From fdddd1826c98abd3c3443f71ca4bfe3bdf7a5f40 Mon Sep 17 00:00:00 2001
From: Skander Hatira <skander.hatira@inrae.fr>
Date: Fri, 3 Dec 2021 11:54:32 +0100
Subject: [PATCH] corrected database accession for comparisons context and
validated remote exec
---
src/backend/models/Comparison.js | 2 +-
src/backend/routes/api/comparisonController.js | 4 ++--
src/components/Visualization/VisualizationFill.js | 1 +
3 files changed, 4 insertions(+), 3 deletions(-)
diff --git a/src/backend/models/Comparison.js b/src/backend/models/Comparison.js
index 2c8f967..eecee76 100644
--- a/src/backend/models/Comparison.js
+++ b/src/backend/models/Comparison.js
@@ -24,7 +24,7 @@ const comparisonSchema = new Schema({
qValue: { type: Number, required: false },
minCov: { type: Number, required: false },
minDiff: { type: Number, required: false },
- context: [{ type: String, required: false }],
+ contexts: [{ type: String, required: false }],
species: { type: String, required: false },
remote: { type: Boolean, required: false },
cluster: { type: Boolean, required: false },
diff --git a/src/backend/routes/api/comparisonController.js b/src/backend/routes/api/comparisonController.js
index be804f8..7c99f86 100644
--- a/src/backend/routes/api/comparisonController.js
+++ b/src/backend/routes/api/comparisonController.js
@@ -57,7 +57,7 @@ router.post("/comparison", (req, res) => {
qValue: req.body.pValueThreshold,
minCov: req.body.minReadsPerCytosine,
minDiff: req.body.minProportionDifference,
- context: req.body.contexts,
+ contexts: req.body.contexts,
species: req.body.species,
machine: req.body.machine,
comparisons: req.body.comparisons,
@@ -127,7 +127,7 @@ router.post("/comparison", (req, res) => {
qValue: req.body.pValueThreshold,
minCov: req.body.minReadsPerCytosine,
minDiff: req.body.minProportionDifference,
- context: req.body.contexts,
+ contexts: req.body.contexts,
species: req.body.species,
machine: req.body.machine,
comparisons: req.body.comparisons,
diff --git a/src/components/Visualization/VisualizationFill.js b/src/components/Visualization/VisualizationFill.js
index 6ecf37c..8deed91 100644
--- a/src/components/Visualization/VisualizationFill.js
+++ b/src/components/Visualization/VisualizationFill.js
@@ -188,6 +188,7 @@ export default function VisualizationFill() {
return false;
}
};
+ console.log(comp);
const downloadFiles = (row, tracks) => {
let sftp = new Client();
--
GitLab