Commit 14214f62 authored by Celine Noirot's avatar Celine Noirot
Browse files

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parent b306b72b
...@@ -7,13 +7,13 @@ environment.yml / ...@@ -7,13 +7,13 @@ environment.yml /
%post %post
apt-get update && apt-get install -y procps && apt-get clean -y apt-get update && apt-get install -y procps && apt-get clean -y
/opt/conda/bin/conda env create -n wf_environment -f /environment.yml /opt/conda/bin/conda env create -n GeT-template-1.0dev -f /environment.yml
/opt/conda/bin/conda clean -a /opt/conda/bin/conda clean -a
%environment %environment
export LC_ALL=C
export PATH=/opt/conda/bin:$PATH export PATH=/opt/conda/bin:$PATH
. /opt/conda/etc/profile.d/conda.sh export PATH=/opt/conda/envs/GeT-template-1.0dev/bin:$PATH
conda activate wf_environment
%runscript %runscript
"$@" "$@"
...@@ -9,5 +9,3 @@ dependencies: ...@@ -9,5 +9,3 @@ dependencies:
# TODO nf-core: Add required software dependencies here # TODO nf-core: Add required software dependencies here
- bioconda::fastqc=0.11.8 - bioconda::fastqc=0.11.8
- bioconda::multiqc=1.7 - bioconda::multiqc=1.7
- conda-forge::r-markdown=1.1
- conda-forge::r-base=3.6.1
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