The colormap 'viridis' is now used explicitly in the LineCollection for

organ profiles.

interekt.py

@@ -492,7 +492,6 @@ def load_hdf5_file(hdf5file):
 
     # Retrieve the data on the steady state from the h5 file
     steady_state, exclude_steady_state = h5store.get_steady_state(hdf5file)
-    print("Steady state: ", steady_state, exclude_steady_state)
     interekt.steady_state_image = steady_state
     interekt.exclude_steady_state_from_time_series.set(exclude_steady_state)
 
@@ -1450,7 +1449,7 @@ def show_time_series(tige_id=None):
 
     # Subplot with tige profiles
     axProfiles = fig_time.add_subplot(grid[:,0])
-    lcollec = LineCollection(lines, linewidth=(2,), color='gray')
+    lcollec = LineCollection(lines, linewidth=(2,), cmap='viridis')
     lcollec.set_array(times)
     axProfiles.add_collection(lcollec)
     axProfiles.set_xlim((x.min(), x.max()))
@@ -1904,7 +1903,7 @@ def show_growth_rate():
 
     # Subplot with tige profiles
     axProfiles = fig_growth_rate.add_subplot(grid[:, 0])
-    lcollec = LineCollection(lines, linewidth=(2,), color='gray')
+    lcollec = LineCollection(lines, linewidth=(2,), cmap='viridis')
     lcollec.set_array(times)
     axProfiles.add_collection(lcollec)
     xmin, xmax, ymin, ymax = x.min(), x.max(), y.min(), y.max()
@@ -2483,7 +2482,7 @@ def show_beta_tilde():
 
     # Displaying tige profiles
     axProfiles = fig_beta.add_subplot(grid[:,0])
-    lcollec = LineCollection(lines, linewidth=(2,), color='gray')
+    lcollec = LineCollection(lines, linewidth=(2,), cmap='viridis')
     lcollec.set_array(times)
     axProfiles.add_collection(lcollec)
     axProfiles.set_xlim((x.min(), x.max()))
@@ -2775,7 +2774,7 @@ def show_gamma_tilde():
 
     # Displaying tige profiles
     axProfiles = fig_gamma.add_subplot(grid[:,0])
-    lcollec = LineCollection(lines, linewidth=(2,), color='gray')
+    lcollec = LineCollection(lines, linewidth=(2,), cmap='viridis')
     lcollec.set_array(times)
     axProfiles.add_collection(lcollec)
     axProfiles.set_xlim((x.min(), x.max()))