1. 14 Feb, 2020 4 commits
  2. 13 Feb, 2020 1 commit
    • Romain Therville's avatar
      Update to tx_nG6_pi1.js · 96749b1b
      Romain Therville authored
      The ajax return codes (0,1,2 and 3) cannot be evaluated as strings.
      "if (val == '1') {" becomes "if (val == 1) {" .
      
      Warning : We could also leave this file as it is, and make sure the
      value returned in AJAX is a String.
      
      issue #170
      96749b1b
  3. 12 Feb, 2020 1 commit
    • Romain Therville's avatar
      Update to the single project view · cc11c1b8
      Romain Therville authored
      - The "New data added to this project will be kept [...]" label has been
      removed.
      - The label indicating a space's retention limit and purge policy will
      now be set in application.properties, as 'purge_msg' in the project
      variables.
      - Every project's purge message will be displayed in its individual view
      (Under the "Current space: xxx" label).
      
      issue #161
      cc11c1b8
  4. 11 Feb, 2020 2 commits
  5. 06 Feb, 2020 2 commits
  6. 05 Feb, 2020 3 commits
  7. 30 Jan, 2020 1 commit
  8. 27 Jan, 2020 2 commits
  9. 22 Jan, 2020 1 commit
  10. 15 Jan, 2020 5 commits
  11. 14 Jan, 2020 3 commits
    • Romain Therville's avatar
      Update for issue #151 · d6928bee
      Romain Therville authored
      Same branch as the old issue151, and same commit as
      c5f5c618 .
      I have deleted the branch and commits earlier this week, I thought the
      merge was already done.
      
      Also, this time I pushed the (much needed) updated ng6_database.sql
      file.
      
      (Once again, when this update goes live, an update to the DB structure
      will be needed. See the related issue.)
      
      Issue #151
      d6928bee
    • Romain Therville's avatar
      Update to an error message: · 05c8a261
      Romain Therville authored
      "The user you entered doesn't have the rights to perform[...]"
      
      issue #129
      05c8a261
    • Romain Therville's avatar
      Update to the new migration form in the single project view. · b987a46a
      Romain Therville authored
      Before launching a project space migration (from the new form in the
      single project view), we ask for a user+ pwd and run the following test:
      We use the given user+pwd to run a "touch+rm" in the current project's
      space's data directory. In production, only ng6, root and users in the
      apache group can perform this action.
      (So only people with access to those credentials will be able tu run the
      switch_space_id workflow from there)
      
      More infos in the issue.
      
      Issue #129
      b987a46a
  12. 13 Jan, 2020 2 commits
    • Romain Therville's avatar
      Update to the single project view page · 12e21ebb
      Romain Therville authored
      The 'switch_space_id' migration workflow is now displayed for the
      current project's administrator users.
      (table fe_rights, right_level = 2)
      
      Superadmin users can still launch the migration of any project.
      
      (issue #129)
      12e21ebb
    • Romain Therville's avatar
      Update to the single project view page · 80d1d407
      Romain Therville authored
      The "switch_space_id" migration workflow form, in the single project
      view, will only be displayed to the project's administrators
      (right_level '2' in the 'fe_rights' database table).
      
      It stays available to superadmin users on all projects.
      
      (issue #129)
      80d1d407
  13. 10 Jan, 2020 2 commits
  14. 08 Jan, 2020 2 commits
  15. 07 Jan, 2020 1 commit
  16. 12 Dec, 2019 1 commit
  17. 28 Nov, 2019 3 commits
    • Romain Therville's avatar
      Minor visual update for the retention display in the single run and · f2d1c194
      Romain Therville authored
      single analysis views.
      
      issue #119
      f2d1c194
    • Romain Therville's avatar
      Huge update for the new migration workflow: · db1b75b8
      Romain Therville authored
      - New name : switch_space_id.
      - The given space id is checked in application.properties.
      - Most of the treatments have been moved to a "components" folder,
      allowing us to create easily a new "migrate_several_projects" (or
      "bulk_project_migration") later.
      - The workflow can be launched from the single project view on the nG6
      website, when logged a superadmin user.
      - The project's space_id is visible to everyone on the single project
      view.
      - A warning indicating that the migration updates the retention has been
      added to the workflow's form in single project view.
      - More logs in ng6.log, and the new log file MoveProject.stdout. (path
      exemple : [...]/jflow/work/switchspaceid/wf000452/MoveProject_default/MoveProject.stdout)
      - CSS updates for the project views.
      - For new space_ids, the <space_id>/run and <space_id>/analyze
      directories will be created if missing.
      
      
      Issue#129
      db1b75b8
    • ckuchly's avatar
      #143 : modified files who is analysed by fastqc, contaminationSearch and · 9b9e0e65
      ckuchly authored
      FastqIlluminaFilter.
      9b9e0e65
  18. 21 Nov, 2019 1 commit
    • Romain Therville's avatar
      issue#119 · 171f25f0
      Romain Therville authored
      - Display fixed when the analysis or run's data state is 'extended'
      - New line in the analysis and run single element display, indicating
      the purge date when the element has been purged.
      171f25f0
  19. 13 Nov, 2019 1 commit
  20. 12 Nov, 2019 1 commit
  21. 28 Oct, 2019 1 commit