diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index eb94221752a960bda5162daa47151554e148cdbb..6b5a7fea7f7f90bfbfff635560290a3aeeb0b2d7 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -23,11 +23,11 @@ create-env: stage: create-env script: - cd $CI_PROJECT_DIR/ - - /opt/conda/bin/conda config --set always_yes yes --set changeps1 no --set add_pip_as_python_dependency no - - /opt/conda/bin/conda env create -n snakemake -f resources/snakeMinimal.yaml + - /opt/conda/bin/conda config --set always_yes yes --set changeps1 no --set add_pip_as_python_dependency no + - /opt/conda/bin/conda env create -n snakemake -f resources/snakeMinimal.yaml - /opt/conda/bin/conda env create -n mongo -f resources/mongodb.yaml - - /opt/conda/bin/conda run -n snakemake conda pack -n snakemake - - /opt/conda/bin/conda run -n mongo conda pack -n mongo + - /opt/conda/bin/conda run -n snakemake conda pack -n snakemake + - /opt/conda/bin/conda run -n mongo conda pack -n mongo - tar -xf snakemake.tar.gz -C resources/snakemake/ - tar -xf mongo.tar.gz -C resources/database/mongo artifacts: