Build feature hierarchy.

636ff4db · Hugo Devillers · 82a7d605 · 636ff4db · 636ff4db · 636ff4db
Commit 636ff4db authored May 18, 2021 by Hugo Devillers
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -3,6 +3,20 @@
 This document summerizes the cumulative changes in genome annoations
 since the initial annotation retieved from the EBI.

+## v1.1 (2021-05-18)
+
+### Edited
+
+* Build feature hierarchy.
+
+### Fixed
+
+* Locus tag issue: YALIA101_S06E08900T.
+* Bad mRNA and gene coordinates: YALIA101_S01E12200G.
+* Bad mRNA and gene coordinates: YALIA101_S01E29712G.
+* Too large frameshift: YALIA101_S01E18778G
+* Bad mRNA and gene coordinates: YALIA101_S04E08284G.
+
 ## v1.0 (2021-05-18)

 ### Added

--- a/LT576309.embl
+++ b/LT576309.embl
-ID   LT576309; SV 1; linear; genomic DNA; CON; FUN; 37116 BP.
+ID   LT576309; SV 1; linear; genomic DNA; STD; FUN; 37116 BP.
 XX
 AC   LT576309;
 XX
-PR   Project:PRJEB14097;
-XX
 DT   19-JUN-2016 (Rel. 129, Created)
 DT   28-OCT-2016 (Rel. 130, Last updated, Version 2)
 XX
@@ -14,13 +12,13 @@ XX
 OS   Yarrowia lipolytica
 OC   Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes;
 OC   Saccharomycetales; Dipodascaceae; Yarrowia.
+OX   NCBI_TaxID=4952
 XX
 RN   [1]
 RA   Devillers H.;
 RT   ;
-RL   Submitted (20-MAY-2016) to the INSDC.
-RL   INRA UMR 1319, Institut Micalis, Bat. CBAI, Thiverval-Grignon, 78850,
-RL   France
+RL   Submitted (20-MAY-2016) to the INSDC. INRA UMR 1319, Institut Micalis,
+RL   Bat. CBAI, Thiverval-Grignon, 78850, France
 XX
 DR   MD5; 8b10759e83f587145b068c4893574fb9.
 DR   ENA; FLLM01000000; SET.
@@ -31,69 +29,75 @@ XX
 FH   Key             Location/Qualifiers
 FH
 FT   source          1..37116
-FT                   /organism="Yarrowia lipolytica"
-FT                   /mol_type="genomic DNA"
 FT                   /db_xref="taxon:4952"
+FT                   /mol_type="genomic DNA"
+FT                   /organism="Yarrowia lipolytica"
 FT   assembly_gap    659..758
-FT                   /estimated_length=unknown
+FT                   /estimated_length="unknown"
 FT                   /gap_type="within scaffold"
 FT                   /linkage_evidence="paired-ends"
 FT   assembly_gap    1415..1514
-FT                   /estimated_length=unknown
+FT                   /estimated_length="unknown"
 FT                   /gap_type="within scaffold"
 FT                   /linkage_evidence="paired-ends"
+FT   gene            5123..5878
+FT                   /locus_tag="YALIA101_S18E00100G"
 FT   mRNA            5123..5878
 FT                   /locus_tag="YALIA101_S18E00100G"
-FT                   /standard_name="YALIA101S18e00100g1"
 FT                   /product="YALIA101S18e00100g1_1"
+FT                   /standard_name="YALIA101S18e00100g1"
 FT   CDS             5123..5878
-FT                   /transl_table=1
 FT                   /locus_tag="YALIA101_S18E00100G"
-FT                   /standard_name="YALIA101S18e00100g1_1"
 FT                   /protein_id="SEI37021.1"
+FT                   /standard_name="YALIA101S18e00100g1_1"
+FT                   /transl_table=1
 FT                   /translation="MSTIEDLKATVERLAARVHELEASAKSKIAPEVPKSIRMVLIGPP
 FT                   GAGKGTQAPNLVEKYCACHLATGDMLRSQVQQQTPLGVEAKKIMDAGGLVSDDIMVNMI
 FT                   RSELENNSKCKNGFILDGFPRTIPQAEKLDEMLAEKKQPLEKAVELKIPDDLLVARITG
 FT                   RLVHPASGRSYHKVFNPPKKEMIDDITGEALVQRSDDNADALKKRLVSFHKQTEPIVGY
 FT                   YQKTGIWKGVDAAQDPKKVWGDILKCLGQ"
 FT   assembly_gap    6103..6202
-FT                   /estimated_length=unknown
+FT                   /estimated_length="unknown"
 FT                   /gap_type="within scaffold"
 FT                   /linkage_evidence="paired-ends"
 FT   assembly_gap    13639..13738
-FT                   /estimated_length=unknown
+FT                   /estimated_length="unknown"
 FT                   /gap_type="within scaffold"
 FT                   /linkage_evidence="paired-ends"
+FT   gene            14119..14622
+FT                   /locus_tag="YALIA101_S18E00122G"
 FT   mRNA            14119..14622
 FT                   /locus_tag="YALIA101_S18E00122G"
-FT                   /standard_name="YALIA101S18e00122g1"
 FT                   /product="YALIA101S18e00122g1_1"
+FT                   /standard_name="YALIA101S18e00122g1"
 FT   CDS             14119..14622
-FT                   /transl_table=1
 FT                   /locus_tag="YALIA101_S18E00122G"
-FT                   /standard_name="YALIA101S18e00122g1_1"
 FT                   /protein_id="SEI37022.1"
+FT                   /standard_name="YALIA101S18e00122g1_1"
+FT                   /transl_table=1
 FT                   /translation="MSSRSTSALSRNLISHAQESKVEISTHMKFLRKMRPRTSSRQRFL
 FT                   LLILDCPEVKKDVEGDEVESKDDAKESQTEDVMGAVMELNDTEENSISVEKKTKEASEK
 FT                   ESRKESKTGDVAVEEVNSESQHVNNDIVPGRADAEPVKVEPRPENANEVIAEGGQGGGE
 FT                   ERQG"
 FT   assembly_gap    17750..17849
-FT                   /estimated_length=unknown
+FT                   /estimated_length="unknown"
 FT                   /gap_type="within scaffold"
 FT                   /linkage_evidence="paired-ends"
 FT   assembly_gap    21815..21914
-FT                   /estimated_length=unknown
+FT                   /estimated_length="unknown"
 FT                   /gap_type="within scaffold"
 FT                   /linkage_evidence="paired-ends"
+FT   gene            complement(23861..24919)
+FT                   /locus_tag="YALIA101_S18E00144G"
 FT   mRNA            complement(23861..24919)
 FT                   /locus_tag="YALIA101_S18E00144G"
-FT                   /standard_name="YALIA101S18e00144g1"
 FT                   /product="YALIA101S18e00144g1_1"
+FT                   /standard_name="YALIA101S18e00144g1"
 FT   CDS             complement(23861..24919)
-FT                   /transl_table=1
 FT                   /locus_tag="YALIA101_S18E00144G"
-FT                   /standard_name="YALIA101S18e00144g1_1"
 FT                   /protein_id="SEI37023.1"
+FT                   /standard_name="YALIA101S18e00144g1_1"
+FT                   /transl_table=1
 FT                   /translation="MLALQDRQPYYSGSAGQPRSDYSYNLVPKDRESVIGAAQVPAQAP
 FT                   VAAHEYQQDNYYYSSRPQSKSLNSSAPSINHSSPQHSQVNTSPSLPSIYDPNGPVAAAY
 FT                   YSGPNSGVNSANHSAVHSQAHSAVHSQVPSQVPSQVPSQVPSQAPSQAGSAPMSPNRLP
@@ -101,27 +105,31 @@ FT                   MPVRNSPPQYQSPTANNPYAVGVGSGQLLNQPFNQPMTQQQLQMQQLQLQQQQIQQIQQ
 FT                   LQQQQIQQIQQLQQQQVQQQQFQAQAAQQNQAQYYGQQVPQQMMQMGYQQQMHPHSHLM
 FT                   NQFSSKRQFRTLKKHVCTVCGKRFTRPSSLQTHTYSHTGEKPFRCEFSGCGRQFSVVSN
 FT                   LRRHQKIHSPRE"
+FT   gene            25695..26159
+FT                   /locus_tag="YALIA101_S18E00166G"
 FT   mRNA            25695..26159
 FT                   /locus_tag="YALIA101_S18E00166G"
-FT                   /standard_name="YALIA101S18e00166g1"
 FT                   /product="YALIA101S18e00166g1_1"
+FT                   /standard_name="YALIA101S18e00166g1"
 FT   CDS             25695..26159
-FT                   /transl_table=1
 FT                   /locus_tag="YALIA101_S18E00166G"
-FT                   /standard_name="YALIA101S18e00166g1_1"
 FT                   /protein_id="SEI37024.1"
+FT                   /standard_name="YALIA101S18e00166g1_1"
+FT                   /transl_table=1
 FT                   /translation="MKISPEPYTADLYKLVRKNMKGMYEGSGMGWNRVDKIDEMEDEEL
 FT                   AYHVARENGEMLGFVSFMHTVEDDVEVVYLYELQVAKGRQGHGVGKELMRVVIDEARAC
 FT                   GRPIMLTVFLMNERAIGFYRRYGFERVGRGPQEGKRVRGWMQMRRDTRSD"
+FT   gene            34384..36099
+FT                   /locus_tag="YALIA101_S18E00188G"
 FT   mRNA            34384..36099
 FT                   /locus_tag="YALIA101_S18E00188G"
-FT                   /standard_name="YALIA101S18e00188g1"
 FT                   /product="YALIA101S18e00188g1_1"
+FT                   /standard_name="YALIA101S18e00188g1"
 FT   CDS             34384..36099
-FT                   /transl_table=1
 FT                   /locus_tag="YALIA101_S18E00188G"
-FT                   /standard_name="YALIA101S18e00188g1_1"
 FT                   /protein_id="SEI37025.1"
+FT                   /standard_name="YALIA101S18e00188g1_1"
+FT                   /transl_table=1
 FT                   /translation="MSIYVANLPGSVSEADLFELFKPHGPLKVIKIPRDPKLRTPLGHA
 FT                   YVTFYNPDHADAALGALKETELGGQQVTCALTEEVPSSASSMSTPPSSAHSPIDPARAV
 FT                   FVRDTRDGVDAATTKTALESLGAVSLQPKGPNAFVAVFPTAEEASKVLSDELANLEISP

--- a/LT576310.embl
+++ b/LT576310.embl
--- a/LT576311.embl
+++ b/LT576311.embl
--- a/LT576312.embl
+++ b/LT576312.embl
-ID   LT576312; SV 1; linear; genomic DNA; CON; FUN; 9766 BP.
+ID   LT576312; SV 1; linear; genomic DNA; STD; FUN; 9766 BP.
 XX
 AC   LT576312;
 XX
-PR   Project:PRJEB14097;
-XX
 DT   19-JUN-2016 (Rel. 129, Created)
 DT   28-OCT-2016 (Rel. 130, Last updated, Version 2)
 XX
@@ -14,13 +12,13 @@ XX
 OS   Yarrowia lipolytica
 OC   Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes;
 OC   Saccharomycetales; Dipodascaceae; Yarrowia.
+OX   NCBI_TaxID=4952
 XX
 RN   [1]
 RA   Devillers H.;
 RT   ;
-RL   Submitted (20-MAY-2016) to the INSDC.
-RL   INRA UMR 1319, Institut Micalis, Bat. CBAI, Thiverval-Grignon, 78850,
-RL   France
+RL   Submitted (20-MAY-2016) to the INSDC. INRA UMR 1319, Institut Micalis,
+RL   Bat. CBAI, Thiverval-Grignon, 78850, France
 XX
 DR   MD5; ed3aaf18dfc2db6b79de0c57c95881c3.
 DR   ENA; FLLM01000000; SET.
@@ -30,31 +28,35 @@ XX
 FH   Key             Location/Qualifiers
 FH
 FT   source          1..9766
-FT                   /organism="Yarrowia lipolytica"
-FT                   /mol_type="genomic DNA"
 FT                   /db_xref="taxon:4952"
+FT                   /mol_type="genomic DNA"
+FT                   /organism="Yarrowia lipolytica"
+FT   gene            241..795
+FT                   /locus_tag="YALIA101_S22E00100G"
 FT   mRNA            241..795
 FT                   /locus_tag="YALIA101_S22E00100G"
-FT                   /standard_name="YALIA101S22e00100g1"
 FT                   /product="YALIA101S22e00100g1_1"
+FT                   /standard_name="YALIA101S22e00100g1"
 FT   CDS             241..795
-FT                   /transl_table=1
 FT                   /locus_tag="YALIA101_S22E00100G"
-FT                   /standard_name="YALIA101S22e00100g1_1"
 FT                   /protein_id="SEI37036.1"
+FT                   /standard_name="YALIA101S22e00100g1_1"
+FT                   /transl_table=1
 FT                   /translation="MTRYSVQSVDPTKTASARGAYLRTSFKNTYEVAGAIRGWNLQKAL
 FT                   AYLDQVTDHKRAIPFRKHAGSIGRTGQGKEFGVTKARWPVKSIKFVQDLLQNAQANAET
 FT                   KGLDKETLVISHIQVNQAPKQRRRTYRAHGRINAYQSSPSHIELILSEPAEEIAKAKET
 FT                   SLAHISSRQRGRIAAQKRISA"
+FT   gene            complement(6523..7656)
+FT                   /locus_tag="YALIA101_S22E00122G"
 FT   mRNA            complement(6523..7656)
 FT                   /locus_tag="YALIA101_S22E00122G"
-FT                   /standard_name="YALIA101S22e00122g1"
 FT                   /product="YALIA101S22e00122g1_1"
+FT                   /standard_name="YALIA101S22e00122g1"
 FT   CDS             complement(6523..7656)
-FT                   /transl_table=1
 FT                   /locus_tag="YALIA101_S22E00122G"
-FT                   /standard_name="YALIA101S22e00122g1_1"
 FT                   /protein_id="SEI37037.1"
+FT                   /standard_name="YALIA101S22e00122g1_1"
+FT                   /transl_table=1
 FT                   /translation="MSLPDIDSIPPGSTVPLDQLSSMFATLSTNNGLDLGQLSGLLAQE
 FT                   STQGGSSPTSVVVAASPTSEAPAANTPEASPSNNNNNGGLGPSQSLVDNGPGFQSSLQA
 FT                   LLGTSVTLEVPTAGSNTGNASPSASNGGSDGGDSGSSPSATITGSPTGGSGGSNTGPGF
@@ -62,11 +64,13 @@ FT                   TLPTFPAVTLSDSPSAPSNTGGFQLGNIFDGLFGTNSIAIPQSWSELFVKTVDWNTLYH
 FT                   GSPGTIDSSGNIIPMPTATGSDLPAPVVTGSVITLVASPIPTSSGASSSSGGGILGWIG
 FT                   GLFGGDSSSTQAPVATAPVVTNTGVTVVTGTAVVTVTSCSESPCPGSPTTAAPSPSTIL
 FT                   PPNNGGVPTTTGPSQANGAGNLQVVVPLLAVPLLALL"
+FT   gene            9670..9761
+FT                   /locus_tag="YALIA101_S22E00144R"
 FT   tRNA            join(9670..9707,9726..9761)
 FT                   /locus_tag="YALIA101_S22E00144R"
-FT                   /standard_name="YALIA101S22e00144r1"
 FT                   /note="transfer RNA Asn (anticodon: GTT); Annotated by
 FT                   tRNAscan-SE (cove score: 67.19)"
+FT                   /standard_name="YALIA101S22e00144r1"
 XX
 SQ   Sequence 9766 BP; 2527 A; 2242 C; 2426 G; 2571 T; 0 other;
     ttatttccat ttttaatgcc attttaattc cactttttac ttctatttta tttatttatt        60

--- a/LT576313.embl
+++ b/LT576313.embl
-ID   LT576313; SV 1; linear; genomic DNA; CON; FUN; 7367 BP.
+ID   LT576313; SV 1; linear; genomic DNA; STD; FUN; 7367 BP.
 XX
 AC   LT576313;
 XX
-PR   Project:PRJEB14097;
-XX
 DT   19-JUN-2016 (Rel. 129, Created)
 DT   28-OCT-2016 (Rel. 130, Last updated, Version 2)
 XX
@@ -14,13 +12,13 @@ XX
 OS   Yarrowia lipolytica
 OC   Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes;
 OC   Saccharomycetales; Dipodascaceae; Yarrowia.
+OX   NCBI_TaxID=4952
 XX
 RN   [1]
 RA   Devillers H.;
 RT   ;
-RL   Submitted (20-MAY-2016) to the INSDC.
-RL   INRA UMR 1319, Institut Micalis, Bat. CBAI, Thiverval-Grignon, 78850,
-RL   France
+RL   Submitted (20-MAY-2016) to the INSDC. INRA UMR 1319, Institut Micalis,
+RL   Bat. CBAI, Thiverval-Grignon, 78850, France
 XX
 DR   MD5; 5cb61fa3fcee7639e145411f8de41846.
 DR   ENA; FLLM01000000; SET.
@@ -30,18 +28,20 @@ XX
 FH   Key             Location/Qualifiers
 FH
 FT   source          1..7367
-FT                   /organism="Yarrowia lipolytica"
-FT                   /mol_type="genomic DNA"
 FT                   /db_xref="taxon:4952"
+FT                   /mol_type="genomic DNA"
+FT                   /organism="Yarrowia lipolytica"
+FT   gene            1080..2165
+FT                   /locus_tag="YALIA101_S26E00100G"
 FT   mRNA            1080..2165
 FT                   /locus_tag="YALIA101_S26E00100G"
-FT                   /standard_name="YALIA101S26e00100g1"
 FT                   /product="YALIA101S26e00100g1_1"
+FT                   /standard_name="YALIA101S26e00100g1"
 FT   CDS             1080..2165
-FT                   /transl_table=1
 FT                   /locus_tag="YALIA101_S26E00100G"
-FT                   /standard_name="YALIA101S26e00100g1_1"
 FT                   /protein_id="SEI37040.1"
+FT                   /standard_name="YALIA101S26e00100g1_1"
+FT                   /transl_table=1
 FT                   /translation="MNRIKAPGGAPNIHTHFVLLRSRAFSSTQKCMDYPAHDNPSPYEI
 FT                   FGMGPHNLNQKALKREYYILAKKYHPDSNGSSEETADLTKEIKDARFRKISNAYEILKN
 FT                   PSRRHAYDRFGQGWEGARPGPYGQDGATSNLYNQASTATAGHGPRYSTQSDGFWGASGW
@@ -49,15 +49,17 @@ FT                   QDYEDLRNHSSKAKQNENTTLIGMALVVVAVVVTYLQIKRIIDVMEDQYFRVKEQNKKL
 FT                   EDSLFWARNNYGFAQGKDDRVSRFLVMRRNSLAEEGDYMEAQLSEDNWRRRKIAEKRAK
 FT                   QAEAAAAAASNGEEVHGKLDATPEPPVRPPPTALEVVNAFSKSELISKAVSLTTKDQVV
 FT                   STTSAVFTDSLLTSIQGVDKE"
+FT   gene            4104..6734
+FT                   /locus_tag="YALIA101_S26E00122G"
 FT   mRNA            4104..6734
 FT                   /locus_tag="YALIA101_S26E00122G"
-FT                   /standard_name="YALIA101S26e00122g1"
 FT                   /product="YALIA101S26e00122g1_1"
+FT                   /standard_name="YALIA101S26e00122g1"
 FT   CDS             4104..6734
-FT                   /transl_table=1
 FT                   /locus_tag="YALIA101_S26E00122G"
-FT                   /standard_name="YALIA101S26e00122g1_1"
 FT                   /protein_id="SEI37041.1"
+FT                   /standard_name="YALIA101S26e00122g1_1"
+FT                   /transl_table=1
 FT                   /translation="MTDIKPVDLDTKEYDIDTADVREITLHTEEWIAQKLLIPPSDVDG
 FT                   TYPRSVTVISQAFENMSEAEAIAIVKKAWDQHSSDANLTAEHKDVLQHLIEMIGEGKEG
 FT                   EDESVPPEDLEELKYQACLFHHWSPYQQVRSVTTPFDDQDEECETFRCYVIGIIWVGIA

--- a/LT576314.embl
+++ b/LT576314.embl
-ID   LT576314; SV 1; linear; genomic DNA; CON; FUN; 10228 BP.
+ID   LT576314; SV 1; linear; genomic DNA; STD; FUN; 10228 BP.
 XX
 AC   LT576314;
 XX
-PR   Project:PRJEB14097;
-XX
 DT   19-JUN-2016 (Rel. 129, Created)
 DT   28-OCT-2016 (Rel. 130, Last updated, Version 2)
 XX
@@ -14,13 +12,13 @@ XX
 OS   Yarrowia lipolytica
 OC   Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes;
 OC   Saccharomycetales; Dipodascaceae; Yarrowia.
+OX   NCBI_TaxID=4952
 XX
 RN   [1]
 RA   Devillers H.;
 RT   ;
-RL   Submitted (20-MAY-2016) to the INSDC.
-RL   INRA UMR 1319, Institut Micalis, Bat. CBAI, Thiverval-Grignon, 78850,
-RL   France
+RL   Submitted (20-MAY-2016) to the INSDC. INRA UMR 1319, Institut Micalis,
+RL   Bat. CBAI, Thiverval-Grignon, 78850, France
 XX
 DR   MD5; 861cfc091456eb0559cd3bcea5ae93d8.
 DR   ENA; FLLM01000000; SET.
@@ -30,18 +28,20 @@ XX
 FH   Key             Location/Qualifiers
 FH
 FT   source          1..10228
-FT                   /organism="Yarrowia lipolytica"
-FT                   /mol_type="genomic DNA"
 FT                   /db_xref="taxon:4952"
+FT                   /mol_type="genomic DNA"
+FT                   /organism="Yarrowia lipolytica"
+FT   gene            complement(960..2720)
+FT                   /locus_tag="YALIA101_S21E00100G"
 FT   mRNA            complement(960..2720)
 FT                   /locus_tag="YALIA101_S21E00100G"
-FT                   /standard_name="YALIA101S21e00100g1"
 FT                   /product="YALIA101S21e00100g1_1"
+FT                   /standard_name="YALIA101S21e00100g1"
 FT   CDS             complement(960..2720)
-FT                   /transl_table=1
 FT                   /locus_tag="YALIA101_S21E00100G"
-FT                   /standard_name="YALIA101S21e00100g1_1"
 FT                   /protein_id="SEI37033.1"
+FT                   /standard_name="YALIA101S21e00100g1_1"
+FT                   /transl_table=1
 FT                   /translation="METEKTFTTTTVDSDPDTHGEVVVNTKKMNAWQRFKDGFGPADVS
 FT                   HIDTEGLTPMEIAALKTANAPLNRGLKGRHLQMIAIGGSIGTGLFVGSGASLATGGPAA
 FT                   LLIAYGIIGCMLLCTVHALGELAVAFPVSGAFSTYFTRFIDPAWGFAMGWNYTLLWFAI
@@ -53,15 +53,17 @@ FT                   YIDKNGRPIYGIFAVLAFGLFAFIAAASADIRNKVFMWLLALSGLSSILVWGSINLAHI
 FT                   RFRQALKFRGRDTSELTFVAGFGVWGSVFGLTLNCLVLVAQFWIALYPIGGEPNAEAFF
 FT                   AAYLAAPIVIVFWIFWKVWKRPPFLKVSDLDIDTGRRDTDLDRVRAETTAEREYIASRN
 FT                   FFYRVYKFWC"
+FT   gene            complement(5864..7453)
+FT                   /locus_tag="YALIA101_S21E00122G"
 FT   mRNA            complement(5864..7453)
 FT                   /locus_tag="YALIA101_S21E00122G"
-FT                   /standard_name="YALIA101S21e00122g1"
 FT                   /product="YALIA101S21e00122g1_1"
+FT                   /standard_name="YALIA101S21e00122g1"
 FT   CDS             complement(5864..7453)
-FT                   /transl_table=1
 FT                   /locus_tag="YALIA101_S21E00122G"
-FT                   /standard_name="YALIA101S21e00122g1_1"
 FT                   /protein_id="SEI37034.1"
+FT                   /standard_name="YALIA101S21e00122g1_1"
+FT                   /transl_table=1
 FT                   /translation="MPITVSQEVTETAPEVSWAATKTYLGSRVSTLKPPKLSAQEKRCL
 FT                   NPIYVLRQLGKKQWLFFSVAILGWIWDAFDYFSVSQTATEIAKDLDMSVADITWGLSIV
 FT                   LMLRSIGAIIFGLASDRFGRKWPFIVNIAIFSILELGTGFVQTYTQFLALRALFGIAMG
@@ -72,15 +74,17 @@ FT                   GALSGQVTIGHLSNVFGRRLSVIISCVIGGALIYPWAFSGGGAGINASVFFLQFFVGCW
 FT                   GIVPIHLSELTPPALRTSLVGVAYQLGNLASAASSTIEAKIGERFPILDEHGNHLPEEY
 FT                   DYGKVMAIFMGCVFAFTMIVMFLGPEKRGSDLCAPQYEVTDAQTAAGDEKFEDKEKVEE
 FT                   VAIERIDTNLTR"
+FT   gene            complement(8654..9682)
+FT                   /locus_tag="YALIA101_S21E00144G"
 FT   mRNA            complement(8654..9682)
 FT                   /locus_tag="YALIA101_S21E00144G"
-FT                   /standard_name="YALIA101S21e00144g1"
 FT                   /product="YALIA101S21e00144g1_1"
+FT                   /standard_name="YALIA101S21e00144g1"
 FT   CDS             complement(8654..9682)
-FT                   /transl_table=1
 FT                   /locus_tag="YALIA101_S21E00144G"
-FT                   /standard_name="YALIA101S21e00144g1_1"
 FT                   /protein_id="SEI37035.1"
+FT                   /standard_name="YALIA101S21e00144g1_1"
+FT                   /transl_table=1
 FT                   /translation="MSYTISAAALYSATIYLLFLRDRSRQSLERSEILAAREATNYSIS
 FT                   NTTIFSGVTAKSYGFNAHYRGVPATYWSWLLLVQGLFVLGLFYMDWPTVGYGALLVWSF
 FT                   YAYATEQCDKQGRMSGLKIQSMFGPVKTFAGRDKFHWYAVVNTGTSLDLLPESSDDELS

--- a/LT576315.embl
+++ b/LT576315.embl
--- a/LT576316.embl
+++ b/LT576316.embl
-ID   LT576316; SV 1; linear; genomic DNA; CON; FUN; 11202 BP.
+ID   LT576316; SV 1; linear; genomic DNA; STD; FUN; 11202 BP.
 XX
 AC   LT576316;
 XX
-PR   Project:PRJEB14097;
-XX
 DT   19-JUN-2016 (Rel. 129, Created)
 DT   28-OCT-2016 (Rel. 130, Last updated, Version 2)
 XX
@@ -14,13 +12,13 @@ XX
 OS   Yarrowia lipolytica
 OC   Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes;
 OC   Saccharomycetales; Dipodascaceae; Yarrowia.
+OX   NCBI_TaxID=4952
 XX
 RN   [1]
 RA   Devillers H.;
 RT   ;
-RL   Submitted (20-MAY-2016) to the INSDC.
-RL   INRA UMR 1319, Institut Micalis, Bat. CBAI, Thiverval-Grignon, 78850,
-RL   France
+RL   Submitted (20-MAY-2016) to the INSDC. INRA UMR 1319, Institut Micalis,
+RL   Bat. CBAI, Thiverval-Grignon, 78850, France
 XX
 DR   MD5; 300fc5b224dd279fe94b56204d439663.
 DR   ENA; FLLM01000000; SET.
@@ -30,18 +28,20 @@ XX
 FH   Key             Location/Qualifiers
 FH
 FT   source          1..11202
-FT                   /organism="Yarrowia lipolytica"
-FT                   /mol_type="genomic DNA"
 FT                   /db_xref="taxon:4952"
+FT                   /mol_type="genomic DNA"
+FT                   /organism="Yarrowia lipolytica"
+FT   gene            354..2123
+FT                   /locus_tag="YALIA101_S20E00100G"
 FT   mRNA            354..2123
 FT                   /locus_tag="YALIA101_S20E00100G"
-FT                   /standard_name="YALIA101S20e00100g1"
 FT                   /product="YALIA101S20e00100g1_1"
+FT                   /standard_name="YALIA101S20e00100g1"
 FT   CDS             354..2123
-FT                   /transl_table=1
 FT                   /locus_tag="YALIA101_S20E00100G"
-FT                   /standard_name="YALIA101S20e00100g1_1"
 FT                   /protein_id="SEI37030.1"
+FT                   /standard_name="YALIA101S20e00100g1_1"
+FT                   /transl_table=1
 FT                   /translation="MTLTNKLLHLVLCLLLAATICGASPVDLAARDFSDHQNELPSPSA
 FT                   SDKYFNWTVDWTIQNPDGVFPRRVISINGEWPLPVINVTKGDRVVIDLYNDLGTQNVSL
 FT                   HFHGLYQKGQNANDGPVWITQCPQTYHNQHTFMRYNFTVDQSGAYWYHSHVDGQYPDGL
@@ -53,15 +53,17 @@ FT                   TYTHPKVPVLYTVLSSPNGLETNREIYGSNSNVFLLKHNEVVDVVINNQDDGEHPFHLH
 FT                   GRNFQVPYRSPEYDDDNMTAFDPALKKDFSPIPMRRDTVYVRPNGNFVLRYRANNPGVW
 FT                   FFHCHIEWHMSQGLALVMVEAPTEIKQKQTVPENHLQICQAGNVPTAGNAAANSRNWLD
 FT                   LSNQNLQAPGLPH"
+FT   gene            3707..5080
+FT                   /locus_tag="YALIA101_S20E00122G"
 FT   mRNA            3707..5080
 FT                   /locus_tag="YALIA101_S20E00122G"
-FT                   /standard_name="YALIA101S20e00122g1"
 FT                   /product="YALIA101S20e00122g1_1"
+FT                   /standard_name="YALIA101S20e00122g1"
 FT   CDS             3707..5080
-FT                   /transl_table=1
 FT                   /locus_tag="YALIA101_S20E00122G"
-FT                   /standard_name="YALIA101S20e00122g1_1"
 FT                   /protein_id="SEI37031.1"
+FT                   /standard_name="YALIA101S20e00122g1_1"
+FT                   /transl_table=1
 FT                   /translation="MRKGLSSQHVDSHPNRTELELLFVPPERDSDDGFEIKYPYPDESP
 FT                   YLETYDYPRPYAGTYPEFYAYPNDLSGENYPGYLGGNGYPYNLDTNGYVYLDDYPYRAS
 FT                   GQLEGEIHVSTTVKPPSGFSTVYSPEHPRKAARLPLGIMDVHPPPVNRVLTPHHVAAWK
@@ -74,13 +76,13 @@ FT   gene            5999..7233
 FT                   /locus_tag="YALIA101_S20E00144G"
 FT   mRNA            join(5999..6317,6485..7233)
 FT                   /locus_tag="YALIA101_S20E00144G"
-FT                   /standard_name="YALIA101S20e00144g1"
 FT                   /product="YALIA101S20e00144g1_1"
+FT                   /standard_name="YALIA101S20e00144g1"
 FT   CDS             join(5999..6317,6485..7233)
-FT                   /transl_table=1
 FT                   /locus_tag="YALIA101_S20E00144G"
-FT                   /standard_name="YALIA101S20e00144g1_1"
 FT                   /protein_id="SEI37032.1"
+FT                   /standard_name="YALIA101S20e00144g1_1"
+FT                   /transl_table=1
 FT                   /translation="MGLRESQERSRNRESSRNREGNRLRDKQRGDLRERGERGERRERL
 FT                   KSRDKERGRNRDREKDFSNKDARKERFRSITGKDWGRNVTTVDEGAQHYAIIKSPMAYI
 FT                   PSSINFYAVSPDSTNRILFFKGVPAYVGVNDVVAQACGGPLEKVVVHPTMFGGTGEEAD

--- a/LT576317.embl
+++ b/LT576317.embl
--- a/LT576318.embl
+++ b/LT576318.embl
--- a/LT576319.embl
+++ b/LT576319.embl
-ID   LT576319; SV 1; linear; genomic DNA; CON; FUN; 5503 BP.
+ID   LT576319; SV 1; linear; genomic DNA; STD; FUN; 5503 BP.
 XX
 AC   LT576319;
 XX
-PR   Project:PRJEB14097;
-XX
 DT   19-JUN-2016 (Rel. 129, Created)
 DT   28-OCT-2016 (Rel. 130, Last updated, Version 2)
 XX
@@ -14,13 +12,13 @@ XX
 OS   Yarrowia lipolytica
 OC   Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes;
 OC   Saccharomycetales; Dipodascaceae; Yarrowia.
+OX   NCBI_TaxID=4952
 XX
 RN   [1]
 RA   Devillers H.;
 RT   ;
-RL   Submitted (20-MAY-2016) to the INSDC.
-RL   INRA UMR 1319, Institut Micalis, Bat. CBAI, Thiverval-Grignon, 78850,
-RL   France
+RL   Submitted (20-MAY-2016) to the INSDC. INRA UMR 1319, Institut Micalis,
+RL   Bat. CBAI, Thiverval-Grignon, 78850, France
 XX
 DR   MD5; 5bd90148b8a4de1d2cf87fdfa59e013b.
 DR   ENA; FLLM01000000; SET.
@@ -30,14 +28,20 @@ XX
 FH   Key             Location/Qualifiers
 FH
 FT   source          1..5503
-FT                   /organism="Yarrowia lipolytica"
-FT                   /mol_type="genomic DNA"
 FT                   /db_xref="taxon:4952"
+FT                   /mol_type="genomic DNA"
+FT                   /organism="Yarrowia lipolytica"
+FT   gene            114..4634
+FT                   /locus_tag="YALIA101_S28E00100G"
+FT   mRNA            114..4634
+FT                   /locus_tag="YALIA101_S28E00100G"
+FT                   /product="YALIA101S28e00100g1_1"
+FT                   /standard_name="YALIA101S28e00100g1"
 FT   CDS             114..4634
-FT                   /transl_table=1
 FT                   /locus_tag="YALIA101_S28E00100G"
-FT                   /standard_name="YALIA101S28e00100g1_1"
 FT                   /protein_id="SEI37044.1"
+FT                   /standard_name="YALIA101S28e00100g1_1"
+FT                   /transl_table=1
 FT                   /translation="MNSSDIMAAFQDEEPVDGLLKINEVQYEDLEGEDPGDTVPGTTIP
 FT                   AYQRPVFVQRPDYAPLPDSSAADDMHYLKGERFFTADTELDSVICVRCRTCVPTSNLEG
 FT                   HLRGVSHKVSLKKQSRIGAVVCTREELKDYCAKFSHCHNEKHIKSLPLAHPMLMEPVEG
@@ -64,20 +68,18 @@ FT                   DADDAEVPLVAQHDGRWLDCQHRQAAIEASFESRASMSTWYSKLYSKYAHKLQNLCIPC
 FT                   YFDGVKGCEYCDKAKRGAKAFFADYRQVMGSYKKKVAGSESFIYTGGPFAKYSCCFDCG
 FT                   QPMQECTTTPSSNGKRKCNNRKYQGILFVLQWWKRRKNVANNRVHERFTKVMEEFCYKP
 FT                   YKEFQEFDKKASDYYSYVVEPGNRYLKCTPWYFMAITLYALLEGE"
-FT   mRNA            114..4634
-FT                   /locus_tag="YALIA101_S28E00100G"
-FT                   /standard_name="YALIA101S28e00100g1"
-FT                   /product="YALIA101S28e00100g1_1"
-FT   CDS             complement(4662..5501)
-FT                   /pseudo
-FT                   /transl_table=1
+FT   gene            complement(4662..5501)
 FT                   /locus_tag="YALIA101_S28E00122G"
-FT                   /standard_name="YALIA101S28e00122g1_1"
-FT                   /db_xref="PSEUDO:SEI37045.1"
 FT   mRNA            complement(4662..5501)
 FT                   /locus_tag="YALIA101_S28E00122G"
-FT                   /standard_name="YALIA101S28e00122g1"
 FT                   /product="YALIA101S28e00122g1_1"
+FT                   /standard_name="YALIA101S28e00122g1"
+FT   CDS             complement(4662..5501)
+FT                   /db_xref="PSEUDO:SEI37045.1"
+FT                   /locus_tag="YALIA101_S28E00122G"
+FT                   /pseudo
+FT                   /standard_name="YALIA101S28e00122g1_1"
+FT                   /transl_table=1
 XX
 SQ   Sequence 5503 BP; 1324 A; 1362 C; 1508 G; 1309 T; 0 other;
     cgccattctc tacaccagcc cctgcaacca gctcccacct atcgcccgtg tctacacctg        60

--- a/LT576320.embl
+++ b/LT576320.embl
-ID   LT576320; SV 1; linear; genomic DNA; CON; FUN; 6986 BP.
+ID   LT576320; SV 1; linear; genomic DNA; STD; FUN; 6986 BP.
 XX
 AC   LT576320;
 XX
-PR   Project:PRJEB14097;
-XX
 DT   19-JUN-2016 (Rel. 129, Created)
 DT   28-OCT-2016 (Rel. 130, Last updated, Version 2)
 XX
@@ -14,13 +12,13 @@ XX
 OS   Yarrowia lipolytica
 OC   Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes;
 OC   Saccharomycetales; Dipodascaceae; Yarrowia.
+OX   NCBI_TaxID=4952
 XX
 RN   [1]
 RA   Devillers H.;
 RT   ;
-RL   Submitted (20-MAY-2016) to the INSDC.
-RL   INRA UMR 1319, Institut Micalis, Bat. CBAI, Thiverval-Grignon, 78850,
-RL   France
+RL   Submitted (20-MAY-2016) to the INSDC. INRA UMR 1319, Institut Micalis,
+RL   Bat. CBAI, Thiverval-Grignon, 78850, France
 XX
 DR   MD5; 259f3e1e7fe59ca11c42cea169d2820c.
 DR   ENA; FLLM01000000; SET.
@@ -30,18 +28,20 @@ XX
 FH   Key             Location/Qualifiers
 FH
 FT   source          1..6986
-FT                   /organism="Yarrowia lipolytica"
-FT                   /mol_type="genomic DNA"
 FT                   /db_xref="taxon:4952"
+FT                   /mol_type="genomic DNA"
+FT                   /organism="Yarrowia lipolytica"
+FT   gene            1209..2639
+FT                   /locus_tag="YALIA101_S27E00100G"
 FT   mRNA            1209..2639
 FT                   /locus_tag="YALIA101_S27E00100G"
-FT                   /standard_name="YALIA101S27e00100g1"
 FT                   /product="YALIA101S27e00100g1_1"
+FT                   /standard_name="YALIA101S27e00100g1"
 FT   CDS             1209..2639
-FT                   /transl_table=1
 FT                   /locus_tag="YALIA101_S27E00100G"
-FT                   /standard_name="YALIA101S27e00100g1_1"
 FT                   /protein_id="SEI37042.1"
+FT                   /standard_name="YALIA101S27e00100g1_1"
+FT                   /transl_table=1
 FT                   /translation="MTTINSKALNGSFEGVPIGETIQWKNVLYADVKHRFAPPILKTDF