amelioration du texte de log

Nextflow/03workflow_module/module.Nworkflow.nf

@@ -27,5 +27,7 @@ workflow gzipw {
 
 workflow {
 	gunzipw(chanFastq)
+	gunzipw.out.outfile.view { "[gunzip sub-workflow output] " + it }
+
 	gzipw(gunzipw.out.outfile)
 }

Nextflow/03workflow_module/module.simple.nf

@@ -6,4 +6,5 @@ chanFastq = Channel.fromFilePairs( './rawdata/dev/control/SRR*_{1,2}.fastq.gz',
 
 workflow {
 	gunzip(chanFastq)
+	gunzip.out.outfile.view { "[process output] " + it }
 }

Nextflow/03workflow_module/module/gzip/main.nf

 nextflow.enable.dsl=2
 
 process gunzip {
-	publishDir('result')
+	publishDir('result/module/gunzip')
 	tag("${id}")
 
 	input:
@@ -11,6 +11,7 @@ process gunzip {
 	path('*.fastq', emit: outfile)
 
 	script:
+	println("[module gunzip] fastqID: $id")
 	"""
 #!/usr/bin/env bash
 gzip -kcd ${reads[0]} > ${id}.R1.fastq
@@ -19,7 +20,7 @@ touch myfile
 }
 
 process gzip {
-    publishDir('result')
+    publishDir('result/module/gzip')
     tag("${id}")
 
     input:
@@ -29,6 +30,7 @@ process gzip {
     path('*.fastq.gz')
 
     script:
+    println("[module gzip] fastq: $reads")
     """
 #!/usr/bin/env bash
 gzip -kc ${reads} > ${reads}.gz