721.pdf" "INRA_SOP_tissue_sampling_1a_20160721.pdf" "387" "day" "http://purl.obolibrary.org/obo/UBERON_0001280" "liver parenchyma" "{}" NA NA
"SAMEA103992467" "" "ENA" "SAMEA103992658" "ERA1526542" "true" "[{\"year\":\"2020\",\"articleId\":\"PMC6958677\",\"journal\":\"BMC Genomics\",\"title\":\"GWAS and fine-mapping of livability and six disease traits in Holstein cattle.\"},{\"year\":\"2019\",\"articleId\":\"PMC6775213\",\"journal\":\"Front Immunol\",\"title\":\"The Structure, Evolution, and Gene Expression Within the Caprine Leukocyte Receptor Complex.\"},{\"year\":\"2019\",\"articleId\":\"PMC6936065\",\"journal\":\"BMC Biol\",\"title\":\"Multi-species annotation of transcriptome and chromatin structure in domesticated animals.\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "INRA_FRAGENCODE_20180620_RNASEQ" "Transcriptome profiling of liver and T cells in 4 livestock species by the FAANG pilot project FR-AgENCODE" "ERP109534" "PRJEB27455" "transcription profiling by high throughput sequencing" "polyA RNA" "ERX2680015" "rnaseq.gallus_gallus.liver.chicken4" "1.499654" "INRA (INRA Toulouse)" "Illumina HiSeq 3000" "2016-07-08T00:00:00" "43.527573" "Plateforme Genomique de Toulouse, INRA Castanet-Tolosan, France" "ILLUMINA" "ERR2664217" "liver parenchyma" "[{\"value\":\"ERS2686808\",\"name\":\"SRA accession\"},{\"value\":\"submission of samples collected in the frame of the project Fr-AGENCODE\",\"name\":\"submission description\"},{\"value\":\"GSB-1757\",\"name\":\"submission identifier\"},{\"value\":\"Fr-AGENCODE main submission - part 2\",\"name\":\"submission title\"}]" "2020-05-19" "2016-11-04" "SAMEA103992467" "[]" "\"0bd1133f7a7023d6352c75f8bb6a41479\"" "FAANG" "[{\"URL\":\"http://abridge.inra.fr/\",\"name\":\"INRA\",\"role\":\"institution\"}]" "[\"SAMEA103992658\"]" "SAMEA103992658" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "White Leghorn" "http://purl.obolibrary.org/obo/LBO_0001061" "female" "http://purl.obolibrary.org/obo/PATO_0000383" "http://purl.obolibrary.org/obo/OBI_0001479" "specimen from organism" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" NA "[]" "http://purl.obolibrary.org/obo/UBERON_0001280" "liver parenchyma" "adult" "http://www.ebi.ac.uk/efo/EFO_0001272" "2015-07-02" "YYYY-MM-DD" "ftp://ftp.faang.ebi.ac.uk/ftp/protocols/samples/INRA_SOP_tissue_sampling_1a_20160721.pdf" "INRA_SOP_tissue_sampling_1a_20160721.pdf" "387" "day" "http://purl.obolibrary.org/obo/UBERON_0001280" "liver parenchyma" "{}" NA NA
"SAMEA1088310" "" "ENA" "SAMEA103992622" "ERA1526542" "true" "[{\"year\":\"2020\",\"articleId\":\"PMC6958677\",\"journal\":\"BMC Genomics\",\"title\":\"GWAS and fine-mapping of livability and six disease traits in Holstein cattle.\"},{\"year\":\"2019\",\"articleId\":\"PMC6775213\",\"journal\":\"Front Immunol\",\"title\":\"The Structure, Evolution, and Gene Expression Within the Caprine Leukocyte Receptor Complex.\"},{\"year\":\"2019\",\"articleId\":\"PMC6936065\",\"journal\":\"BMC Biol\",\"title\":\"Multi-species annotation of transcriptome and chromatin structure in domesticated animals.\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "INRA_FRAGENCODE_20180620_RNASEQ" "Transcriptome profiling of liver and T cells in 4 livestock species by the FAANG pilot project FR-AgENCODE" "ERP109534" "PRJEB27455" "transcription profiling by high throughput sequencing" "polyA RNA" "ERX2680009" "rnaseq.gallus_gallus.cd4.chicken3" "1.499654" "INRA (INRA Toulouse)" "Illumina HiSeq 3000" "2016-08-12T00:00:00" "43.527573" "Plateforme Genomique de Toulouse, INRA Castanet-Tolosan, France" "ILLUMINA" "ERR2664197" "helper T-lymphocyte CD4+" "[{\"value\":\"ERS2686811\",\"name\":\"SRA accession\"},{\"value\":\"FR-AgENCODE : Sample used for RNA-Seq Sequencing\",\"name\":\"submission description\"},{\"value\":\"GSB-99\",\"name\":\"submission identifier\"},{\"value\":\"FR-AgENCODE : Sample used for RNA-Seq Sequencing\",\"name\":\"submission title\"}]" "2020-05-19" "2018-02-23" "SAMEA1088310" "[]" "\"0bb2dae4eb423fba9614929d4d7c5956a\"" "FAANG" "[{\"URL\":\"http://abridge.inra.fr\",\"name\":\"INRA\",\"role\":\"institution\"}]" "[\"SAMEA1088350\"]" "SAMEA103992622" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "White Leghorn" "http://purl.obolibrary.org/obo/LBO_0001061" "female" "http://purl.obolibrary.org/obo/PATO_0000383" "http://purl.obolibrary.org/obo/OBI_0001468" "cell specimen" "{}" NA "{}" NA NA NA NA NA NA NA NA NA NA "http://purl.obolibrary.org/obo/CL_0000492" "CD4-positive helper T cell" "[{\"ontologyTerms\":[\"http://purl.obolibrary.org/obo/CL_0000492\"],\"text\":\"CD4-positive helper T cell\"}]" "ftp://ftp.faang.ebi.ac.uk/ftp/protocols/samples/INRA_SOP_sorting_chicken_CD_cells_20180213.pdf" "INRA_SOP_sorting_chicken_CD_cells_20180213.pdf"
"SAMEA1088344" "" "ENA" "SAMEA103992658" "ERA1526542" "true" "[{\"year\":\"2020\",\"articleId\":\"PMC6958677\",\"journal\":\"BMC Genomics\",\"title\":\"GWAS and fine-mapping of livability and six disease traits in Holstein cattle.\"},{\"year\":\"2019\",\"articleId\":\"PMC6775213\",\"journal\":\"Front Immunol\",\"title\":\"The Structure, Evolution, and Gene Expression Within the Caprine Leukocyte Receptor Complex.\"},{\"year\":\"2019\",\"articleId\":\"PMC6936065\",\"journal\":\"BMC Biol\",\"title\":\"Multi-species annotation of transcriptome and chromatin structure in domesticated animals.\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "INRA_FRAGENCODE_20180620_RNASEQ" "Transcriptome profiling of liver and T cells in 4 livestock species by the FAANG pilot project FR-AgENCODE" "ERP109534" "PRJEB27455" "transcription profiling by high throughput sequencing" "polyA RNA" "ERX2680010" "rnaseq.gallus_gallus.cd4.chicken4" "1.499654" "INRA (INRA Toulouse)" "Illumina HiSeq 3000" "2016-08-12T00:00:00" "43.527573" "Plateforme Genomique de Toulouse, INRA Castanet-Tolosan, France" "ILLUMINA" "ERR2664198" "helper T-lymphocyte CD4+" "[{\"value\":\"ERS2733812\",\"name\":\"SRA accession\"},{\"value\":\"FR-AgENCODE : Sample used for RNA-Seq Sequencing\",\"name\":\"submission description\"},{\"value\":\"GSB-99\",\"name\":\"submission identifier\"},{\"value\":\"FR-AgENCODE : Sample used for RNA-Seq Sequencing\",\"name\":\"submission title\"}]" "2020-05-19" "2018-02-23" "SAMEA1088344" "[]" "\"02a662990a21c65767e5762c07693fa07\"" "FAANG" "[{\"URL\":\"http://abridge.inra.fr\",\"name\":\"INRA\",\"role\":\"institution\"}]" "[\"SAMEA1088321\"]" "SAMEA103992658" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "White Leghorn" "http://purl.obolibrary.org/obo/LBO_0001061" "female" "http://purl.obolibrary.org/obo/PATO_0000383" "http://purl.obolibrary.org/obo/OBI_0001468" "cell specimen" "{}" NA "{}" NA NA NA NA NA NA NA NA NA NA "http://purl.obolibrary.org/obo/CL_0000492" "CD4-positive helper T cell" "[{\"ontologyTerms\":[\"http://purl.obolibrary.org/obo/CL_0000492\"],\"text\":\"CD4-positive helper T cell\"}]" "ftp://ftp.faang.ebi.ac.uk/ftp/protocols/samples/INRA_SOP_sorting_chicken_CD_cells_20180213.pdf" "INRA_SOP_sorting_chicken_CD_cells_20180213.pdf"
"SAMEA1088352" "" "ENA" "SAMEA103992658" "ERA1526542" "true" "[{\"year\":\"2020\",\"articleId\":\"PMC6958677\",\"journal\":\"BMC Genomics\",\"title\":\"GWAS and fine-mapping of livability and six disease traits in Holstein cattle.\"},{\"year\":\"2019\",\"articleId\":\"PMC6775213\",\"journal\":\"Front Immunol\",\"title\":\"The Structure, Evolution, and Gene Expression Within the Caprine Leukocyte Receptor Complex.\"},{\"year\":\"2019\",\"articleId\":\"PMC6936065\",\"journal\":\"BMC Biol\",\"title\":\"Multi-species annotation of transcriptome and chromatin structure in domesticated animals.\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "INRA_FRAGENCODE_20180620_RNASEQ" "Transcriptome profiling of liver and T cells in 4 livestock species by the FAANG pilot project FR-AgENCODE" "ERP109534" "PRJEB27455" "transcription profiling by high throughput sequencing" "polyA RNA" "ERX2680011" "rnaseq.gallus_gallus.cd8.chicken4" "1.499654" "INRA (INRA Toulouse)" "Illumina HiSeq 3000" "2016-08-12T00:00:00" "43.527573" "Plateforme Genomique de Toulouse, INRA Castanet-Tolosan, France" "ILLUMINA" "ERR2664180" "cytotoxic T-lymphocyte CD8+" "[{\"value\":\"ERS2733810\",\"name\":\"SRA accession\"},{\"value\":\"FR-AgENCODE : Sample used for RNA-Seq Sequencing\",\"name\":\"submission description\"},{\"value\":\"GSB-99\",\"name\":\"submission identifier\"},{\"value\":\"FR-AgENCODE : Sample used for RNA-Seq Sequencing\",\"name\":\"submission title\"}]" "2020-05-19" "2018-02-23" "SAMEA1088352" "[]" "\"0cf5db115d3673b86bc1699e3b60ff3f2\"" "FAANG" "[{\"URL\":\"http://abridge.inra.fr\",\"name\":\"INRA\",\"role\":\"institution\"}]" "[\"SAMEA1088321\"]" "SAMEA103992658" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "White Leghorn" "http://purl.obolibrary.org/obo/LBO_0001061" "female" "http://purl.obolibrary.org/obo/PATO_0000383" "http://purl.obolibrary.org/obo/OBI_0001468" "cell specimen" "{}" NA "{}" NA NA NA NA NA NA NA NA NA NA "http://purl.obolibrary.org/obo/CL_0000794" "CD8-positive, alpha-beta cytotoxic T cell" "[{\"ontologyTerms\":[\"http://purl.obolibrary.org/obo/CL_0000794\"],\"text\":\"CD8-positive, alpha-beta cytotoxic T cell\"}]" "ftp://ftp.faang.ebi.ac.uk/ftp/protocols/samples/INRA_SOP_sorting_chicken_CD_cells_20180213.pdf" "INRA_SOP_sorting_chicken_CD_cells_20180213.pdf"
"SAMEA4454484" "" "ENA" "SAMEA4454495" "ERA653275" "true" "[{\"year\":\"2020\",\"articleId\":\"PMC7089989\",\"journal\":\"Sci Rep\",\"title\":\"Systematic alteration of ATAC-seq for profiling open chromatin in cryopreserved nuclei preparations from livestock tissues.\"},{\"year\":\"2018\",\"articleId\":\"PMC6145346\",\"journal\":\"BMC Genomics\",\"title\":\"Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species.\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "ena-STUDY-UC DAVIS-07-06-2016-18:34:56:918-275" "Genome-wide Functional Annotation of Regulatory Elements in Livestock Species" "ERP015966" "PRJEB14330" "transcription profiling by high throughput sequencing" "polyA RNA" "ERX1534665" "ena-RUN-UC DAVIS-20-06-2016-17:24:08:821-35" "-121.7405" "UC DAVIS" "Illumina HiSeq 3000" "2015-05-11" "38.5449" "UC Davis Sequencing Center" "ILLUMINA" "ERR1464188" "Cerebellum" "[{\"value\":\"SRS3906966\",\"name\":\"SRA accession\"}]" "2020-05-19" "2016-06-05" "SAMEA4454484" "[]" "\"08583d812c19b9fc1a9bf05d4b3731e35\"" "FAANG" "[{\"URL\":\"http://www.ars.usda.gov/main/site_main.htm?modecode=50-50-10-00\",\"name\":\"USDA-ARS, Avian Disease and Oncology Laboratory\",\"role\":\"material supplier role \"}]" "[\"SAMEA4454495\"]" "SAMEA4454495" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "White Leghorn line 6x White Leghorn line 7" "http://purl.obolibrary.org/obo/LBO_0001037" "male" "PATO_0000384" "http://purl.obolibrary.org/obo/OBI_0001479" "specimen from organism" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "fed" "[]" "http://purl.obolibrary.org/obo/UBERON_0002037" "cerebellum" "adult" "http://www.ebi.ac.uk/efo/EFO_0001272" "2015-01-22" "YYYY-MM-DD" "http://ftp.faang.ebi.ac.uk/ftp/protocols/samples/UCD_SOP_50_TissueCollection_20160520.pdf" "UCD_SOP_50_TissueCollection_20160520.pdf" "20" "week" "http://purl.obolibrary.org/obo/UBERON_0002037" "cerebellum" "{}" NA NA
"SAMEA4454488" "" "ENA" "SAMEA4454495" "ERA653275" "true" "[{\"year\":\"2020\",\"articleId\":\"PMC7089989\",\"journal\":\"Sci Rep\",\"title\":\"Systematic alteration of ATAC-seq for profiling open chromatin in cryopreserved nuclei preparations from livestock tissues.\"},{\"year\":\"2018\",\"articleId\":\"PMC6145346\",\"journal\":\"BMC Genomics\",\"title\":\"Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species.\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "ena-STUDY-UC DAVIS-07-06-2016-18:34:56:918-275" "Genome-wide Functional Annotation of Regulatory Elements in Livestock Species" "ERP015966" "PRJEB14330" "transcription profiling by high throughput sequencing" "polyA RNA" "ERX1534677" "ena-RUN-UC DAVIS-20-06-2016-17:24:08:823-47" "-121.7405" "UC DAVIS" "Illumina HiSeq 3000" "2015-05-11" "38.5449" "UC Davis Sequencing Center" "ILLUMINA" "ERR1464200" "Spleen" "[{\"value\":\"SRS3906978\",\"name\":\"SRA accession\"}]" "2020-05-19" "2016-06-05" "SAMEA4454488" "[]" "\"061d0cb32e827b01fd4c57bdba5792fbb\"" "FAANG" "[{\"URL\":\"http://www.ars.usda.gov/main/site_main.htm?modecode=50-50-10-00\",\"name\":\"USDA-ARS, Avian Disease and Oncology Laboratory\",\"role\":\"material supplier role \"}]" "[\"SAMEA4454495\"]" "SAMEA4454495" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "White Leghorn line 6x White Leghorn line 7" "http://purl.obolibrary.org/obo/LBO_0001037" "male" "PATO_0000384" "http://purl.obolibrary.org/obo/OBI_0001479" "specimen from organism" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "fed" "[]" "http://purl.obolibrary.org/obo/UBERON_0002106" "spleen" "adult" "http://www.ebi.ac.uk/efo/EFO_0001272" "2015-01-22" "YYYY-MM-DD" "http://ftp.faang.ebi.ac.uk/ftp/protocols/samples/UCD_SOP_50_TissueCollection_20160520.pdf" "UCD_SOP_50_TissueCollection_20160520.pdf" "20" "week" "http://purl.obolibrary.org/obo/UBERON_0002106" "spleen" "{}" NA NA
"SAMEA4454490" "" "ENA" "SAMEA4454495" "ERA653275" "true" "[{\"year\":\"2020\",\"articleId\":\"PMC7089989\",\"journal\":\"Sci Rep\",\"title\":\"Systematic alteration of ATAC-seq for profiling open chromatin in cryopreserved nuclei preparations from livestock tissues.\"},{\"year\":\"2018\",\"articleId\":\"PMC6145346\",\"journal\":\"BMC Genomics\",\"title\":\"Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species.\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "ena-STUDY-UC DAVIS-07-06-2016-18:34:56:918-275" "Genome-wide Functional Annotation of Regulatory Elements in Livestock Species" "ERP015966" "PRJEB14330" "transcription profiling by high throughput sequencing" "polyA RNA" "ERX1534669" "ena-RUN-UC DAVIS-20-06-2016-17:24:08:822-39" "-121.7405" "UC DAVIS" "Illumina HiSeq 3000" "2015-05-11" "38.5449" "UC Davis Sequencing Center" "ILLUMINA" "ERR1464192" "Hypothalamus" "[{\"value\":\"SRS3906970\",\"name\":\"SRA accession\"}]" "2020-05-19" "2016-06-05" "SAMEA4454490" "[]" "\"00a952b98c50387e6c417b5935c569e38\"" "FAANG" "[{\"URL\":\"http://www.ars.usda.gov/main/site_main.htm?modecode=50-50-10-00\",\"name\":\"USDA-ARS, Avian Disease and Oncology Laboratory\",\"role\":\"material supplier role \"}]" "[\"SAMEA4454495\"]" "SAMEA4454495" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "White Leghorn line 6x White Leghorn line 7" "http://purl.obolibrary.org/obo/LBO_0001037" "male" "PATO_0000384" "http://purl.obolibrary.org/obo/OBI_0001479" "specimen from organism" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "fed" "[]" "http://purl.obolibrary.org/obo/UBERON_0001898" "hypothalamus" "adult" "http://www.ebi.ac.uk/efo/EFO_0001272" "2015-01-22" "YYYY-MM-DD" "http://ftp.faang.ebi.ac.uk/ftp/protocols/samples/UCD_SOP_50_TissueCollection_20160520.pdf" "UCD_SOP_50_TissueCollection_20160520.pdf" "20" "week" "http://purl.obolibrary.org/obo/UBERON_0001898" "hypothalamus" "{}" NA NA
"SAMEA4454500" "" "ENA" "SAMEA4454569" "ERA653275" "true" "[{\"year\":\"2020\",\"articleId\":\"PMC7089989\",\"journal\":\"Sci Rep\",\"title\":\"Systematic alteration of ATAC-seq for profiling open chromatin in cryopreserved nuclei preparations from livestock tissues.\"},{\"year\":\"2018\",\"articleId\":\"PMC6145346\",\"journal\":\"BMC Genomics\",\"title\":\"Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species.\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "ena-STUDY-UC DAVIS-07-06-2016-18:34:56:918-275" "Genome-wide Functional Annotation of Regulatory Elements in Livestock Species" "ERP015966" "PRJEB14330" "transcription profiling by high throughput sequencing" "polyA RNA" "ERX1534662" "ena-RUN-UC DAVIS-20-06-2016-17:24:08:820-32" "-121.7405" "UC DAVIS" "Illumina HiSeq 3000" "2015-05-11" "38.5449" "UC Davis Sequencing Center" "ILLUMINA" "ERR1464185" "Adipose" "[{\"value\":\"SRS3906965\",\"name\":\"SRA accession\"}]" "2020-05-19" "2016-06-05" "SAMEA4454500" "[]" "\"0c99d97399438eb7fc8d6eb102d808bfe\"" "FAANG" "[{\"URL\":\"http://www.ars.usda.gov/main/site_main.htm?modecode=50-50-10-00\",\"name\":\"USDA-ARS, Avian Disease and Oncology Laboratory\",\"role\":\"material supplier role \"}]" "[\"SAMEA4454569\"]" "SAMEA4454569" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "White Leghorn line 6x White Leghorn line 7" "http://purl.obolibrary.org/obo/LBO_0001037" "male" "PATO_0000384" "http://purl.obolibrary.org/obo/OBI_0001479" "specimen from organism" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "fed" "[]" "http://purl.obolibrary.org/obo/UBERON_0001013" "adipose tissue" "adult" "http://www.ebi.ac.uk/efo/EFO_0001272" "2015-01-22" "YYYY-MM-DD" "http://ftp.faang.ebi.ac.uk/ftp/protocols/samples/UCD_SOP_50_TissueCollection_20160520.pdf" "UCD_SOP_50_TissueCollection_20160520.pdf" "20" "week" "http://purl.obolibrary.org/obo/UBERON_0001013" "adipose tissue" "{}" NA NA
"SAMEA4454502" "" "ENA" "SAMEA4454495" "ERA653275" "true" "[{\"year\":\"2020\",\"articleId\":\"PMC7089989\",\"journal\":\"Sci Rep\",\"title\":\"Systematic alteration of ATAC-seq for profiling open chromatin in cryopreserved nuclei preparations from livestock tissues.\"},{\"year\":\"2018\",\"articleId\":\"PMC6145346\",\"journal\":\"BMC Genomics\",\"title\":\"Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species.\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "ena-STUDY-UC DAVIS-07-06-2016-18:34:56:918-275" "Genome-wide Functional Annotation of Regulatory Elements in Livestock Species" "ERP015966" "PRJEB14330" "transcription profiling by high throughput sequencing" "polyA RNA" "ERX1534673" "ena-RUN-UC DAVIS-20-06-2016-17:24:08:822-43" "-121.7405" "UC DAVIS" "Illumina HiSeq 3000" "2015-05-11" "38.5449" "UC Davis Sequencing Center" "ILLUMINA" "ERR1464196" "Lung" "[{\"value\":\"SRS3906976\",\"name\":\"SRA accession\"}]" "2020-05-19" "2016-06-05" "SAMEA4454502" "[]" "\"0d19c9676cdef480ec24fe393a8f593dc\"" "FAANG" "[{\"URL\":\"http://www.ars.usda.gov/main/site_main.htm?modecode=50-50-10-00\",\"name\":\"USDA-ARS, Avian Disease and Oncology Laboratory\",\"role\":\"material supplier role \"}]" "[\"SAMEA4454495\"]" "SAMEA4454495" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "White Leghorn line 6x White Leghorn line 7" "http://purl.obolibrary.org/obo/LBO_0001037" "male" "PATO_0000384" "http://purl.obolibrary.org/obo/OBI_0001479" "specimen from organism" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "fed" "[]" "http://purl.obolibrary.org/obo/UBERON_0002048" "lung" "adult" "http://www.ebi.ac.uk/efo/EFO_0001272" "2015-01-22" "YYYY-MM-DD" "http://ftp.faang.ebi.ac.uk/ftp/protocols/samples/UCD_SOP_50_TissueCollection_20160520.pdf" "UCD_SOP_50_TissueCollection_20160520.pdf" "20" "week" "http://purl.obolibrary.org/obo/UBERON_0002048" "lung" "{}" NA NA
"SAMEA4454503" "" "ENA" "SAMEA4454569" "ERA653275" "true" "[{\"year\":\"2020\",\"articleId\":\"PMC7089989\",\"journal\":\"Sci Rep\",\"title\":\"Systematic alteration of ATAC-seq for profiling open chromatin in cryopreserved nuclei preparations from livestock tissues.\"},{\"year\":\"2018\",\"articleId\":\"PMC6145346\",\"journal\":\"BMC Genomics\",\"title\":\"Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species.\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "ena-STUDY-UC DAVIS-07-06-2016-18:34:56:918-275" "Genome-wide Functional Annotation of Regulatory Elements in Livestock Species" "ERP015966" "PRJEB14330" "transcription profiling by high throughput sequencing" "polyA RNA" "ERX1534664" "ena-RUN-UC DAVIS-20-06-2016-17:24:08:820-34" "-121.7405" "UC DAVIS" "Illumina HiSeq 3000" "2015-05-11" "38.5449" "UC Davis Sequencing Center" "ILLUMINA" "ERR1464187" "Cerebellum" "[{\"value\":\"SRS3906967\",\"name\":\"SRA accession\"}]" "2020-05-19" "2016-06-05" "SAMEA4454503" "[]" "\"033f30505c48488b9e80774f7aee7dd8b\"" "FAANG" "[{\"URL\":\"http://www.ars.usda.gov/main/site_main.htm?modecode=50-50-10-00\",\"name\":\"USDA-ARS, Avian Disease and Oncology Laboratory\",\"role\":\"material supplier role \"}]" "[\"SAMEA4454569\"]" "SAMEA4454569" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "White Leghorn line 6x White Leghorn line 7" "http://purl.obolibrary.org/obo/LBO_0001037" "male" "PATO_0000384" "http://purl.obolibrary.org/obo/OBI_0001479" "specimen from organism" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "fed" "[]" "http://purl.obolibrary.org/obo/UBERON_0002037" "cerebellum" "adult" "http://www.ebi.ac.uk/efo/EFO_0001272" "2015-01-22" "YYYY-MM-DD" "http://ftp.faang.ebi.ac.uk/ftp/protocols/samples/UCD_SOP_50_TissueCollection_20160520.pdf" "UCD_SOP_50_TissueCollection_20160520.pdf" "20" "week" "http://purl.obolibrary.org/obo/UBERON_0002037" "cerebellum" "{}" NA NA
"SAMEA4454506" "" "ENA" "SAMEA4454569" "ERA653275" "true" "[{\"year\":\"2020\",\"articleId\":\"PMC7089989\",\"journal\":\"Sci Rep\",\"title\":\"Systematic alteration of ATAC-seq for profiling open chromatin in cryopreserved nuclei preparations from livestock tissues.\"},{\"year\":\"2018\",\"articleId\":\"PMC6145346\",\"journal\":\"BMC Genomics\",\"title\":\"Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species.\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "ena-STUDY-UC DAVIS-07-06-2016-18:34:56:918-275" "Genome-wide Functional Annotation of Regulatory Elements in Livestock Species" "ERP015966" "PRJEB14330" "transcription profiling by high throughput sequencing" "polyA RNA" "ERX1534676" "ena-RUN-UC DAVIS-20-06-2016-17:24:08:823-46" "-121.7405" "UC DAVIS" "Illumina HiSeq 3000" "2015-05-11" "38.5449" "UC Davis Sequencing Center" "ILLUMINA" "ERR1464199" "Spleen" "[{\"value\":\"SRS3906977\",\"name\":\"SRA accession\"}]" "2020-05-19" "2016-06-05" "SAMEA4454506" "[]" "\"005ed7f083de019f42781a8b3f66c5a17\"" "FAANG" "[{\"URL\":\"http://www.ars.usda.gov/main/site_main.htm?modecode=50-50-10-00\",\"name\":\"USDA-ARS, Avian Disease and Oncology Laboratory\",\"role\":\"material supplier role \"}]" "[\"SAMEA4454569\"]" "SAMEA4454569" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "White Leghorn line 6x White Leghorn line 7" "http://purl.obolibrary.org/obo/LBO_0001037" "male" "PATO_0000384" "http://purl.obolibrary.org/obo/OBI_0001479" "specimen from organism" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "fed" "[]" "http://purl.obolibrary.org/obo/UBERON_0002106" "spleen" "adult" "http://www.ebi.ac.uk/efo/EFO_0001272" "2015-01-22" "YYYY-MM-DD" "http://ftp.faang.ebi.ac.uk/ftp/protocols/samples/UCD_SOP_50_TissueCollection_20160520.pdf" "UCD_SOP_50_TissueCollection_20160520.pdf" "20" "week" "http://purl.obolibrary.org/obo/UBERON_0002106" "spleen" "{}" NA NA
"SAMEA4454513" "" "ENA" "SAMEA4454569" "ERA653275" "true" "[{\"year\":\"2020\",\"articleId\":\"PMC7089989\",\"journal\":\"Sci Rep\",\"title\":\"Systematic alteration of ATAC-seq for profiling open chromatin in cryopreserved nuclei preparations from livestock tissues.\"},{\"year\":\"2018\",\"articleId\":\"PMC6145346\",\"journal\":\"BMC Genomics\",\"title\":\"Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species.\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "ena-STUDY-UC DAVIS-07-06-2016-18:34:56:918-275" "Genome-wide Functional Annotation of Regulatory Elements in Livestock Species" "ERP015966" "PRJEB14330" "transcription profiling by high throughput sequencing" "polyA RNA" "ERX1534668" "ena-RUN-UC DAVIS-20-06-2016-17:24:08:821-38" "-121.7405" "UC DAVIS" "Illumina HiSeq 3000" "2015-05-11" "38.5449" "UC Davis Sequencing Center" "ILLUMINA" "ERR1464191" "Hypothalamus" "[{\"value\":\"SRS3906995\",\"name\":\"SRA accession\"}]" "2020-05-19" "2016-06-05" "SAMEA4454513" "[]" "\"01c1bee38bec799a0ebfc5c313b54f900\"" "FAANG" "[{\"URL\":\"http://www.ars.usda.gov/main/site_main.htm?modecode=50-50-10-00\",\"name\":\"USDA-ARS, Avian Disease and Oncology Laboratory\",\"role\":\"material supplier role \"}]" "[\"SAMEA4454569\"]" "SAMEA4454569" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "White Leghorn line 6x White Leghorn line 7" "http://purl.obolibrary.org/obo/LBO_0001037" "male" "PATO_0000384" "http://purl.obolibrary.org/obo/OBI_0001479" "specimen from organism" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "fed" "[]" "http://purl.obolibrary.org/obo/UBERON_0001898" "hypothalamus" "adult" "http://www.ebi.ac.uk/efo/EFO_0001272" "2015-01-22" "YYYY-MM-DD" "http://ftp.faang.ebi.ac.uk/ftp/protocols/samples/UCD_SOP_50_TissueCollection_20160520.pdf" "UCD_SOP_50_TissueCollection_20160520.pdf" "20" "week" "http://purl.obolibrary.org/obo/UBERON_0001898" "hypothalamus" "{}" NA NA
"SAMEA4454519" "" "ENA" "SAMEA4454569" "ERA653275" "true" "[{\"year\":\"2020\",\"articleId\":\"PMC7089989\",\"journal\":\"Sci Rep\",\"title\":\"Systematic alteration of ATAC-seq for profiling open chromatin in cryopreserved nuclei preparations from livestock tissues.\"},{\"year\":\"2018\",\"articleId\":\"PMC6145346\",\"journal\":\"BMC Genomics\",\"title\":\"Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species.\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "ena-STUDY-UC DAVIS-07-06-2016-18:34:56:918-275" "Genome-wide Functional Annotation of Regulatory Elements in Livestock Species" "ERP015966" "PRJEB14330" "transcription profiling by high throughput sequencing" "polyA RNA" "ERX1534672" "ena-RUN-UC DAVIS-20-06-2016-17:24:08:822-42" "-121.7405" "UC DAVIS" "Illumina HiSeq 3000" "2015-05-11" "38.5449" "UC Davis Sequencing Center" "ILLUMINA" "ERR1464195" "Lung" "[{\"value\":\"SRS3906972\",\"name\":\"SRA accession\"}]" "2020-05-19" "2016-06-05" "SAMEA4454519" "[]" "\"0245c3b5afd7d819e596210ced56eb268\"" "FAANG" "[{\"URL\":\"http://www.ars.usda.gov/main/site_main.htm?modecode=50-50-10-00\",\"name\":\"USDA-ARS, Avian Disease and Oncology Laboratory\",\"role\":\"material supplier role \"}]" "[\"SAMEA4454569\"]" "SAMEA4454569" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "White Leghorn line 6x White Leghorn line 7" "http://purl.obolibrary.org/obo/LBO_0001037" "male" "PATO_0000384" "http://purl.obolibrary.org/obo/OBI_0001479" "specimen from organism" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "fed" "[]" "http://purl.obolibrary.org/obo/UBERON_0002048" "lung" "adult" "http://www.ebi.ac.uk/efo/EFO_0001272" "2015-01-22" "YYYY-MM-DD" "http://ftp.faang.ebi.ac.uk/ftp/protocols/samples/UCD_SOP_50_TissueCollection_20160520.pdf" "UCD_SOP_50_TissueCollection_20160520.pdf" "20" "week" "http://purl.obolibrary.org/obo/UBERON_0002048" "lung" "{}" NA NA
"SAMEA4454537" "" "ENA" "SAMEA4454495" "ERA653275" "true" "[{\"year\":\"2020\",\"articleId\":\"PMC7089989\",\"journal\":\"Sci Rep\",\"title\":\"Systematic alteration of ATAC-seq for profiling open chromatin in cryopreserved nuclei preparations from livestock tissues.\"},{\"year\":\"2018\",\"articleId\":\"PMC6145346\",\"journal\":\"BMC Genomics\",\"title\":\"Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species.\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "ena-STUDY-UC DAVIS-07-06-2016-18:34:56:918-275" "Genome-wide Functional Annotation of Regulatory Elements in Livestock Species" "ERP015966" "PRJEB14330" "transcription profiling by high throughput sequencing" "polyA RNA" "ERX1534667" "ena-RUN-UC DAVIS-20-06-2016-17:24:08:821-37" "-121.7405" "UC DAVIS" "Illumina HiSeq 3000" "2015-05-11" "38.5449" "UC Davis Sequencing Center" "ILLUMINA" "ERR1464190" "Cortex" "[{\"value\":\"SRS3906969\",\"name\":\"SRA accession\"}]" "2020-05-19" "2016-06-05" "SAMEA4454537" "[]" "\"033cb36a7f74ca50d1fdc4ee508e4c41c\"" "FAANG" "[{\"URL\":\"http://www.ars.usda.gov/main/site_main.htm?modecode=50-50-10-00\",\"name\":\"USDA-ARS, Avian Disease and Oncology Laboratory\",\"role\":\"material supplier role \"}]" "[\"SAMEA4454495\"]" "SAMEA4454495" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "White Leghorn line 6x White Leghorn line 7" "http://purl.obolibrary.org/obo/LBO_0001037" "male" "PATO_0000384" "http://purl.obolibrary.org/obo/OBI_0001479" "specimen from organism" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "fed" "[]" "http://purl.obolibrary.org/obo/UBERON_0001851" "cortex" "adult" "http://www.ebi.ac.uk/efo/EFO_0001272" "2015-01-22" "YYYY-MM-DD" "http://ftp.faang.ebi.ac.uk/ftp/protocols/samples/UCD_SOP_50_TissueCollection_20160520.pdf" "UCD_SOP_50_TissueCollection_20160520.pdf" "20" "week" "http://purl.obolibrary.org/obo/UBERON_0001851" "cortex" "{}" NA NA
"SAMEA4454539" "" "ENA" "SAMEA4454495" "ERA653275" "true" "[{\"year\":\"2020\",\"articleId\":\"PMC7089989\",\"journal\":\"Sci Rep\",\"title\":\"Systematic alteration of ATAC-seq for profiling open chromatin in cryopreserved nuclei preparations from livestock tissues.\"},{\"year\":\"2018\",\"articleId\":\"PMC6145346\",\"journal\":\"BMC Genomics\",\"title\":\"Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species.\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "ena-STUDY-UC DAVIS-07-06-2016-18:34:56:918-275" "Genome-wide Functional Annotation of Regulatory Elements in Livestock Species" "ERP015966" "PRJEB14330" "transcription profiling by high throughput sequencing" "polyA RNA" "ERX1534671" "ena-RUN-UC DAVIS-20-06-2016-17:24:08:822-41" "-121.7405" "UC DAVIS" "Illumina HiSeq 3000" "2015-05-11" "38.5449" "UC Davis Sequencing Center" "ILLUMINA" "ERR1464194" "Liver" "[{\"value\":\"SRS3906973\",\"name\":\"SRA accession\"}]" "2020-05-19" "2016-06-05" "SAMEA4454539" "[]" "\"0f35d11a28520b1513e451054a66c83f7\"" "FAANG" "[{\"URL\":\"http://www.ars.usda.gov/main/site_main.htm?modecode=50-50-10-00\",\"name\":\"USDA-ARS, Avian Disease and Oncology Laboratory\",\"role\":\"material supplier role \"}]" "[\"SAMEA4454495\"]" "SAMEA4454495" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "White Leghorn line 6x White Leghorn line 7" "http://purl.obolibrary.org/obo/LBO_0001037" "male" "PATO_0000384" "http://purl.obolibrary.org/obo/OBI_0001479" "specimen from organism" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "fed" "[]" "http://purl.obolibrary.org/obo/UBERON_0002107" "liver" "adult" "http://www.ebi.ac.uk/efo/EFO_0001272" "2015-01-22" "YYYY-MM-DD" "http://ftp.faang.ebi.ac.uk/ftp/protocols/samples/UCD_SOP_50_TissueCollection_20160520.pdf" "UCD_SOP_50_TissueCollection_20160520.pdf" "20" "week" "http://purl.obolibrary.org/obo/UBERON_0002107" "liver" "{}" NA NA
"SAMEA4454557" "" "ENA" "SAMEA4454495" "ERA653275" "true" "[{\"year\":\"2020\",\"articleId\":\"PMC7089989\",\"journal\":\"Sci Rep\",\"title\":\"Systematic alteration of ATAC-seq for profiling open chromatin in cryopreserved nuclei preparations from livestock tissues.\"},{\"year\":\"2018\",\"articleId\":\"PMC6145346\",\"journal\":\"BMC Genomics\",\"title\":\"Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species.\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "ena-STUDY-UC DAVIS-07-06-2016-18:34:56:918-275" "Genome-wide Functional Annotation of Regulatory Elements in Livestock Species" "ERP015966" "PRJEB14330" "transcription profiling by high throughput sequencing" "polyA RNA" "ERX1534663" "ena-RUN-UC DAVIS-20-06-2016-17:24:08:820-33" "-121.7405" "UC DAVIS" "Illumina HiSeq 3000" "2015-05-11" "38.5449" "UC Davis Sequencing Center" "ILLUMINA" "ERR1464186" "Adipose" "[{\"value\":\"SRS3906964\",\"name\":\"SRA accession\"}]" "2020-05-19" "2016-06-05" "SAMEA4454557" "[]" "\"03abf1e183ef98bd319813dcada6ab2a1\"" "FAANG" "[{\"URL\":\"http://www.ars.usda.gov/main/site_main.htm?modecode=50-50-10-00\",\"name\":\"USDA-ARS, Avian Disease and Oncology Laboratory\",\"role\":\"material supplier role \"}]" "[\"SAMEA4454495\"]" "SAMEA4454495" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "White Leghorn line 6x White Leghorn line 7" "http://purl.obolibrary.org/obo/LBO_0001037" "male" "PATO_0000384" "http://purl.obolibrary.org/obo/OBI_0001479" "specimen from organism" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "fed" "[]" "http://purl.obolibrary.org/obo/UBERON_0001013" "adipose tissue" "adult" "http://www.ebi.ac.uk/efo/EFO_0001272" "2015-01-22" "YYYY-MM-DD" "http://ftp.faang.ebi.ac.uk/ftp/protocols/samples/UCD_SOP_50_TissueCollection_20160520.pdf" "UCD_SOP_50_TissueCollection_20160520.pdf" "20" "week" "http://purl.obolibrary.org/obo/UBERON_0001013" "adipose tissue" "{}" NA NA
"SAMEA4454560" "" "ENA" "SAMEA4454569" "ERA653275" "true" "[{\"year\":\"2020\",\"articleId\":\"PMC7089989\",\"journal\":\"Sci Rep\",\"title\":\"Systematic alteration of ATAC-seq for profiling open chromatin in cryopreserved nuclei preparations from livestock tissues.\"},{\"year\":\"2018\",\"articleId\":\"PMC6145346\",\"journal\":\"BMC Genomics\",\"title\":\"Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species.\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "ena-STUDY-UC DAVIS-07-06-2016-18:34:56:918-275" "Genome-wide Functional Annotation of Regulatory Elements in Livestock Species" "ERP015966" "PRJEB14330" "transcription profiling by high throughput sequencing" "polyA RNA" "ERX1534670" "ena-RUN-UC DAVIS-20-06-2016-17:24:08:822-40" "-121.7405" "UC DAVIS" "Illumina HiSeq 3000" "2015-05-11" "38.5449" "UC Davis Sequencing Center" "ILLUMINA" "ERR1464193" "Liver" "[{\"value\":\"SRS3906971\",\"name\":\"SRA accession\"}]" "2020-05-19" "2016-06-05" "SAMEA4454560" "[]" "\"02c32e5a538bf38d7d9117d18de2c3abc\"" "FAANG" "[{\"URL\":\"http://www.ars.usda.gov/main/site_main.htm?modecode=50-50-10-00\",\"name\":\"USDA-ARS, Avian Disease and Oncology Laboratory\",\"role\":\"material supplier role \"}]" "[\"SAMEA4454569\"]" "SAMEA4454569" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "White Leghorn line 6x White Leghorn line 7" "http://purl.obolibrary.org/obo/LBO_0001037" "male" "PATO_0000384" "http://purl.obolibrary.org/obo/OBI_0001479" "specimen from organism" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "fed" "[]" "http://purl.obolibrary.org/obo/UBERON_0002107" "liver" "adult" "http://www.ebi.ac.uk/efo/EFO_0001272" "2015-01-22" "YYYY-MM-DD" "http://ftp.faang.ebi.ac.uk/ftp/protocols/samples/UCD_SOP_50_TissueCollection_20160520.pdf" "UCD_SOP_50_TissueCollection_20160520.pdf" "20" "week" "http://purl.obolibrary.org/obo/UBERON_0002107" "liver" "{}" NA NA
"SAMEA4454568" "" "ENA" "SAMEA4454569" "ERA653275" "true" "[{\"year\":\"2020\",\"articleId\":\"PMC7089989\",\"journal\":\"Sci Rep\",\"title\":\"Systematic alteration of ATAC-seq for profiling open chromatin in cryopreserved nuclei preparations from livestock tissues.\"},{\"year\":\"2018\",\"articleId\":\"PMC6145346\",\"journal\":\"BMC Genomics\",\"title\":\"Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species.\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "ena-STUDY-UC DAVIS-07-06-2016-18:34:56:918-275" "Genome-wide Functional Annotation of Regulatory Elements in Livestock Species" "ERP015966" "PRJEB14330" "transcription profiling by high throughput sequencing" "polyA RNA" "ERX1534666" "ena-RUN-UC DAVIS-20-06-2016-17:24:08:821-36" "-121.7405" "UC DAVIS" "Illumina HiSeq 3000" "2015-05-11" "38.5449" "UC Davis Sequencing Center" "ILLUMINA" "ERR1464189" "Cortex" "[{\"value\":\"SRS3906968\",\"name\":\"SRA accession\"}]" "2020-05-19" "2016-06-05" "SAMEA4454568" "[]" "\"06c8311e608636b0a03b6eec629e0b086\"" "FAANG" "[{\"URL\":\"http://www.ars.usda.gov/main/site_main.htm?modecode=50-50-10-00\",\"name\":\"USDA-ARS, Avian Disease and Oncology Laboratory\",\"role\":\"material supplier role \"}]" "[\"SAMEA4454569\"]" "SAMEA4454569" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "White Leghorn line 6x White Leghorn line 7" "http://purl.obolibrary.org/obo/LBO_0001037" "male" "PATO_0000384" "http://purl.obolibrary.org/obo/OBI_0001479" "specimen from organism" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "fed" "[]" "http://purl.obolibrary.org/obo/UBERON_0001851" "cortex" "adult" "http://www.ebi.ac.uk/efo/EFO_0001272" "2015-01-22" "YYYY-MM-DD" "http://ftp.faang.ebi.ac.uk/ftp/protocols/samples/UCD_SOP_50_TissueCollection_20160520.pdf" "UCD_SOP_50_TissueCollection_20160520.pdf" "20" "week" "http://purl.obolibrary.org/obo/UBERON_0001851" "cortex" "{}" NA NA
"SAMEA4455401" "" "ENA" "SAMEA4454495" "ERA653275" "true" "[{\"year\":\"2020\",\"articleId\":\"PMC7089989\",\"journal\":\"Sci Rep\",\"title\":\"Systematic alteration of ATAC-seq for profiling open chromatin in cryopreserved nuclei preparations from livestock tissues.\"},{\"year\":\"2018\",\"articleId\":\"PMC6145346\",\"journal\":\"BMC Genomics\",\"title\":\"Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species.\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "ena-STUDY-UC DAVIS-07-06-2016-18:34:56:918-275" "Genome-wide Functional Annotation of Regulatory Elements in Livestock Species" "ERP015966" "PRJEB14330" "transcription profiling by high throughput sequencing" "polyA RNA" "ERX1534675" "ena-RUN-UC DAVIS-20-06-2016-17:24:08:823-45" "-121.7405" "UC DAVIS" "Illumina HiSeq 3000" "2015-05-11" "38.5449" "UC Davis Sequencing Center" "ILLUMINA" "ERR1464198" "Skeletal Muscle" "[{\"value\":\"SRS3906975\",\"name\":\"SRA accession\"}]" "2020-05-19" "2016-06-05" "SAMEA4455401" "[]" "\"07e9e8ff113532e6e7e5c75ec11bd67bc\"" "FAANG" "[{\"URL\":\"http://www.ars.usda.gov/main/site_main.htm?modecode=50-50-10-00\",\"name\":\"USDA-ARS, Avian Disease and Oncology Laboratory\",\"role\":\"material supplier role \"}]" "[\"SAMEA4454495\"]" "SAMEA4454495" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "White Leghorn line 6x White Leghorn line 7" "http://purl.obolibrary.org/obo/LBO_0001037" "male" "PATO_0000384" "http://purl.obolibrary.org/obo/OBI_0001479" "specimen from organism" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "fed" "[]" "http://purl.obolibrary.org/obo/UBERON_0001134" "skeletal muscle tissue" "adult" "http://www.ebi.ac.uk/efo/EFO_0001272" "2015-01-22" "YYYY-MM-DD" "http://ftp.faang.ebi.ac.uk/ftp/protocols/samples/UCD_SOP_50_TissueCollection_20160520.pdf" "UCD_SOP_50_TissueCollection_20160520.pdf" "20" "week" "http://purl.obolibrary.org/obo/UBERON_0001134" "skeletal muscle tissue" "{}" NA NA
"SAMEA4455402" "" "ENA" "SAMEA4454569" "ERA653275" "true" "[{\"year\":\"2020\",\"articleId\":\"PMC7089989\",\"journal\":\"Sci Rep\",\"title\":\"Systematic alteration of ATAC-seq for profiling open chromatin in cryopreserved nuclei preparations from livestock tissues.\"},{\"year\":\"2018\",\"articleId\":\"PMC6145346\",\"journal\":\"BMC Genomics\",\"title\":\"Genome-wide identification of tissue-specific long non-coding RNA in three farm animal species.\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "ena-STUDY-UC DAVIS-07-06-2016-18:34:56:918-275" "Genome-wide Functional Annotation of Regulatory Elements in Livestock Species" "ERP015966" "PRJEB14330" "transcription profiling by high throughput sequencing" "polyA RNA" "ERX1534674" "ena-RUN-UC DAVIS-20-06-2016-17:24:08:823-44" "-121.7405" "UC DAVIS" "Illumina HiSeq 3000" "2015-05-11" "38.5449" "UC Davis Sequencing Center" "ILLUMINA" "ERR1464197" "Skeletal Muscle" "[{\"value\":\"SRS3906974\",\"name\":\"SRA accession\"}]" "2020-05-19" "2016-06-05" "SAMEA4455402" "[]" "\"05e4603352598427b85e7d266e5d262b6\"" "FAANG" "[{\"URL\":\"http://www.ars.usda.gov/main/site_main.htm?modecode=50-50-10-00\",\"name\":\"USDA-ARS, Avian Disease and Oncology Laboratory\",\"role\":\"material supplier role \"}]" "[\"SAMEA4454569\"]" "SAMEA4454569" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "http://purl.obolibrary.org/obo/NCBITaxon_9031" "Gallus gallus" "White Leghorn line 6x White Leghorn line 7" "http://purl.obolibrary.org/obo/LBO_0001037" "male" "PATO_0000384" "http://purl.obolibrary.org/obo/OBI_0001479" "specimen from organism" "[{\"ontologyTerms\":\"http://purl.obolibrary.org/obo/PATO_0000461\",\"text\":\"normal\"}]" "fed" "[]" "http://purl.obolibrary.org/obo/UBERON_0001134" "skeletal muscle tissue" "adult" "http://www.ebi.ac.uk/efo/EFO_0001272" "2015-01-22" "YYYY-MM-DD" "http://ftp.faang.ebi.ac.uk/ftp/protocols/samples/UCD_SOP_50_TissueCollection_20160520.pdf" "UCD_SOP_50_TissueCollection_20160520.pdf" "20" "week" "http://purl.obolibrary.org/obo/UBERON_0001134" "skeletal muscle tissue" "{}" NA NA
Django/assets/Sus_scrofa/metadata.tsv 0 → 100644
View file @ f5b2765d
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Django/assets/admin/css/autocomplete.css 0 → 100644
View file @ f5b2765d
select.admin-autocomplete {
width: 20em;
}
.select2-container--admin-autocomplete.select2-container {
min-height: 30px;
}
.select2-container--admin-autocomplete .select2-selection--single,
.select2-container--admin-autocomplete .select2-selection--multiple {
min-height: 30px;
padding: 0;
}
.select2-container--admin-autocomplete.select2-container--focus .select2-selection,
.select2-container--admin-autocomplete.select2-container--open .select2-selection {
border-color: #999;
min-height: 30px;
}
.select2-container--admin-autocomplete.select2-container--focus .select2-selection.select2-selection--single,
.select2-container--admin-autocomplete.select2-container--open .select2-selection.select2-selection--single {
padding: 0;
}
.select2-container--admin-autocomplete.select2-container--focus .select2-selection.select2-selection--multiple,
.select2-container--admin-autocomplete.select2-container--open .select2-selection.select2-selection--multiple {
padding: 0;
}
.select2-container--admin-autocomplete .select2-selection--single {
background-color: #fff;
border: 1px solid #ccc;
border-radius: 4px;
}
.select2-container--admin-autocomplete .select2-selection--single .select2-selection__rendered {
color: #444;
line-height: 30px;
}
.select2-container--admin-autocomplete .select2-selection--single .select2-selection__clear {
cursor: pointer;
float: right;
font-weight: bold;
}
.select2-container--admin-autocomplete .select2-selection--single .select2-selection__placeholder {
color: #999;
}
.select2-container--admin-autocomplete .select2-selection--single .select2-selection__arrow {
height: 26px;
position: absolute;
top: 1px;
right: 1px;
width: 20px;
}
.select2-container--admin-autocomplete .select2-selection--single .select2-selection__arrow b {
border-color: #888 transparent transparent transparent;
border-style: solid;
border-width: 5px 4px 0 4px;
height: 0;
left: 50%;
margin-left: -4px;
margin-top: -2px;
position: absolute;
top: 50%;
width: 0;
}
.select2-container--admin-autocomplete[dir="rtl"] .select2-selection--single .select2-selection__clear {
float: left;
}
.select2-container--admin-autocomplete[dir="rtl"] .select2-selection--single .select2-selection__arrow {
left: 1px;
right: auto;
}
.select2-container--admin-autocomplete.select2-container--disabled .select2-selection--single {
background-color: #eee;
cursor: default;
}
.select2-container--admin-autocomplete.select2-container--disabled .select2-selection--single .select2-selection__clear {
display: none;
}
.select2-container--admin-autocomplete.select2-container--open .select2-selection--single .select2-selection__arrow b {
border-color: transparent transparent #888 transparent;
border-width: 0 4px 5px 4px;
}
.select2-container--admin-autocomplete .select2-selection--multiple {
background-color: white;
border: 1px solid #ccc;
border-radius: 4px;
cursor: text;
}
.select2-container--admin-autocomplete .select2-selection--multiple .select2-selection__rendered {
box-sizing: border-box;
list-style: none;
margin: 0;
padding: 0 5px;
width: 100%;
}
.select2-container--admin-autocomplete .select2-selection--multiple .select2-selection__rendered li {
list-style: none;
}
.select2-container--admin-autocomplete .select2-selection--multiple .select2-selection__placeholder {
color: #999;
margin-top: 5px;
float: left;
}
.select2-container--admin-autocomplete .select2-selection--multiple .select2-selection__clear {
cursor: pointer;
float: right;
font-weight: bold;
margin: 5px;
}
.select2-container--admin-autocomplete .select2-selection--multiple .select2-selection__choice {
background-color: #e4e4e4;
border: 1px solid #ccc;
border-radius: 4px;
cursor: default;
float: left;
margin-right: 5px;
margin-top: 5px;
padding: 0 5px;
}
.select2-container--admin-autocomplete .select2-selection--multiple .select2-selection__choice__remove {
color: #999;
cursor: pointer;
display: inline-block;
font-weight: bold;
margin-right: 2px;
}
.select2-container--admin-autocomplete .select2-selection--multiple .select2-selection__choice__remove:hover {
color: #333;
}
.select2-container--admin-autocomplete[dir="rtl"] .select2-selection--multiple .select2-selection__choice, .select2-container--admin-autocomplete[dir="rtl"] .select2-selection--multiple .select2-selection__placeholder, .select2-container--admin-autocomplete[dir="rtl"] .select2-selection--multiple .select2-search--inline {
float: right;
}
.select2-container--admin-autocomplete[dir="rtl"] .select2-selection--multiple .select2-selection__choice {
margin-left: 5px;
margin-right: auto;
}
.select2-container--admin-autocomplete[dir="rtl"] .select2-selection--multiple .select2-selection__choice__remove {
margin-left: 2px;
margin-right: auto;
}
.select2-container--admin-autocomplete.select2-container--focus .select2-selection--multiple {
border: solid #999 1px;
outline: 0;
}
.select2-container--admin-autocomplete.select2-container--disabled .select2-selection--multiple {
background-color: #eee;
cursor: default;
}
.select2-container--admin-autocomplete.select2-container--disabled .select2-selection__choice__remove {
display: none;
}
.select2-container--admin-autocomplete.select2-container--open.select2-container--above .select2-selection--single, .select2-container--admin-autocomplete.select2-container--open.select2-container--above .select2-selection--multiple {
border-top-left-radius: 0;
border-top-right-radius: 0;
}
.select2-container--admin-autocomplete.select2-container--open.select2-container--below .select2-selection--single, .select2-container--admin-autocomplete.select2-container--open.select2-container--below .select2-selection--multiple {
border-bottom-left-radius: 0;
border-bottom-right-radius: 0;
}
.select2-container--admin-autocomplete .select2-search--dropdown .select2-search__field {
border: 1px solid #ccc;
}
.select2-container--admin-autocomplete .select2-search--inline .select2-search__field {
background: transparent;
border: none;
outline: 0;
box-shadow: none;
-webkit-appearance: textfield;
}
.select2-container--admin-autocomplete .select2-results > .select2-results__options {
max-height: 200px;
overflow-y: auto;
}
.select2-container--admin-autocomplete .select2-results__option[role=group] {
padding: 0;
}
.select2-container--admin-autocomplete .select2-results__option[aria-disabled=true] {
color: #999;
}
.select2-container--admin-autocomplete .select2-results__option[aria-selected=true] {
background-color: #ddd;
}
.select2-container--admin-autocomplete .select2-results__option .select2-results__option {
padding-left: 1em;
}
.select2-container--admin-autocomplete .select2-results__option .select2-results__option .select2-results__group {
padding-left: 0;
}
.select2-container--admin-autocomplete .select2-results__option .select2-results__option .select2-results__option {
margin-left: -1em;
padding-left: 2em;
}
.select2-container--admin-autocomplete .select2-results__option .select2-results__option .select2-results__option .select2-results__option {
margin-left: -2em;
padding-left: 3em;
}
.select2-container--admin-autocomplete .select2-results__option .select2-results__option .select2-results__option .select2-results__option .select2-results__option {
margin-left: -3em;
padding-left: 4em;
}
.select2-container--admin-autocomplete .select2-results__option .select2-results__option .select2-results__option .select2-results__option .select2-results__option .select2-results__option {
margin-left: -4em;
padding-left: 5em;
}
.select2-container--admin-autocomplete .select2-results__option .select2-results__option .select2-results__option .select2-results__option .select2-results__option .select2-results__option .select2-results__option {
margin-left: -5em;
padding-left: 6em;
}
.select2-container--admin-autocomplete .select2-results__option--highlighted[aria-selected] {
background-color: #79aec8;
color: white;
}
.select2-container--admin-autocomplete .select2-results__group {
cursor: default;
display: block;
padding: 6px;
}
Django/assets/admin/css/base.css 0 → 100644
View file @ f5b2765d
/*
DJANGO Admin styles
*/
@import url(fonts.css);
html, body {
height: 100%;
}
body {
margin: 0;
padding: 0;
font-size: 14px;
font-family: "Roboto","Lucida Grande","DejaVu Sans","Bitstream Vera Sans",Verdana,Arial,sans-serif;
color: #333;
background: #fff;
}
/* LINKS */
a:link, a:visited {
color: #447e9b;
text-decoration: none;
}
a:focus, a:hover {
color: #036;
}
a:focus {
text-decoration: underline;
}
a img {
border: none;
}
a.section:link, a.section:visited {
color: #fff;
text-decoration: none;
}
a.section:focus, a.section:hover {
text-decoration: underline;
}
/* GLOBAL DEFAULTS */
p, ol, ul, dl {
margin: .2em 0 .8em 0;
}
p {
padding: 0;