Commit 069a1a5c authored by Frederique Bitton's avatar Frederique Bitton
Browse files

Delete config_para_TE.yaml

parent de23ae7d
Pipeline #42459 passed with stage
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tmp_dir: ""
gff_file_ref : "data/Col0_classic_refTEs_withoutOtherTargets_test.gff"
gff_file_sub : "data/TAIR10_gene_test.gff3"
chr_list : "data/Ath_chrs.txt"
# singularity images location
fastqc_bin : "/work2/project/gafl/tools/containers/fastqc_V0.11.8.sif"
multiqc_bin : "/work2/project/gafl/tools/containers/multiqc_v1.7.sif"
cutadapt_bin : "/work2/project/gafl/tools/containers/cutadapt_v2.7.sif"
fastp_bin : "/work2/project/gafl/tools/containers/fastp_0.20.0.sif"
samtools_bin : "/work2/project/gafl/tools/containers/samtools_v1.9.sif"
bwa_bin : "/work2/project/gafl/tools/containers/bwa_0.7.17.sif"
sambamba_bin : "/work2/project/gafl/tools/containers/sambamba_v0.7.1.sif"
gatk4_bin : "/work2/project/gafl/tools/containers/gatk4_v4.1.4.1.sif"
R_bin : "/work2/project/gafl/tools/containers/R_base_V3.6.0.sif"
# bind Genotoul:
#BIND : "-B /work2/project/gafl,/work2/project/pangenometomate/"
# singularity modules only for genotoul
#MODULES : "module load system/singularity-3.5.3"
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