| ... | @@ -6,6 +6,7 @@ Then variants were filtered again based on certain criteria. Were removed from f |
... | @@ -6,6 +6,7 @@ Then variants were filtered again based on certain criteria. Were removed from f |
|
|
- FS (FisherStrand) > 60.0
|
|
- FS (FisherStrand) > 60.0
|
|
|
- SOR (StrandOddsRatio) > 3.0
|
|
- SOR (StrandOddsRatio) > 3.0
|
|
|
- MQ (RMSMappingQuality) < 40.0
|
|
- MQ (RMSMappingQuality) < 40.0
|
|
|
|
-
|
|
|
For further information on criteria, take a look at this page : https://gatk.broadinstitute.org/hc/en-us/articles/360035890471-Hard-filtering-germline-short-variants
|
|
For further information on criteria, take a look at this page : https://gatk.broadinstitute.org/hc/en-us/articles/360035890471-Hard-filtering-germline-short-variants
|
|
|
|
|
|
|
|
The phylogenic tree was generated using SNPhylo.20181005, with a bootstrap confidence value of 100, and Pathenocissus as outgroup.
|
|
The phylogenic tree was generated using SNPhylo.20181005, with a bootstrap confidence value of 100, and Pathenocissus as outgroup.
|
| ... | | ... | |
