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GeT-nextflow-NGL-Bi
wf-Illumina-nf
Commits
ad4d538c
Commit
ad4d538c
authored
Feb 12, 2021
by
Celine Noirot
Browse files
Update .gitlab-ci.yml
parent
09a648ad
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#37603
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.gitlab-ci.yml
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ad4d538c
# recipe for building singularity image and deploy it on the registery for bwa version 0.7.17
image
:
name
:
quay.io/singularity/singularity:v3.4.0
entrypoint
:
[
"
"
]
# recipe for building singularity image and deploy it on the registery for template
image
:
nextflow/nextflow
stages
:
-
build
-
deploy
-
push
push
:
script
:
-
nextflow run ./main.nf
-
nextflow run ./main.nf --help
# Build Singularity container bwa_v0.7.17.sif
singularity-image
:
image
:
quay.io/singularity/singularity:v3.4.0
stage
:
build
script
:
-
singularity build template.sif Singularityfile
...
...
@@ -23,6 +28,7 @@ singularity-image:
# Push the image template.sif on the registry
deploy
:
image
:
quay.io/singularity/singularity:v3.4.0
stage
:
deploy
script
:
-
singularity push --docker-username "${CI_REGISTRY_USER}" --docker-password "${CI_REGISTRY_PASSWORD}" template.sif oras://"$CI_REGISTRY_IMAGE"/"$CI_PROJECT_NAME":"$CI_COMMIT_TAG"
...
...
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