diff --git a/data/data_test.csv b/data/data_test.csv index 46ebd4973dfd15a8a8761c6451a2882d41581951..d0c28ce4c520a40d82d832d66e8ba58387b3ae52 100644 --- a/data/data_test.csv +++ b/data/data_test.csv @@ -3245,57 +3245,57 @@ 3243,Chr01,MD01G1003700,unique homolog,Multiple TE,4,518 3244,Chr01,MD01G1003800,multiple homolog,Multiple TE,5,498 3245,Chr01,MD01G1003900,multiple homolog,Multiple TE,7,501 -3246,Chr01,MD01G1004000,unique homolog,Multiple TE,4,495 +3246,Chr01,MD01G1004000,multiple homolog,Multiple TE,4,495 3247,Chr01,MD01G1004100,multiple homolog,Multiple TE,4,508 -3248,Chr01,MD01G1004200,unique homolog,Multiple TE,5,483 -3249,Chr01,MD01G1004300,unique homolog,Multiple TE,4,489 +3248,Chr01,MD01G1004200,multiple homolog,Multiple TE,5,483 +3249,Chr01,MD01G1004300,multiple homolog,Multiple TE,4,489 3250,Chr01,MD01G1004400,multiple homolog,Multiple TE,4,513 3251,Chr01,MD01G1004500,multiple homolog,Multiple TE,3,517 -3252,Chr01,MD01G1004600,unique homolog,Multiple TE,4,464 +3252,Chr01,MD01G1004600,multiple homolog,Multiple TE,4,464 3253,Chr01,MD01G1004700,multiple homolog,Multiple TE,6,518 -3254,Chr01,MD01G1004800,unique homolog,Multiple TE,6,501 -3255,Chr01,MD01G1004900,unique homolog,Multiple TE,4,488 +3254,Chr01,MD01G1004800,multiple homolog,Multiple TE,6,501 +3255,Chr01,MD01G1004900,multiple homolog,Multiple TE,4,488 3256,Chr01,MD01G1005000,multiple homolog,Multiple TE,2,500 3257,Chr01,MD01G1005100,multiple homolog,Multiple TE,6,517 -3258,Chr01,MD01G1005200,unique homolog,Multiple TE,7,509 +3258,Chr01,MD01G1005200,multiple homolog,Multiple TE,7,509 3259,Chr01,MD01G1005300,multiple homolog,Multiple TE,4,486 -3260,Chr01,MD01G1005400,unique homolog,Multiple TE,6,491 -3261,Chr01,MD01G1005500,unique homolog,Multiple TE,5,484 +3260,Chr01,MD01G1005400,multiple homolog,Multiple TE,6,491 +3261,Chr01,MD01G1005500,multiple homolog,Multiple TE,5,484 3262,Chr01,MD01G1005600,multiple homolog,Multiple TE,4,489 3263,Chr01,MD01G1005700,multiple homolog,Multiple TE,6,504 -3264,Chr01,MD01G1005800,unique homolog,Multiple TE,3,512 +3264,Chr01,MD01G1005800,multiple homolog,Multiple TE,3,512 3265,Chr01,MD01G1005900,multiple homolog,Multiple TE,7,496 3266,Chr01,MD01G1006000,multiple homolog,Multiple TE,2,514 -3267,Chr01,MD01G1006100,unique homolog,Multiple TE,5,511 +3267,Chr01,MD01G1006100,multiple homolog,Multiple TE,5,511 3268,Chr01,MD01G1006200,multiple homolog,Multiple TE,4,502 3269,Chr01,MD01G1006300,multiple homolog,Multiple TE,6,495 -3270,Chr01,MD01G1006400,unique homolog,Multiple TE,5,498 +3270,Chr01,MD01G1006400,multiple homolog,Multiple TE,5,498 3271,Chr01,MD01G1006500,multiple homolog,Multiple TE,4,512 -3272,Chr01,MD01G1006600,unique homolog,Multiple TE,7,493 -3273,Chr01,MD01G1006700,unique homolog,Multiple TE,5,506 +3272,Chr01,MD01G1006600,multiple homolog,Multiple TE,7,493 +3273,Chr01,MD01G1006700,multiple homolog,Multiple TE,5,506 3274,Chr01,MD01G1006800,multiple homolog,Multiple TE,5,504 3275,Chr01,MD01G1006900,multiple homolog,Multiple TE,6,498 -3276,Chr01,MD01G1007000,unique homolog,Multiple TE,5,507 +3276,Chr01,MD01G1007000,multiple homolog,Multiple TE,5,507 3277,Chr01,MD01G1007100,multiple homolog,Multiple TE,6,504 3278,Chr01,MD01G1007200,multiple homolog,Multiple TE,3,497 -3279,Chr01,MD01G1007300,unique homolog,Multiple TE,2,531 +3279,Chr01,MD01G1007300,multiple homolog,Multiple TE,2,531 3280,Chr01,MD01G1007400,multiple homolog,Multiple TE,6,497 3281,Chr01,MD01G1007500,multiple homolog,Multiple TE,5,513 -3282,Chr01,MD01G1007600,unique homolog,Multiple TE,3,487 +3282,Chr01,MD01G1007600,multiple homolog,Multiple TE,3,487 3283,Chr01,MD01G1007700,multiple homolog,Multiple TE,7,539 3284,Chr01,MD01G1007800,singleton,Multiple TE,4,494 3285,Chr01,MD01G1007900,singleton,Multiple TE,2,494 3286,Chr01,MD01G1008000,multiple homolog,Multiple TE,5,490 3287,Chr01,MD01G1008100,multiple homolog,Multiple TE,2,516 -3288,Chr01,MD01G1008200,unique homolog,Multiple TE,3,495 +3288,Chr01,MD01G1008200,multiple homolog,Multiple TE,3,495 3289,Chr01,MD01G1008300,multiple homolog,Multiple TE,6,516 3290,Chr01,MD01G1008400,multiple homolog,Multiple TE,4,495 -3291,Chr01,MD01G1008500,unique homolog,Multiple TE,5,527 +3291,Chr01,MD01G1008500,multiple homolog,Multiple TE,5,527 3292,Chr01,MD01G1008600,multiple homolog,Multiple TE,5,510 3293,Chr01,MD01G1008700,multiple homolog,Multiple TE,3,521 -3294,Chr01,MD01G1008800,unique homolog,Multiple TE,6,491 +3294,Chr01,MD01G1008800,multiple homolog,Multiple TE,6,491 3295,Chr01,MD01G1008900,multiple homolog,Multiple TE,4,476 -3296,Chr01,MD01G1009000,unique homolog,Multiple TE,4,491 +3296,Chr01,MD01G1009000,multiple homolog,Multiple TE,4,491 3297,Chr01,MD01G1009100,unique homolog,Multiple TE,3,512 3298,Chr01,MD01G1009200,multiple homolog,Multiple TE,5,485 3299,Chr01,MD01G1009300,multiple homolog,Multiple TE,5,499 @@ -3315,13 +3315,13 @@ 3313,Chr01,MD01G1010700,multiple homolog,Multiple TE,2,498 3314,Chr01,MD01G1010800,multiple homolog,Multiple TE,3,502 3315,Chr01,MD01G1010900,unique homolog,Multiple TE,2,500 -3316,Chr01,MD01G1011000,multiple homolog,Multiple TE,4,499 -3317,Chr01,MD01G1011100,multiple homolog,Multiple TE,3,520 +3316,Chr01,MD01G1011000,singleton,Multiple TE,4,499 +3317,Chr01,MD01G1011100,singleton,Multiple TE,3,520 3318,Chr01,MD01G1011200,unique homolog,Multiple TE,5,484 -3319,Chr01,MD01G1011300,multiple homolog,Multiple TE,4,492 +3319,Chr01,MD01G1011300,singleton,Multiple TE,4,492 3320,Chr01,MD01G1011400,unique homolog,Multiple TE,4,513 3321,Chr01,MD01G1011500,unique homolog,Multiple TE,3,501 -3322,Chr01,MD01G1011600,multiple homolog,Multiple TE,5,516 +3322,Chr01,MD01G1011600,singleton,Multiple TE,5,516 3323,Chr01,MD01G1011700,multiple homolog,Multiple TE,4,493 3324,Chr01,MD01G1011800,unique homolog,Multiple TE,6,513 3325,Chr01,MD01G1011900,multiple homolog,Multiple TE,5,502 @@ -3331,7 +3331,7 @@ 3329,Chr01,MD01G1012300,multiple homolog,Multiple TE,7,481 3330,Chr01,MD01G1012400,unique homolog,Multiple TE,4,526 3331,Chr01,MD01G1012500,multiple homolog,Multiple TE,2,512 -3332,Chr01,MD01G1012600,singleton,Multiple TE,4,476 +3332,Chr01,MD01G1012600,multiple homolog,Multiple TE,4,476 3333,Chr01,MD01G1012700,unique homolog,Multiple TE,5,489 3334,Chr01,MD01G1012800,multiple homolog,Multiple TE,7,508 3335,Chr01,MD01G1012900,multiple homolog,Multiple TE,5,507 @@ -3389,147 +3389,147 @@ 3387,Chr01,MD01G1018100,unique homolog,Multiple TE,5,494 3388,Chr01,MD01G1018200,multiple homolog,Multiple TE,6,499 3389,Chr01,MD01G1018300,multiple homolog,Multiple TE,6,482 -3390,Chr01,MD01G1018400,unique homolog,Multiple TE,3,503 +3390,Chr01,MD01G1018400,multiple homolog,Multiple TE,3,503 3391,Chr01,MD01G1018500,multiple homolog,Multiple TE,6,507 -3392,Chr01,MD01G1018600,unique homolog,Multiple TE,7,520 -3393,Chr01,MD01G1018700,unique homolog,Multiple TE,5,493 +3392,Chr01,MD01G1018600,multiple homolog,Multiple TE,7,520 +3393,Chr01,MD01G1018700,multiple homolog,Multiple TE,5,493 3394,Chr01,MD01G1018800,multiple homolog,Multiple TE,5,499 3395,Chr01,MD01G1018900,multiple homolog,Multiple TE,4,481 -3396,Chr01,MD01G1019000,unique homolog,Multiple TE,5,487 +3396,Chr01,MD01G1019000,multiple homolog,Multiple TE,5,487 3397,Chr01,MD01G1019100,multiple homolog,Multiple TE,2,477 -3398,Chr01,MD01G1019200,unique homolog,Multiple TE,5,521 +3398,Chr01,MD01G1019200,multiple homolog,Multiple TE,5,521 3399,Chr01,MD01G1019300,multiple homolog,Multiple TE,7,506 3400,Chr01,MD01G1019400,multiple homolog,Multiple TE,5,493 -3401,Chr01,MD01G1019500,unique homolog,Multiple TE,5,500 +3401,Chr01,MD01G1019500,multiple homolog,Multiple TE,5,500 3402,Chr01,MD01G1019600,multiple homolog,Multiple TE,2,496 -3403,Chr01,MD01G1019700,unique homolog,Multiple TE,5,498 -3404,Chr01,MD01G1019800,unique homolog,Multiple TE,2,495 +3403,Chr01,MD01G1019700,multiple homolog,Multiple TE,5,498 +3404,Chr01,MD01G1019800,multiple homolog,Multiple TE,2,495 3405,Chr01,MD01G1019900,multiple homolog,Multiple TE,5,506 3406,Chr01,MD01G1020000,multiple homolog,Multiple TE,6,502 -3407,Chr01,MD01G1020100,unique homolog,Multiple TE,7,494 +3407,Chr01,MD01G1020100,multiple homolog,Multiple TE,7,494 3408,Chr01,MD01G1020200,multiple homolog,Multiple TE,3,509 3409,Chr01,MD01G1020300,multiple homolog,Multiple TE,7,514 -3410,Chr01,MD01G1020400,unique homolog,Multiple TE,6,490 +3410,Chr01,MD01G1020400,multiple homolog,Multiple TE,6,490 3411,Chr01,MD01G1020500,multiple homolog,Multiple TE,2,510 3412,Chr01,MD01G1020600,multiple homolog,Multiple TE,6,481 -3413,Chr01,MD01G1020700,unique homolog,Multiple TE,6,490 +3413,Chr01,MD01G1020700,multiple homolog,Multiple TE,6,490 3414,Chr01,MD01G1020800,multiple homolog,Multiple TE,3,508 -3415,Chr01,MD01G1020900,unique homolog,Multiple TE,4,478 -3416,Chr01,MD01G1021000,unique homolog,Multiple TE,6,498 +3415,Chr01,MD01G1020900,multiple homolog,Multiple TE,4,478 +3416,Chr01,MD01G1021000,multiple homolog,Multiple TE,6,498 3417,Chr01,MD01G1021100,multiple homolog,Multiple TE,5,469 3418,Chr01,MD01G1021200,multiple homolog,Multiple TE,2,511 -3419,Chr01,MD01G1021300,unique homolog,Multiple TE,6,509 +3419,Chr01,MD01G1021300,multiple homolog,Multiple TE,6,509 3420,Chr01,MD01G1021400,multiple homolog,Multiple TE,3,486 3421,Chr01,MD01G1021500,multiple homolog,Multiple TE,5,491 -3422,Chr01,MD01G1021600,unique homolog,Multiple TE,5,509 +3422,Chr01,MD01G1021600,multiple homolog,Multiple TE,5,509 3423,Chr01,MD01G1021700,multiple homolog,Multiple TE,4,487 3424,Chr01,MD01G1021800,multiple homolog,,5,492 -3425,Chr01,MD01G1021900,unique homolog,Multiple TE,3,481 +3425,Chr01,MD01G1021900,multiple homolog,Multiple TE,3,481 3426,Chr01,MD01G1022000,multiple homolog,Multiple TE,6,492 -3427,Chr01,MD01G1022100,unique homolog,Multiple TE,6,505 -3428,Chr01,MD01G1022200,unique homolog,Multiple TE,5,501 +3427,Chr01,MD01G1022100,multiple homolog,Multiple TE,6,505 +3428,Chr01,MD01G1022200,multiple homolog,Multiple TE,5,501 3429,Chr01,MD01G1022300,multiple homolog,Multiple TE,6,507 3430,Chr01,MD01G1022400,multiple homolog,Multiple TE,7,508 -3431,Chr01,MD01G1022500,unique homolog,Multiple TE,6,492 +3431,Chr01,MD01G1022500,multiple homolog,Multiple TE,6,492 3432,Chr01,MD01G1022600,multiple homolog,Multiple TE,7,496 3433,Chr01,MD01G1022700,multiple homolog,Multiple TE,4,508 -3434,Chr01,MD01G1022800,unique homolog,Multiple TE,3,515 +3434,Chr01,MD01G1022800,multiple homolog,Multiple TE,3,515 3435,Chr01,MD01G1022900,multiple homolog,Multiple TE,7,489 3436,Chr01,MD01G1023000,multiple homolog,Multiple TE,5,517 -3437,Chr01,MD01G1023100,unique homolog,Multiple TE,6,479 +3437,Chr01,MD01G1023100,multiple homolog,Multiple TE,6,479 3438,Chr01,MD01G1023200,multiple homolog,Multiple TE,3,495 -3439,Chr01,MD01G1023300,unique homolog,Multiple TE,6,479 -3440,Chr01,MD01G1023400,unique homolog,Multiple TE,4,511 +3439,Chr01,MD01G1023300,multiple homolog,Multiple TE,6,479 +3440,Chr01,MD01G1023400,multiple homolog,Multiple TE,4,511 3441,Chr01,MD01G1023500,multiple homolog,Multiple TE,5,498 3442,Chr01,MD01G1023600,multiple homolog,Multiple TE,7,507 -3443,Chr01,MD01G1023700,unique homolog,Multiple TE,2,505 +3443,Chr01,MD01G1023700,multiple homolog,Multiple TE,2,505 3444,Chr01,MD01G1023800,multiple homolog,Multiple TE,5,504 3445,Chr01,MD01G1023900,multiple homolog,Multiple TE,4,509 -3446,Chr01,MD01G1024000,unique homolog,Multiple TE,4,510 +3446,Chr01,MD01G1024000,multiple homolog,Multiple TE,4,510 3447,Chr01,MD01G1024100,multiple homolog,Multiple TE,6,513 3448,Chr01,MD01G1024200,multiple homolog,Multiple TE,5,512 -3449,Chr01,MD01G1024300,unique homolog,Multiple TE,6,502 +3449,Chr01,MD01G1024300,multiple homolog,Multiple TE,6,502 3450,Chr01,MD01G1024400,multiple homolog,Multiple TE,3,502 -3451,Chr01,MD01G1024500,unique homolog,Multiple TE,4,503 -3452,Chr01,MD01G1024600,unique homolog,Multiple TE,5,500 +3451,Chr01,MD01G1024500,multiple homolog,Multiple TE,4,503 +3452,Chr01,MD01G1024600,multiple homolog,Multiple TE,5,500 3453,Chr01,MD01G1024700,multiple homolog,Multiple TE,2,496 3454,Chr01,MD01G1024800,multiple homolog,Multiple TE,3,503 -3455,Chr01,MD01G1024900,unique homolog,Multiple TE,3,488 +3455,Chr01,MD01G1024900,multiple homolog,Multiple TE,3,488 3456,Chr01,MD01G1025000,multiple homolog,Multiple TE,4,523 3457,Chr01,MD01G1025100,multiple homolog,Multiple TE,2,500 -3458,Chr01,MD01G1025200,unique homolog,Multiple TE,3,504 +3458,Chr01,MD01G1025200,multiple homolog,Multiple TE,3,504 3459,Chr01,MD01G1025300,multiple homolog,Multiple TE,5,475 3460,Chr01,MD01G1025400,multiple homolog,Multiple TE,4,486 -3461,Chr01,MD01G1025500,unique homolog,Multiple TE,4,501 +3461,Chr01,MD01G1025500,multiple homolog,Multiple TE,4,501 3462,Chr01,MD01G1025600,multiple homolog,Multiple TE,2,505 -3463,Chr01,MD01G1025700,unique homolog,Multiple TE,6,496 -3464,Chr01,MD01G1025800,unique homolog,Multiple TE,6,493 +3463,Chr01,MD01G1025700,multiple homolog,Multiple TE,6,496 +3464,Chr01,MD01G1025800,multiple homolog,Multiple TE,6,493 3465,Chr01,MD01G1025900,multiple homolog,Multiple TE,6,490 3466,Chr01,MD01G1026000,multiple homolog,Multiple TE,3,490 -3467,Chr01,MD01G1026100,unique homolog,Multiple TE,5,509 +3467,Chr01,MD01G1026100,multiple homolog,Multiple TE,5,509 3468,Chr01,MD01G1026200,multiple homolog,Multiple TE,4,504 3469,Chr01,MD01G1026300,multiple homolog,Multiple TE,5,496 -3470,Chr01,MD01G1026400,unique homolog,Multiple TE,5,507 +3470,Chr01,MD01G1026400,multiple homolog,Multiple TE,5,507 3471,Chr01,MD01G1026500,multiple homolog,Multiple TE,2,497 3472,Chr01,MD01G1026600,multiple homolog,Multiple TE,2,501 -3473,Chr01,MD01G1026700,unique homolog,Multiple TE,3,507 +3473,Chr01,MD01G1026700,multiple homolog,Multiple TE,3,507 3474,Chr01,MD01G1026800,multiple homolog,Multiple TE,6,489 -3475,Chr01,MD01G1026900,unique homolog,Multiple TE,5,517 -3476,Chr01,MD01G1027000,unique homolog,Multiple TE,5,506 +3475,Chr01,MD01G1026900,multiple homolog,Multiple TE,5,517 +3476,Chr01,MD01G1027000,multiple homolog,Multiple TE,5,506 3477,Chr01,MD01G1027100,multiple homolog,Multiple TE,3,495 3478,Chr01,MD01G1027200,multiple homolog,Multiple TE,3,497 -3479,Chr01,MD01G1027300,unique homolog,Multiple TE,4,496 +3479,Chr01,MD01G1027300,multiple homolog,Multiple TE,4,496 3480,Chr01,MD01G1027400,multiple homolog,Multiple TE,5,502 3481,Chr01,MD01G1027500,multiple homolog,Multiple TE,4,526 -3482,Chr01,MD01G1027600,unique homolog,Multiple TE,5,495 +3482,Chr01,MD01G1027600,multiple homolog,Multiple TE,5,495 3483,Chr01,MD01G1027700,multiple homolog,Multiple TE,3,491 3484,Chr01,MD01G1027800,multiple homolog,Multiple TE,4,506 -3485,Chr01,MD01G1027900,unique homolog,Multiple TE,5,506 +3485,Chr01,MD01G1027900,multiple homolog,Multiple TE,5,506 3486,Chr01,MD01G1028000,multiple homolog,Multiple TE,6,505 -3487,Chr01,MD01G1028100,unique homolog,Multiple TE,7,503 -3488,Chr01,MD01G1028200,unique homolog,Multiple TE,6,491 +3487,Chr01,MD01G1028100,multiple homolog,Multiple TE,7,503 +3488,Chr01,MD01G1028200,multiple homolog,Multiple TE,6,491 3489,Chr01,MD01G1028300,multiple homolog,Multiple TE,5,521 3490,Chr01,MD01G1028400,multiple homolog,,5,503 -3491,Chr01,MD01G1028500,unique homolog,Multiple TE,4,487 +3491,Chr01,MD01G1028500,multiple homolog,Multiple TE,4,487 3492,Chr01,MD01G1028600,multiple homolog,Multiple TE,5,511 3493,Chr01,MD01G1028700,multiple homolog,Multiple TE,2,520 -3494,Chr01,MD01G1028800,unique homolog,Multiple TE,7,516 +3494,Chr01,MD01G1028800,multiple homolog,Multiple TE,7,516 3495,Chr01,MD01G1028900,multiple homolog,Multiple TE,3,508 3496,Chr01,MD01G1029000,multiple homolog,Multiple TE,2,482 -3497,Chr01,MD01G1029100,unique homolog,Multiple TE,2,493 +3497,Chr01,MD01G1029100,multiple homolog,Multiple TE,2,493 3498,Chr01,MD01G1029200,multiple homolog,Multiple TE,3,502 -3499,Chr01,MD01G1029300,unique homolog,Multiple TE,4,506 -3500,Chr01,MD01G1029400,unique homolog,Multiple TE,5,497 +3499,Chr01,MD01G1029300,multiple homolog,Multiple TE,4,506 +3500,Chr01,MD01G1029400,multiple homolog,Multiple TE,5,497 3501,Chr01,MD01G1029500,multiple homolog,Multiple TE,6,495 3502,Chr01,MD01G1029600,multiple homolog,Multiple TE,4,486 -3503,Chr01,MD01G1029700,unique homolog,Multiple TE,4,484 +3503,Chr01,MD01G1029700,multiple homolog,Multiple TE,4,484 3504,Chr01,MD01G1029800,multiple homolog,Multiple TE,4,480 3505,Chr01,MD01G1029900,multiple homolog,Multiple TE,7,484 -3506,Chr01,MD01G1030000,unique homolog,Multiple TE,5,483 +3506,Chr01,MD01G1030000,multiple homolog,Multiple TE,5,483 3507,Chr01,MD01G1030100,multiple homolog,Multiple TE,5,506 3508,Chr01,MD01G1030200,multiple homolog,Multiple TE,6,504 -3509,Chr01,MD01G1030300,unique homolog,Multiple TE,7,505 +3509,Chr01,MD01G1030300,multiple homolog,Multiple TE,7,505 3510,Chr01,MD01G1030400,multiple homolog,Multiple TE,5,505 -3511,Chr01,MD01G1030500,unique homolog,Multiple TE,6,482 -3512,Chr01,MD01G1030600,unique homolog,Multiple TE,4,503 +3511,Chr01,MD01G1030500,multiple homolog,Multiple TE,6,482 +3512,Chr01,MD01G1030600,multiple homolog,Multiple TE,4,503 3513,Chr01,MD01G1030700,multiple homolog,Multiple TE,6,490 3514,Chr01,MD01G1030800,multiple homolog,Multiple TE,6,484 -3515,Chr01,MD01G1030900,unique homolog,Multiple TE,6,502 +3515,Chr01,MD01G1030900,multiple homolog,Multiple TE,6,502 3516,Chr01,MD01G1031000,multiple homolog,Multiple TE,7,480 3517,Chr01,MD01G1031100,multiple homolog,Multiple TE,5,479 -3518,Chr01,MD01G1031200,unique homolog,Multiple TE,3,492 +3518,Chr01,MD01G1031200,multiple homolog,Multiple TE,3,492 3519,Chr01,MD01G1031300,multiple homolog,Multiple TE,3,494 3520,Chr01,MD01G1031400,multiple homolog,Multiple TE,5,512 -3521,Chr01,MD01G1031500,unique homolog,Multiple TE,3,492 +3521,Chr01,MD01G1031500,multiple homolog,Multiple TE,3,492 3522,Chr01,MD01G1031600,multiple homolog,Multiple TE,6,496 -3523,Chr01,MD01G1031700,unique homolog,Multiple TE,3,499 -3524,Chr01,MD01G1031800,unique homolog,Multiple TE,3,493 +3523,Chr01,MD01G1031700,multiple homolog,Multiple TE,3,499 +3524,Chr01,MD01G1031800,multiple homolog,Multiple TE,3,493 3525,Chr01,MD01G1031900,multiple homolog,Multiple TE,7,499 3526,Chr01,MD01G1032000,multiple homolog,Multiple TE,2,507 -3527,Chr01,MD01G1032100,unique homolog,Multiple TE,6,493 +3527,Chr01,MD01G1032100,multiple homolog,Multiple TE,6,493 3528,Chr01,MD01G1032200,multiple homolog,Multiple TE,2,509 3529,Chr01,MD01G1032300,multiple homolog,Multiple TE,6,505 -3530,Chr01,MD01G1032400,unique homolog,Multiple TE,4,496 +3530,Chr01,MD01G1032400,multiple homolog,Multiple TE,4,496 3531,Chr01,MD01G1032500,multiple homolog,Multiple TE,5,487 3532,Chr01,MD01G1032600,multiple homolog,Multiple TE,6,513 3533,Chr01,MD01G1032700,unique homolog,Multiple TE,5,502 diff --git a/results/analyses_test/fisher_exact.csv b/results/analyses_test/fisher_exact.csv index 9260eb58e6a26af93a1f37ffc3d07f81d76d34fc..e7ba24ddfc1cdfc6d8e8fddef61d9335b61c6429 100644 --- a/results/analyses_test/fisher_exact.csv +++ b/results/analyses_test/fisher_exact.csv @@ -1,2 +1,4 @@ -,Variables,duo_analysis,Odds ratio,p-value,interpretation -0,type dupli,Chr01 and Chr02,None,<10-6,Significant +,Variables,duo_factor_analysis,duo_variable,Odds ratio,p-value,duo_interpretation,variable_interpretation +0,type dupli,Chr01 and Chr02,multiple homolog and singleton,0.0,1.1e-05,Significant,Significant +1,type dupli,Chr01 and Chr02,multiple homolog and unique homolog,0.318754,<10-6,Significant,Significant +2,type dupli,Chr01 and Chr02,singleton and unique homolog,inf,0.009415,Significant,Significant diff --git a/results/analyses_test/qualitative_hypergeometric.csv b/results/analyses_test/qualitative_hypergeometric.csv index e5ca367431019b4f1850106ecafcdfa12ef41239..1589fd497365aebbe2ecfc48a132463ccad4750f 100644 --- a/results/analyses_test/qualitative_hypergeometric.csv +++ b/results/analyses_test/qualitative_hypergeometric.csv @@ -1,14 +1,14 @@ ,chr,variables,modalities,cla/mod,mod/cla,global,p-value,v-test,interpretation -0,Chr01,type dupli,unique homolog,65.1976669,41.8817652,27.50936,<10-6,20.8447884,over-represented -1,Chr01,type dupli,multiple homolog,34.2040414,57.785179,72.3480121,<10-6,-21.117166,under-represented -2,Chr01,type dupli,singleton,100.0,0.3330558,0.1426279,0.0011236,3.2576032,over-represented +0,Chr01,type dupli,unique homolog,63.2694938,38.5095754,26.0652523,<10-6,18.3324054,over-represented +1,Chr01,type dupli,multiple homolog,35.4448743,61.0324729,73.7386343,<10-6,-18.7110892,under-represented +2,Chr01,type dupli,singleton,100.0,0.4579517,0.1961134,8.77e-05,3.9223954,over-represented 3,Chr01,type TE,Multiple TE,42.4553813,98.0432973,98.8946336,<10-6,-5.3466735,under-represented 4,Chr01,type TE,missing values,40.0,0.4163197,0.4457122,0.7864516,Not significant,Not significant 5,Chr01,type TE,No TE,100.0,0.5828476,0.2495989,6.8e-06,4.4990299,over-represented 6,Chr01,type TE,One TE,100.0,0.9575354,0.4100553,<10-6,5.9219821,over-represented -7,Chr02,type dupli,unique homolog,34.8023331,16.7446211,27.50936,<10-6,-20.8721322,under-represented -8,Chr02,type dupli,multiple homolog,65.7959586,83.2553789,72.3480121,<10-6,21.0905244,over-represented -9,Chr02,type dupli,singleton,0.0,0.0,0.1426279,0.0238804,-2.2590484,under-represented +7,Chr02,type dupli,unique homolog,36.7305062,16.7446211,26.0652523,<10-6,-18.3684546,under-represented +8,Chr02,type dupli,multiple homolog,64.5551257,83.2553789,73.7386343,<10-6,18.6764213,over-represented +9,Chr02,type dupli,singleton,0.0,0.0,0.1961134,0.0043259,-2.8533663,under-represented 10,Chr02,type TE,Multiple TE,57.5446187,99.5322732,98.8946336,<10-6,5.2631827,over-represented 11,Chr02,type TE,missing values,60.0,0.4677268,0.4457122,0.78645,Not significant,Not significant 12,Chr02,type TE,No TE,0.0,0.0,0.2495989,0.0007952,-3.354451,under-represented