add test

.gitlab-ci.yml

@@ -2,12 +2,19 @@ stages:
  - build
  - deploy
  - test
+         
+push:
+   stage: test
+   image: nextflow/nextflow
+   script:
+        - singularity pull template-nf.sif oras://registry.forgemia.inra.fr/get-nextflow-ngl-bi/template-nf/template-nf:latest
+        - nextflow run main.nf -profile test,singularity
+
 # Build Singularity container bwa_v0.7.17.sif
 singularity-image:
    # recipe for building singularity image and deploy it on the registery for bwa version 0.7.17
    image:
       name: quay.io/singularity/singularity:v3.4.0
-
    stage: build
    script:
        - singularity build template.sif Singularityfile
@@ -32,12 +39,3 @@ deploy:
          - .gitlab-ci.yml
          - Singularityfile
          - emvironement.yml
-test:
-   image: nextflow/nextflow
-   stage: test
-   push:
-      script:
-         - git clone git clone git@forgemia.inra.fr:get-nextflow-ngl-bi/template-nf.git
-         - cd template-nf
-         - ln -s template.sif template-nf.sif 
-         - nextflow run main.nf -profile test,singularity